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E92

Euk-Vir

Murid_betaherpesvirus_8

E92__YP_007016489__Murid_betaherpesvirus_8__1261657

Identity

Accession:
YP_007016489 ↗
Protein ID:
E92
Kingdom:
euk

Quality

68.9 mean pLDDT

Taxonomy

Heunggongvirae› Peploviricota› Herviviricetes› Herpesvirales› Orthoherpesviridae› Muromegalovirus› Murid_betaherpesvirus_8

TaxID: 1261657

Cluster

View cluster (42 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 111-222
PDB
Domain cluster: representative
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF03048.20 best Herpes_UL92 92.6 3.80e-26 99.1% 56.0%
CATH (26)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1w98B02 1.10.472.10 Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › Cyclin-like 0.67 57.0 5.75e-01 99.1% 91.2%
3h4cA01 1.10.472.10 Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › Cyclin-like 0.66 52.0 5.59e-01 96.4% 99.0%
3n00A00 1.10.565.10 Mainly Alpha › Orthogonal Bundle › Retinoid X Receptor › Retinoid X Receptor 0.66 57.0 4.85e-01 95.5% 84.8%
1guxB00 1.10.472.10 Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › Cyclin-like 0.65 58.0 5.42e-01 99.1% 87.9%
2b9rA01 1.10.472.10 Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › Cyclin-like 0.64 52.0 4.86e-01 100.0% 70.0%
1zp2A01 1.10.472.10 Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › Cyclin-like 0.64 49.0 4.93e-01 100.0% 80.0%
3iieB03 1.10.1740.10 Mainly Alpha › Orthogonal Bundle › Rna Polymerase Sigma Factor; Chain: A › RNA polymerase sigma factor, region 2, helix turn helix motif 0.64 41.0 4.55e-01 72.3% 83.5%
4yosA02 1.10.472.10 Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › Cyclin-like 0.63 57.0 5.08e-01 100.0% 90.0%
2ivxB02 1.10.472.10 Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › Cyclin-like 0.63 53.0 5.34e-01 100.0% 89.6%
1v4eA00 1.10.600.10 Mainly Alpha › Orthogonal Bundle › Farnesyl Diphosphate Synthase › Farnesyl Diphosphate Synthase 0.63 55.0 4.14e-01 97.3% 67.1%
3a06B03 1.10.1740.10 Mainly Alpha › Orthogonal Bundle › Rna Polymerase Sigma Factor; Chain: A › RNA polymerase sigma factor, region 2, helix turn helix motif 0.62 40.0 4.46e-01 72.3% 84.1%
1zp2A02 1.10.472.10 Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › Cyclin-like 0.61 54.0 5.43e-01 98.2% 97.3%
4r8zA00 1.10.3210.10 Mainly Alpha › Orthogonal Bundle › Hypothetical protein af1432 › Hypothetical protein af1432 0.60 49.0 3.97e-01 89.3% 71.6%
2gfhA02 1.20.120.710 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Haloacid dehalogenase hydrolase-like domain 0.58 39.0 4.38e-01 72.3% 91.9%
2gmyD00 1.20.1290.10 Mainly Alpha › Up-down Bundle › AhpD-like › AhpD-like 0.57 37.0 3.44e-01 100.0% 50.3%
6n2nA01 3.40.920.10 Alpha Beta › 3-Layer(aba) Sandwich › Pyruvate-ferredoxin Oxidoreductase; domain 3 › Pyruvate-ferredoxin oxidoreductase, PFOR, domain III 0.57 47.0 4.16e-01 93.8% 96.1%
3kh1A00 1.10.3210.10 Mainly Alpha › Orthogonal Bundle › Hypothetical protein af1432 › Hypothetical protein af1432 0.56 44.0 3.76e-01 86.6% 67.2%
3feyA02 1.25.40.180 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › 0.55 37.0 3.13e-01 96.4% 40.6%
4bjaA00 1.10.490.10 Mainly Alpha › Orthogonal Bundle › Globin-like › Globins 0.55 46.0 3.98e-01 93.8% 81.3%
3djbA01 1.10.472.50 Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › HD-domain/PDEase-like 0.54 43.0 4.53e-01 92.9% 100.0%
1w33A00 1.10.3160.10 Mainly Alpha › Orthogonal Bundle › Bbcrasp-1 › Bbcrasp-1 0.52 35.0 3.09e-01 100.0% 42.5%
5cbgA00 1.10.287.70 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › 0.52 36.0 3.75e-01 87.5% 77.5%
1ehkA00 1.20.210.10 Mainly Alpha › Up-down Bundle › Cytochrome C Oxidase; Chain A › Cytochrome c oxidase-like, subunit I domain 0.51 43.0 2.83e-01 94.6% 53.3%
1u61A00 1.10.1520.10 Mainly Alpha › Orthogonal Bundle › Ribonuclease iii, N-terminal Endonuclease Domain; Chain A › Ribonuclease III domain 0.50 35.0 3.46e-01 73.2% 96.1%
