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EF153632.1__ABL96758.1__BcepF1.027__00027

Bact-Vir

EF153632.1__ABL96758.1__BcepF1.027__00027

Identity

Accession:
EF153632 ↗
Kingdom:
phage

Quality

72.2 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Lindbergviridae› Bcepfunavirus› Burkholderia_phage_BcepF1

TaxID: 2886897

Cluster

Singleton — not in a non-trivial cluster

3D Structure

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Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 1-81
PDB
Domain cluster: representative
CATH (36)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3qwmA00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.70 55.0 4.71e-01 88.9% 53.5%
2w9jA00 3.30.720.10 Alpha Beta › 2-Layer Sandwich › Signal recognition particle alu RNA binding heterodimer, srp9/1 › Signal recognition particle alu RNA binding heterodimer, srp9/1 0.69 44.0 4.63e-01 70.4% 73.2%
2oarB00 1.10.1200.120 Mainly Alpha › Orthogonal Bundle › Non-ribosomal Peptide Synthetase Peptidyl Carrier Protein; Chain A › Large-conductance mechanosensitive channel, MscL; domain 1 0.69 39.0 3.38e-01 81.5% 36.0%
2rgnB02 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.66 48.0 4.14e-01 84.0% 49.6%
7kx7A03 3.30.420.10 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › Ribonuclease H-like superfamily/Ribonuclease H 0.66 45.0 3.35e-01 71.6% 47.4%
3so6A00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.65 50.0 4.18e-01 81.5% 84.7%
5mu3B00 3.40.50.12050 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 0.65 54.0 4.39e-01 95.1% 51.5%
1ntvA00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.63 48.0 3.84e-01 80.2% 75.0%
1xr0B01 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.62 36.0 3.52e-01 71.6% 51.6%
2ctkA00 3.30.1370.10 Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S8; Chain: A, domain 1 › K Homology domain, type 1 0.60 44.0 4.04e-01 76.5% 83.7%
1fxkC00 1.10.287.370 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › 0.60 52.0 4.37e-01 93.8% 67.7%
2m38A00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.59 42.0 3.56e-01 74.1% 83.0%
3n8bA00 3.10.450.700 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.58 45.0 4.67e-01 85.2% 94.7%
4pmwA04 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.56 41.0 3.95e-01 76.5% 72.5%
4ikbA00 3.30.1520.10 Alpha Beta › 2-Layer Sandwich › PX Domain › Phox-like domain 0.56 39.0 3.44e-01 77.8% 46.5%
2x45A00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.56 39.0 3.26e-01 71.6% 56.2%
3hrgA02 3.30.420.260 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › Protein of unknown function DUF3822, C-terminal domain 0.55 35.0 3.16e-01 74.1% 44.7%
2crfA01 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.54 39.0 3.47e-01 77.8% 75.2%
2k50A01 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.54 38.0 3.57e-01 75.3% 83.7%
5dymA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.54 43.0 4.05e-01 85.2% 95.8%
2yz0A00 3.10.110.10 Alpha Beta › Roll › Ubiquitin Conjugating Enzyme › Ubiquitin Conjugating Enzyme 0.53 40.0 3.48e-01 84.0% 75.4%
4gl6A01 3.10.450.570 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › Domain of unknown function (DUF5037), N-terminal subdomain 0.53 36.0 3.62e-01 70.4% 86.6%
3hpcX00 3.30.1520.10 Alpha Beta › 2-Layer Sandwich › PX Domain › Phox-like domain 0.52 46.0 3.71e-01 96.3% 74.8%
4bgjA00 3.30.1520.10 Alpha Beta › 2-Layer Sandwich › PX Domain › Phox-like domain 0.52 36.0 3.24e-01 71.6% 87.3%
3ecfA00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.52 39.0 3.41e-01 80.2% 89.8%
1vhzA01 3.90.79.10 Alpha Beta › Alpha-Beta Complex › Nucleoside Triphosphate Pyrophosphohydrolase › Nucleoside Triphosphate Pyrophosphohydrolase 0.52 37.0 2.95e-01 76.5% 73.6%
