←Back to structures

EF523948.1__ABP63585.1__BcepGomrgene14__00014

Bact-Vir

EF523948.1__ABP63585.1__BcepGomrgene14__00014

Identity

Accession:
EF523948 ↗
Kingdom:
phage

Quality

89.4 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Burkholderia_phage_BcepGomr

TaxID: 437329

Cluster

View cluster (5 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 31-105
PDB
Domain cluster: rep: ON529853.1__UTC29513.1__BAMBUS_04340__00430__D1-71
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF23812.2 best Phage_TAC_18 49.0 7.40e-13 86.7% 76.2%
CATH (32)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1lxlA00 1.10.437.10 Mainly Alpha › Orthogonal Bundle › Apoptosis Regulator Bcl-x › Blc2-like 0.67 54.0 3.85e-01 90.7% 29.9%
3s64A00 1.10.225.10 Mainly Alpha › Orthogonal Bundle › NK-Lysin › Saposin-like 0.64 52.0 5.13e-01 92.0% 85.2%
2l2oA00 1.10.10.1540 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Costar domain 0.63 48.0 4.66e-01 85.3% 95.3%
5d8cA00 1.10.1660.10 Mainly Alpha › Orthogonal Bundle › Multidrug-efflux Transporter Regulator; Chain: A; Domain 2 › 0.62 41.0 3.44e-01 100.0% 40.5%
2wcrB00 3.10.129.140 Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Helicobacter TNF-alpha-Inducing protein 0.62 48.0 3.91e-01 84.0% 63.0%
3pivA00 1.20.1250.10 Mainly Alpha › Up-down Bundle › Growth Hormone; Chain: A; › 0.62 50.0 3.97e-01 89.3% 83.3%
2d2sA01 1.20.58.1210 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Exo84p, N-terminal helical domain 0.61 42.0 3.69e-01 90.7% 46.6%
3gpvA00 1.10.1660.10 Mainly Alpha › Orthogonal Bundle › Multidrug-efflux Transporter Regulator; Chain: A; Domain 2 › 0.61 41.0 3.52e-01 100.0% 45.1%
4jqfA02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.61 45.0 4.63e-01 81.3% 100.0%
1mkmB01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.60 51.0 5.11e-01 96.0% 98.7%
2r4gA02 1.10.10.1970 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › TERT catalytic subunit-like 0.59 42.0 4.48e-01 89.3% 87.5%
2xheA04 1.25.40.60 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › 0.57 43.0 3.74e-01 92.0% 51.7%
1bjaA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.57 44.0 4.13e-01 89.3% 68.4%
3ecoB00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.57 44.0 3.79e-01 89.3% 51.2%
2qwwC00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.56 43.0 3.61e-01 88.0% 46.4%
7v6bA01 3.30.160.380 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Dicer dimerisation domain 0.56 36.0 3.15e-01 84.0% 43.9%
2x4hA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.56 42.0 3.50e-01 80.0% 66.7%
3exmA01 2.40.380.10 Mainly Beta › Beta Barrel › FomD barrel-like fold › FomD-like 0.55 47.0 3.49e-01 94.7% 49.7%
1v4aA03 1.20.120.330 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Nucleotidyltransferases domain 2 0.55 47.0 3.74e-01 96.0% 51.6%
4byfC01 1.20.120.720 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Myosin VI head, motor domain, U50 subdomain 0.54 40.0 3.81e-01 93.3% 66.3%
2jbrA01 1.10.540.10 Mainly Alpha › Orthogonal Bundle › Butyryl-Coa Dehydrogenase, subunit A; domain 1 › Acyl-CoA dehydrogenase/oxidase, N-terminal domain 0.54 45.0 3.92e-01 94.7% 59.7%
1aj3A00 1.20.58.60 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.54 41.0 3.80e-01 82.7% 89.8%
1wh4A01 1.10.533.10 Mainly Alpha › Orthogonal Bundle › Death Domain, Fas › Death Domain, Fas 0.54 36.0 3.43e-01 70.7% 57.4%