4a2nB00 1.20.120.1630 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › 0.50 44.0 3.73e-01 99.1% 79.7%
5zjgA02 1.10.246.130 Mainly Alpha › Orthogonal Bundle › Serum Albumin; Chain A, Domain 1 › Gamma-glutamyltranspeptidase, large (L) subunit, C-terminal domain 0.50 43.0 4.36e-01 98.2% 94.6%
ECOD (30)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
5050239 101.1.10.0 ↗ alpha arrays › HTH › HTH › Cyclin-like 0.71 48.0 5.59e-01 84.8% 100.0%
3626373 101.1.10.0 ↗ alpha arrays › HTH › HTH › Cyclin-like 0.70 55.0 5.93e-01 92.9% 100.0%
4016535 101.1.10.0 ↗ alpha arrays › HTH › HTH › Cyclin-like 0.69 55.0 5.78e-01 95.5% 97.0%
3824951 101.1.10.0 ↗ alpha arrays › HTH › HTH › Cyclin-like 0.69 54.0 5.82e-01 97.3% 100.0%
3829747 101.1.10.1 ↗ alpha arrays › HTH › HTH › Cyclin-like › Cyclin_N 0.69 57.0 5.17e-01 100.0% 67.3%
5064400 101.1.10.0 ↗ alpha arrays › HTH › HTH › Cyclin-like 0.68 51.0 5.46e-01 92.0% 93.7%
3392725 101.1.10.1 ↗ alpha arrays › HTH › HTH › Cyclin-like › Cyclin_N 0.68 58.0 5.47e-01 100.0% 77.0%
3737512 101.1.10.1 ↗ alpha arrays › HTH › HTH › Cyclin-like › Cyclin_N 0.68 57.0 5.18e-01 99.1% 68.0%
4259036 101.1.10.7 ↗ alpha arrays › HTH › HTH › Cyclin-like › Cyclin_C 0.68 51.0 5.03e-01 92.9% 74.0%
3222426 101.1.10.1 ↗ alpha arrays › HTH › HTH › Cyclin-like › Cyclin_N 0.67 57.0 5.26e-01 100.0% 72.4%
3172193 101.1.10.1 ↗ alpha arrays › HTH › HTH › Cyclin-like › Cyclin_N 0.66 56.0 4.87e-01 100.0% 59.4%
3595452 101.1.10.0 ↗ alpha arrays › HTH › HTH › Cyclin-like 0.66 57.0 5.19e-01 100.0% 70.3%
3354328 101.1.10.4 ↗ alpha arrays › HTH › HTH › Cyclin-like › RB_B 0.66 59.0 5.09e-01 99.1% 76.0%
4976309 101.1.10.0 ↗ alpha arrays › HTH › HTH › Cyclin-like 0.65 54.0 5.61e-01 100.0% 99.0%
3610169 101.1.10.1 ↗ alpha arrays › HTH › HTH › Cyclin-like › Cyclin_N 0.64 58.0 4.60e-01 100.0% 48.7%
4144086 166.1.1.1 ↗ alpha superhelices › 1-deoxy-D-xylulose-5-phosphate reductoisomerase-C › 1-deoxy-D-xylulose-5-phosphate reductoisomerase-C › 1-deoxy-D-xylulose-5-phosphate reductoisomerase-C › DXPR_C 0.64 41.0 4.28e-01 71.4% 71.0%
3910418 101.1.10.4 ↗ alpha arrays › HTH › HTH › Cyclin-like › RB_B 0.63 56.0 4.85e-01 99.1% 71.4%
3339942 101.1.10.7 ↗ alpha arrays › HTH › HTH › Cyclin-like › Cyclin_C 0.63 55.0 5.16e-01 95.5% 90.4%
3998777 101.1.10.4 ↗ alpha arrays › HTH › HTH › Cyclin-like › RB_B 0.63 56.0 5.02e-01 98.2% 76.1%
3668466 101.1.10.21 ↗ alpha arrays › HTH › HTH › Cyclin-like › Cyclin_N,Cyclin_C 0.63 56.0 4.38e-01 100.0% 89.4%
5024025 131.1.1.3 ↗ alpha complex topology › PDEase-like › HD-domain/PDEase-like › HD-domain/PDEase-like › HD 0.62 54.0 4.81e-01 99.1% 89.7%
3598970 101.1.10.0 ↗ alpha arrays › HTH › HTH › Cyclin-like 0.61 53.0 5.29e-01 100.0% 93.0%
3788414 142.1.1.0 ↗ alpha complex topology › Sigma2 domain-like › Sigma2 domain of RNA polymerase sigma factors › Sigma2 domain of RNA polymerase sigma factors 0.60 42.0 4.61e-01 73.2% 88.9%
3471785 193.1.1.16 ↗ alpha bundles › CH domain-like › Calponin-homology domain-like › Calponin-homology domain-like › IFT57 0.60 34.0 3.32e-01 94.6% 49.2%
3221093 101.1.10.17 ↗ alpha arrays › HTH › HTH › Cyclin-like › CycT2-like_C 0.59 51.0 5.08e-01 95.5% 100.0%
3498736 5001.1.1.0 ↗ alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like 0.57 46.0 3.62e-01 90.2% 56.9%
3236728 106.1.1.0 ↗ alpha arrays › Globin-like › Globin-like › Globin-like 0.55 47.0 4.19e-01 95.5% 79.4%
3909352 5001.1.1.9 ↗ alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › TAS2R 0.53 43.0 3.20e-01 90.2% 61.9%
None — 0.52 46.0 2.94e-01 100.0% 33.6%
5036318 140.1.1.11 ↗ alpha bundles › Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases › Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases › Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases › DALR_1 0.51 46.0 3.74e-01 100.0% 97.2%
D2 medium residues 49-110
PDB