6bu2A00 3.10.180.10 Alpha Beta › Roll › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase; domain 1 › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase, domain 1 0.52 35.0 2.93e-01 70.4% 57.3%
2qpvA00 3.30.530.20 Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain 0.52 37.0 3.18e-01 75.3% 62.9%
1k3eB02 3.30.1460.10 Alpha Beta › 2-Layer Sandwich › Yope Regulator; Chain: A, › 0.51 40.0 3.72e-01 85.2% 91.4%
2jr1A01 3.30.160.510 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Histone-like nucleoid-structuring protein H-NS 0.51 35.0 3.81e-01 72.8% 90.6%
3lp9A00 2.110.10.10 Mainly Beta › 4 Propeller › Hemopexin › Hemopexin-like domain 0.51 35.0 2.63e-01 74.1% 37.9%
1gd5A00 3.30.1520.10 Alpha Beta › 2-Layer Sandwich › PX Domain › Phox-like domain 0.51 35.0 3.08e-01 72.8% 81.5%
2e12A00 2.30.30.720 Mainly Beta › Roll › SH3 type barrels. › Protein of unknown function (DUF3247) 0.50 36.0 3.47e-01 75.3% 76.3%
1oo0A00 3.30.1560.10 Alpha Beta › 2-Layer Sandwich › Mago nashi protein › Mago nashi 0.50 37.0 3.10e-01 79.0% 95.8%
1ue6D00 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.50 36.0 3.39e-01 76.5% 86.5%
2v8qA01 3.30.310.80 Alpha Beta › 2-Layer Sandwich › TATA-Binding Protein › Kinase associated domain 1, KA1 0.50 35.0 3.41e-01 72.8% 79.8%
ECOD (48)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3709820 3860.1.1.0 ↗ alpha bundles › Myosin VI lever arm › Myosin VI lever arm › Myosin VI lever arm 0.85 47.0 4.20e-01 75.3% 42.9%
5039031 220.1.1.76 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › bPH_2 0.72 46.0 4.18e-01 70.4% 48.2%
3531333 220.1.1.35 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › IQ_SEC7_PH 0.70 57.0 4.42e-01 92.6% 42.4%
3255946 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.70 40.0 4.12e-01 72.8% 58.7%
5077400 192.2.1.0 ↗ alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin 0.69 57.0 5.21e-01 90.1% 69.2%
3992484 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.68 51.0 4.41e-01 77.8% 73.3%
3707284 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.68 46.0 3.96e-01 77.8% 46.7%
3526272 220.1.1.4 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › Ran_BP1 0.67 49.0 3.93e-01 91.4% 41.3%
3381618 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.67 51.0 4.44e-01 91.4% 53.6%
3904091 220.1.1.5 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PID 0.66 49.0 4.02e-01 77.8% 79.3%
4029631 7502.1.1.1 ↗ a/b three-layered sandwiches › Anticodon-binding domain of Class II aaRS › Anticodon-binding domain of Class II aaRS › Anticodon-binding domain of Class II aaRS › HGTP_anticodon 0.66 45.0 4.19e-01 71.6% 96.2%
3745926 220.1.1.23 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › ICAP-1_inte_bdg 0.66 52.0 4.21e-01 85.2% 74.8%
3183690 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.66 48.0 3.90e-01 82.7% 41.3%
3859768 220.1.1.1 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PH 0.64 54.0 4.17e-01 91.4% 44.6%
3282901 223.1.1.35 ↗ a+b three layers › Profilin-like › sensor domains › sensor domains › sCache_3_2 0.64 47.0 3.01e-01 76.5% 29.1%
3211347 220.1.1.1 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PH 0.63 43.0 3.81e-01 80.2% 48.3%
4930437 220.1.1.219 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › CheF-arch 0.62 43.0 3.99e-01 76.5% 56.2%
3547409 604.1.1.153 ↗ alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat › DUF4455 0.61 54.0 3.99e-01 95.1% 60.5%
3566463 220.1.1.66 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › SOS1_NGEF_PH 0.61 49.0 3.83e-01 87.7% 43.4%
1841134 5085.1.1.1 ↗ a+b duplicates or obligate multimers › Outer membrane efflux proteins (OEP) › Outer membrane efflux proteins (OEP) › Outer membrane efflux proteins (OEP) › OEP 0.60 53.0 3.24e-01 95.1% 60.6%