1u89A00 1.20.120.230 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Alpha-catenin/vinculin-like 0.53 46.0 3.82e-01 97.3% 75.5%
2lw1A00 1.10.287.380 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Valyl-tRNA synthetase, C-terminal domain 0.53 40.0 3.89e-01 82.7% 70.6%
1epuA03 1.25.40.60 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › 0.53 44.0 3.77e-01 92.0% 55.6%
5tw1D01 1.10.274.100 Mainly Alpha › Orthogonal Bundle › Enzyme I; Chain A, domain 2 › RNA polymerase Rpb1, domain 3 0.53 43.0 3.47e-01 88.0% 75.3%
3mw6B00 1.10.1710.10 Mainly Alpha › Orthogonal Bundle › Fertility Inhibition Protein O; Chain: A; Domain 1 › ProQ/FinO domain 0.53 41.0 3.93e-01 89.3% 97.9%
3cdhA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.53 46.0 3.81e-01 97.3% 70.1%
2qkdA04 2.60.120.1040 Mainly Beta › Sandwich › Jelly Rolls › ZPR1, A/B domain 0.52 40.0 3.42e-01 85.3% 68.5%
4xr7F02 1.10.287.3700 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › 0.52 37.0 3.57e-01 77.3% 90.0%
6zhhA01 3.40.1110.10 Alpha Beta › 3-Layer(aba) Sandwich › Calcium-transporting ATPase, cytoplasmic domain N › Calcium-transporting ATPase, cytoplasmic domain N 0.51 40.0 3.01e-01 84.0% 77.8%
ECOD (43)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4287075 101.11.1.1 ↗ alpha arrays › HTH › Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domain 3 › Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domain 3 › PNPase 0.69 57.0 5.42e-01 92.0% 83.3%
4140519 186.1.1.0 ↗ alpha arrays › lambda integrase-N-like › lambda integrase-N › lambda integrase-N 0.66 55.0 4.95e-01 90.7% 64.8%
4195219 101.1.2.309 ↗ alpha arrays › HTH › HTH › winged helix domain › GPAT_C 0.66 50.0 4.56e-01 81.3% 67.0%
4365970 101.1.2.309 ↗ alpha arrays › HTH › HTH › winged helix domain › GPAT_C 0.66 52.0 4.65e-01 88.0% 64.5%
3913925 570.1.1.1 ↗ alpha arrays › Pre-protein crosslinking domain of SecA › Pre-protein crosslinking domain of SecA › Pre-protein crosslinking domain of SecA › SecA_PP_bind 0.65 52.0 4.47e-01 90.7% 64.0%
3844936 101.1.1.273 ↗ alpha arrays › HTH › HTH › Three-helical HTH › PF26094 0.64 53.0 5.35e-01 93.3% 98.7%
3955695 101.1.2.297 ↗ alpha arrays › HTH › HTH › winged helix domain › Mrr_N 0.64 49.0 4.37e-01 84.0% 94.5%
143797 101.1.2.149 ↗ alpha arrays › HTH › HTH › winged helix domain › Costars 0.63 48.0 4.73e-01 85.3% 100.0%
4973462 101.1.2.297 ↗ alpha arrays › HTH › HTH › winged helix domain › Mrr_N 0.61 49.0 4.31e-01 89.3% 93.9%
None — 0.60 54.0 3.29e-01 97.3% 44.3%
4964883 101.1.2.945 ↗ alpha arrays › HTH › HTH › winged helix domain › PF26491 0.59 50.0 4.62e-01 97.3% 82.0%
3466679 7512.1.1.1 ↗ a/b three-layered sandwiches › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase › UDPGT 0.59 43.0 3.34e-01 77.3% 76.9%
3488291 604.1.1.0 ↗ alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat 0.58 45.0 4.02e-01 82.7% 90.5%
3968657 4033.1.1.1 ↗ alpha arrays › Acyl-CoA dehydrogenase N-terminal domain-like › Acyl-CoA dehydrogenase N-terminal domain-like › Acyl-CoA dehydrogenase N-terminal domain-like › Acyl-CoA_dh_N 0.58 47.0 4.57e-01 93.3% 78.8%
5019931 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.58 47.0 3.76e-01 89.3% 56.7%
398233 101.1.2.142 ↗ alpha arrays › HTH › HTH › winged helix domain › HTH_Crp_2 0.57 43.0 4.12e-01 82.7% 85.1%
