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EF455602.1__AAC00551.1__X__00026

Bact-Vir

EF455602.1__AAC00551.1__X__00026

Identity

Accession:
EF455602 ↗
Kingdom:
phage

Quality

76.8 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Lactobacillus_phage_LL-H

TaxID: 12348

Cluster

Singleton — not in a non-trivial cluster

3D Structure

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Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 354-455
PDB
Domain cluster: representative
CATH (22)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
6fmeA03 2.20.220.10 Mainly Beta › Single Sheet › Glycosyl hydrolase fold › alpha-Amylases 0.63 37.0 4.68e-01 70.6% 96.8%
5z5dA02 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.60 51.0 4.15e-01 95.1% 79.4%
6r3wA00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.59 48.0 4.06e-01 94.1% 54.7%
4nkbA01 3.30.1120.120 Alpha Beta › 2-Layer Sandwich › Arylsulfatase, C-terminal domain › 0.58 44.0 4.30e-01 100.0% 71.1%
5jozB02 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.57 49.0 3.99e-01 96.1% 79.9%
1fw3A00 2.40.230.10 Mainly Beta › Beta Barrel › Outer membrane phospholipase (ompla); Chain C › Phospholipase A1 0.56 50.0 3.81e-01 100.0% 52.0%
3qv0A00 3.10.280.10 Alpha Beta › Roll › Mitochondrial Matrix Protein; Chain A › Mitochondrial glycoprotein 0.55 47.0 3.88e-01 100.0% 52.0%
3jv1A00 3.10.280.10 Alpha Beta › Roll › Mitochondrial Matrix Protein; Chain A › Mitochondrial glycoprotein 0.55 47.0 3.85e-01 100.0% 51.6%
3obaA05 2.70.98.10 Mainly Beta › Distorted Sandwich › Beta-galactosidase; Chain A, domain 5 › 0.55 48.0 3.43e-01 95.1% 96.9%
2wjsA02 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.54 44.0 3.65e-01 88.2% 64.5%
7d8gA01 2.40.380.10 Mainly Beta › Beta Barrel › FomD barrel-like fold › FomD-like 0.53 45.0 3.85e-01 94.1% 82.6%
5mc9A02 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.52 42.0 3.52e-01 87.3% 63.2%
1hn0A04 2.60.220.10 Mainly Beta › Sandwich › Chondroitinase Ac; Chain A, domain 3 › Polysaccharide lyase family 8-like, C-terminal 0.52 46.0 4.30e-01 94.1% 98.4%
2xqyA01 3.30.500.50 Alpha Beta › 2-Layer Sandwich › Murine Class I Major Histocompatibility Complex, H2-DB; Chain A, domain 1 › 0.52 37.0 3.12e-01 82.4% 43.3%
1ms5B02 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.51 41.0 3.11e-01 87.3% 52.8%
4eqvA02 2.60.120.560 Mainly Beta › Sandwich › Jelly Rolls › Exo-inulinase; domain 1 0.51 45.0 3.75e-01 96.1% 80.1%
2wcoA03 2.60.220.10 Mainly Beta › Sandwich › Chondroitinase Ac; Chain A, domain 3 › Polysaccharide lyase family 8-like, C-terminal 0.51 45.0 4.37e-01 95.1% 97.4%
2kdyA01 2.60.40.1980 Mainly Beta › Sandwich › Immunoglobulin-like › 0.51 45.0 4.01e-01 97.1% 86.9%
4r8oA00 2.40.128.720 Mainly Beta › Beta Barrel › Lipocalin › 0.51 41.0 4.22e-01 92.2% 89.8%
3rc2A02 3.30.360.10 Alpha Beta › 2-Layer Sandwich › Dihydrodipicolinate Reductase; domain 2 › Dihydrodipicolinate Reductase; domain 2 0.51 38.0 3.15e-01 100.0% 42.6%
3db2B02 3.30.360.10 Alpha Beta › 2-Layer Sandwich › Dihydrodipicolinate Reductase; domain 2 › Dihydrodipicolinate Reductase; domain 2 0.50 40.0 3.26e-01 100.0% 43.8%
2wjsA03 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.50 41.0 3.54e-01 88.2% 66.5%
ECOD (25)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3513335 10.1.1.83 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases › Menorin_C 0.63 54.0 4.25e-01 94.1% 85.1%
2870992 222.1.1.17 ↗ a+b two layers › Thioesterase/thiol ester dehydrase-isomerase-like › Thioesterase/thiol ester dehydrase-isomerase › Thioesterase/thiol ester dehydrase-isomerase › PKS_DH_N 0.60 46.0 4.42e-01 82.4% 97.5%
4608739 222.1.1.17 ↗ a+b two layers › Thioesterase/thiol ester dehydrase-isomerase-like › Thioesterase/thiol ester dehydrase-isomerase › Thioesterase/thiol ester dehydrase-isomerase › PKS_DH_N 0.59 51.0 4.69e-01 95.1% 100.0%