4451022 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.59 44.0 3.93e-01 85.2% 54.2%
5055184 295.1.1.0 ↗ a+b two layers › ssDNA-binding transcriptional regulator domain-like › ssDNA-binding transcriptional regulator domain › ssDNA-binding transcriptional regulator domain 0.59 44.0 4.41e-01 82.7% 89.4%
3237594 220.1.1.1 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PH 0.59 42.0 3.54e-01 76.5% 45.5%
3240914 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.59 39.0 3.71e-01 70.4% 57.9%
3580096 277.1.1.1 ↗ a+b two layers › PX domain › PX domain › PX domain › PX 0.58 40.0 3.52e-01 71.6% 86.4%
3781935 277.1.1.1 ↗ a+b two layers › PX domain › PX domain › PX domain › PX 0.58 40.0 3.56e-01 71.6% 89.6%
3172487 220.1.1.57 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PH_20 0.58 42.0 3.43e-01 76.5% 41.3%
3705941 330.1.1.0 ↗ a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like 0.58 43.0 4.38e-01 81.5% 97.5%
4938125 896.1.1.0 ↗ a+b two layers › SRP9/14-like › Signal recognition particle alu RNA binding heterodimer SRP9/14-related › Signal recognition particle alu RNA binding heterodimer SRP9/14-related 0.58 43.0 4.25e-01 81.5% 75.3%
3691567 277.1.1.1 ↗ a+b two layers › PX domain › PX domain › PX domain › PX 0.57 40.0 3.55e-01 74.1% 86.3%
3211328 7579.1.1.89 ↗ a/b three-layered sandwiches › alpha/beta-Hydrolases › alpha/beta-Hydrolases › alpha/beta-Hydrolases › COesterase, BD-FAE 0.57 41.0 2.54e-01 75.3% 41.6%
4007550 223.1.1.162 ↗ a+b three layers › Profilin-like › sensor domains › sensor domains › PF30420 0.57 49.0 3.74e-01 96.3% 87.7%
3740252 216.1.1.4 ↗ a+b two layers › UBC-like › UBC-like › UBC-like › RWD 0.57 39.0 3.61e-01 74.1% 74.8%
4444614 330.1.1.0 ↗ a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like 0.57 42.0 4.25e-01 80.2% 93.8%
3944684 223.1.1.0 ↗ a+b three layers › Profilin-like › sensor domains › sensor domains 0.56 49.0 3.70e-01 96.3% 87.2%
3291526 101.1.8.0 ↗ alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes 0.56 38.0 2.94e-01 87.7% 32.0%
3442609 387.1.1.0 ↗ few secondary structure elements › omega toxin-like › omega toxin-related › omega toxin-related 0.56 38.0 4.20e-01 71.6% 95.0%
3253762 304.8.1.0 ↗ a+b two layers › Alpha-beta plaits › ACT-like › ACT-like 0.56 31.0 3.19e-01 75.3% 55.0%
3619778 207.1.1.0 ↗ beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats 0.56 38.0 2.64e-01 70.4% 29.3%
3788468 223.1.1.75 ↗ a+b three layers › Profilin-like › sensor domains › sensor domains › HAMP 0.54 43.0 2.74e-01 85.2% 22.2%
3266702 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.54 33.0 3.21e-01 72.8% 52.7%
5022899 896.1.1.8 ↗ a+b two layers › SRP9/14-like › Signal recognition particle alu RNA binding heterodimer SRP9/14-related › Signal recognition particle alu RNA binding heterodimer SRP9/14-related › DUF1678 0.54 36.0 3.53e-01 70.4% 64.9%
3479101 241.6.1.0 ↗ a+b two layers › Type III secretory system chaperone-like › Arp2/3 complex subunits › Arp2/3 complex subunits 0.54 38.0 3.39e-01 75.3% 72.5%
3272801 331.3.1.3 ↗ a+b two layers › TBP-like › Bet v1-like › Bet v1-like › START 0.53 47.0 2.96e-01 95.1% 39.2%
396 2.2.1.8 ↗ beta barrels › OB-fold › Bacterial enterotoxins › Bacterial enterotoxins › Pertus-S5-tox 0.53 37.0 3.59e-01 76.5% 87.8%
3444419 330.1.1.0 ↗ a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like 0.52 39.0 3.76e-01 84.0% 94.0%
3629592 206.1.1.0 ↗ a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase 0.52 38.0 2.98e-01 79.0% 83.2%
3664617 2.1.1.223 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › PF28721 0.50 32.0 3.23e-01 70.4% 61.2%