3943611 601.27.1.2 ↗ alpha bundles › Four-helical up-and-down bundle › MW0975(SA0943)-like › MW0975(SA0943)-like › DUF3053 0.57 48.0 3.57e-01 96.0% 67.8%
3853979 101.1.2.573 ↗ alpha arrays › HTH › HTH › winged helix domain › NPHP3_hel 0.57 47.0 3.95e-01 93.3% 53.1%
3426912 101.1.1.121 ↗ alpha arrays › HTH › HTH › Three-helical HTH › Myb_DNA-bind_3 0.56 44.0 4.39e-01 89.3% 85.0%
3879122 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.56 44.0 3.79e-01 89.3% 64.6%
4933456 101.1.2.136 ↗ alpha arrays › HTH › HTH › winged helix domain › HTH_20 0.56 43.0 4.26e-01 89.3% 80.0%
4807989 4982.2.1.0 ↗ alpha arrays › KaiA/RbsU domain-like › Mitochondrial 54S ribosomal protein L8 C-terminal domain › Mitochondrial 54S ribosomal protein L8 C-terminal domain 0.56 41.0 4.36e-01 86.7% 89.4%
3386119 2006.1.1.0 ↗ a/b three-layered sandwiches › HAD domain-like › HAD domain-related › HAD-like 0.56 47.0 3.50e-01 98.7% 84.1%
5078761 101.1.2.92 ↗ alpha arrays › HTH › HTH › winged helix domain › HTH_11 0.56 42.0 3.72e-01 84.0% 53.9%
3421598 101.1.1.121 ↗ alpha arrays › HTH › HTH › Three-helical HTH › Myb_DNA-bind_3 0.56 46.0 4.02e-01 97.3% 60.8%
4016065 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.55 44.0 3.99e-01 90.7% 63.6%
5010704 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.55 44.0 3.69e-01 90.7% 58.6%
4927049 101.1.2.48 ↗ alpha arrays › HTH › HTH › winged helix domain › PadR 0.55 42.0 3.92e-01 85.3% 67.0%
3297454 109.4.1.1146 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › ARM_PUB 0.55 45.0 2.97e-01 92.0% 29.1%
4997277 2002.1.1.120 ↗ a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Radical_SAM 0.54 42.0 2.57e-01 84.0% 13.4%
4933006 4163.1.1.1 ↗ alpha bundles › GINS helical bundle-like › GINS helical bundle-like › PSF1 N-terminal domain-like › Sld5 0.54 44.0 3.91e-01 90.7% 63.6%
3774148 148.1.3.221 ↗ alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain › NPHP3_hel 0.54 44.0 2.91e-01 89.3% 67.3%
3736327 109.4.1.0 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.53 48.0 2.87e-01 100.0% 26.6%
3898899 5001.1.1.1 ↗ alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › 7tm_1 0.53 43.0 2.82e-01 88.0% 49.7%
3655694 4992.1.1.0 ↗ extended segments › RelB-like › RelB-like › RelB-like 0.52 41.0 3.97e-01 84.0% 75.3%
4011979 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.52 41.0 3.55e-01 90.7% 52.8%
4026711 109.4.1.21 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › ENTH 0.52 40.0 3.30e-01 84.0% 80.0%
3811169 2484.1.1.67 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › RVT_3 0.51 37.0 3.45e-01 81.3% 59.0%
3979390 192.2.1.5 ↗ alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › DUF4376 0.51 42.0 3.58e-01 92.0% 62.4%
3213440 174.1.1.0 ↗ few secondary structure elements › Tetraspanin transmembrane domain › Tetraspanin transmembrane domain › Tetraspanin transmembrane domain 0.51 45.0 3.52e-01 100.0% 77.6%
3964115 4970.1.1.2 ↗ alpha bundles › fingers domain in bacteriophage RB69-like DNA polymerase I › fingers domain in bacteriophage RB69-like DNA polymerase I › fingers domain in bacteriophage RB69-like DNA polymerase I › DNA_pol_A 0.51 45.0 3.76e-01 100.0% 68.5%
3367319 7512.1.1.1 ↗ a/b three-layered sandwiches › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase › UDPGT 0.50 40.0 2.90e-01 90.7% 78.3%
3479812 109.4.1.0 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.50 38.0 3.59e-01 85.3% 65.3%