4570827 12.3.1.68 ↗ beta sandwiches › Glycosyl hydrolase domain-like › supersandwich › supersandwich › PF25841 0.58 51.0 3.84e-01 94.1% 97.9%
3466554 844.1.1.1 ↗ beta barrels › Transcriptional factor tubby, C-terminal domain › Transcriptional factor tubby, C-terminal domain › Transcriptional factor tubby, C-terminal domain › Tub 0.57 43.0 3.20e-01 80.4% 30.3%
3888860 7515.1.1.2 ↗ a/b three-layered sandwiches › Alkaline phosphatase-like › Alkaline phosphatase-like › Alkaline phosphatase-like › Sulfatase 0.56 51.0 3.21e-01 99.0% 85.7%
3405027 7515.1.1.2 ↗ a/b three-layered sandwiches › Alkaline phosphatase-like › Alkaline phosphatase-like › Alkaline phosphatase-like › Sulfatase 0.56 50.0 3.22e-01 99.0% 86.5%
3743439 897.1.1.1 ↗ a+b two layers › Acidic mitochondrial matrix protein p32-like › Acidic mitochondrial matrix protein p32 › Acidic mitochondrial matrix protein p32 › MAM33 0.55 49.0 3.98e-01 100.0% 52.4%
3796323 3523.1.1.0 ↗ beta meanders › Periplasmic lipopolysaccharide transport protein LptA (YhbN) › Periplasmic lipopolysaccharide transport protein LptA (YhbN) › Periplasmic lipopolysaccharide transport protein LptA (YhbN) 0.55 36.0 4.34e-01 85.3% 98.6%
3221259 10.1.1.17 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases › Laminin_G_2 0.55 46.0 3.51e-01 90.2% 56.2%
3217506 9.1.1.50 ↗ beta barrels › Lipocalins/Streptavidin › Lipocalins › Lipocalins › DUF7042 0.55 43.0 4.10e-01 84.3% 100.0%
3333781 12.3.1.13 ↗ beta sandwiches › Glycosyl hydrolase domain-like › supersandwich › supersandwich › Glyco_hydro_38C 0.55 50.0 3.58e-01 100.0% 97.6%
3685784 511.1.1.0 ↗ beta sandwiches › Heat shock protein 70kD (HSP70), peptide-binding domain › Heat shock protein 70kD (HSP70), peptide-binding domain › Heat shock protein 70kD (HSP70), peptide-binding domain 0.54 42.0 3.63e-01 85.3% 94.1%
3338842 4291.1.1.1 ↗ beta barrels › Oxysterol-binding protein › Oxysterol-binding protein › Oxysterol-binding protein › Oxysterol_BP 0.54 48.0 3.27e-01 100.0% 52.5%
4032202 4237.1.1.1 ↗ beta barrels › FomD-like › FomD-like › FomD-like › DUF402 0.53 46.0 3.93e-01 98.0% 81.1%
3634062 844.1.1.4 ↗ beta barrels › Transcriptional factor tubby, C-terminal domain › Transcriptional factor tubby, C-terminal domain › Transcriptional factor tubby, C-terminal domain › Scramblase 0.53 47.0 3.54e-01 98.0% 40.0%
3263743 9.2.1.0 ↗ beta barrels › Lipocalins/Streptavidin › Avidin/Streptavidin › Avidin/Streptavidin 0.53 42.0 3.96e-01 94.1% 69.6%
3618502 10.1.1.0 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases 0.53 42.0 3.67e-01 84.3% 71.3%
5033778 5084.1.1.0 ↗ beta barrels › Outer membrane meander beta-barrels › OMPA-like › OMPA-like 0.53 45.0 4.33e-01 100.0% 83.2%
3651664 4291.1.1.1 ↗ beta barrels › Oxysterol-binding protein › Oxysterol-binding protein › Oxysterol-binding protein › Oxysterol_BP 0.52 46.0 3.17e-01 100.0% 53.9%
4388667 298.1.1.24 ↗ a+b two layers › FwdE/GAPDH domain-like › Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain › Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain › GFO_IDH_MocA_C3 0.52 39.0 3.17e-01 77.5% 83.9%
3255116 4291.1.1.1 ↗ beta barrels › Oxysterol-binding protein › Oxysterol-binding protein › Oxysterol-binding protein › Oxysterol_BP 0.51 46.0 3.22e-01 100.0% 58.2%
3177497 844.1.1.4 ↗ beta barrels › Transcriptional factor tubby, C-terminal domain › Transcriptional factor tubby, C-terminal domain › Transcriptional factor tubby, C-terminal domain › Scramblase 0.51 46.0 3.52e-01 100.0% 47.1%
3179796 4291.1.1.1 ↗ beta barrels › Oxysterol-binding protein › Oxysterol-binding protein › Oxysterol-binding protein › Oxysterol_BP 0.50 44.0 3.00e-01 100.0% 51.4%
4023095 3385.1.1.0 ↗ beta barrels › Allergen Alt a 1 › Allergen Alt a 1 › Allergen Alt a 1 0.50 42.0 3.78e-01 96.1% 66.7%
D2 high residues 567-655
PDB
Domain cluster: rep: LC785692.1__BEU14643.1__X__00064__D439-516