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EF523948.1__ABP63611.1__BcepGomrgene40__00040

Bact-Vir

EF523948.1__ABP63611.1__BcepGomrgene40__00040

Identity

Accession:
EF523948 ↗
Kingdom:
phage

Quality

81.9 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 2-154
PDB
CATH (1)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3hpcX00 3.30.1520.10 Alpha Beta › 2-Layer Sandwich › PX Domain › Phox-like domain 0.51 37.0 3.70e-01 84.3% 74.2%
ECOD (1)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4290511 7572.1.1.1 a/b three-layered sandwiches › Phosphofructokinase C-terminal domain › Phosphofructokinase C-terminal domain › Phosphofructokinase C-terminal domain › PFK 0.55 40.0 4.08e-01 75.8% 99.4%
D2 high residues 176-229
PDB
CATH (44)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3e3vA03 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.87 76.0 7.58e-01 100.0% 92.9%
1vt0k00 1.10.3230.20 Mainly Alpha › Orthogonal Bundle › Hypothetical protein yqbg › P22 tail accessory factor (Gp4) 0.79 53.0 3.83e-01 70.4% 44.8%
3ff5A00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.78 58.0 5.82e-01 92.6% 79.6%
7vw6B01 1.10.10.1590 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › NADH-quinone oxidoreductase subunit E 0.76 58.0 5.46e-01 100.0% 68.7%
3juiA00 1.25.40.180 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › 0.72 61.0 4.34e-01 100.0% 31.6%
3fdqA01 1.20.120.1030 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Motility repressor MogR, DNA-binding domain 0.72 64.0 4.89e-01 100.0% 87.7%
1paqA00 1.25.40.180 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › 0.71 59.0 4.23e-01 100.0% 31.7%
3dtoA01 1.10.472.50 Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › HD-domain/PDEase-like 0.69 52.0 4.49e-01 98.1% 51.1%
2ew2A02 1.10.1040.10 Mainly Alpha › Orthogonal Bundle › N-(1-d-carboxylethyl)-l-norvaline Dehydrogenase; domain 2 › N-(1-d-carboxylethyl)-l-norvaline Dehydrogenase; domain 2 0.69 56.0 4.41e-01 100.0% 50.7%
1c9bA01 1.10.472.10 Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › Cyclin-like 0.66 51.0 4.34e-01 100.0% 49.5%
3mgdB00 3.40.630.30 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) 0.66 45.0 3.30e-01 72.2% 30.9%
3hwrA02 1.10.1040.10 Mainly Alpha › Orthogonal Bundle › N-(1-d-carboxylethyl)-l-norvaline Dehydrogenase; domain 2 › N-(1-d-carboxylethyl)-l-norvaline Dehydrogenase; domain 2 0.65 54.0 4.26e-01 100.0% 51.9%
3fajA00 1.20.120.950 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Uncharacterised protein DUF5062 0.65 47.0 3.86e-01 77.8% 41.6%
2kjgA00 1.20.120.970 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › 0.64 55.0 4.56e-01 98.1% 92.9%
3lkdB01 1.20.1260.30 Mainly Alpha › Up-down Bundle › Ferritin › N6 adenine-specific DNA methyltransferase, N-terminal domain 0.64 53.0 3.79e-01 100.0% 98.4%
2bnlC00 1.10.490.10 Mainly Alpha › Orthogonal Bundle › Globin-like › Globins 0.63 50.0 3.93e-01 96.3% 91.0%
2p0tA02 1.10.60.30 Mainly Alpha › Orthogonal Bundle › Diphtheria Toxin Repressor; domain 2 › PSPTO4464-like domains 0.63 45.0 4.14e-01 90.7% 58.3%
2f2cA02 1.10.472.10 Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › Cyclin-like 0.63 52.0 4.28e-01 98.1% 50.9%
2uyyA02 1.10.1040.10 Mainly Alpha › Orthogonal Bundle › N-(1-d-carboxylethyl)-l-norvaline Dehydrogenase; domain 2 › N-(1-d-carboxylethyl)-l-norvaline Dehydrogenase; domain 2 0.62 48.0 3.76e-01 100.0% 38.2%
1vpdA02 1.10.1040.10 Mainly Alpha › Orthogonal Bundle › N-(1-d-carboxylethyl)-l-norvaline Dehydrogenase; domain 2 › N-(1-d-carboxylethyl)-l-norvaline Dehydrogenase; domain 2 0.62 53.0 4.07e-01 100.0% 87.0%
3dkqA02 4.10.860.20 Few Secondary Structures › Irregular › DNA Excision Repair, Uvrb; Chain A › Rabenosyn, Rab binding domain 0.62 36.0 3.87e-01 90.7% 66.0%
3nqxA02 1.10.390.10 Mainly Alpha › Orthogonal Bundle › Neutral Protease; domain 2 › Neutral Protease Domain 2 0.61 50.0 3.78e-01 96.3% 37.0%
1tgoA05 1.10.132.60 Mainly Alpha › Orthogonal Bundle › Topoisomerase I; Chain A, domain 4 › B family DNA polymerase, thumb domain 0.61 48.0 3.65e-01 100.0% 78.4%
1q6aA00 1.10.1240.30 Mainly Alpha › Orthogonal Bundle › Methyltransferase, Methionine Synthase (B12-binding Domains); Chain A, domain 1 › KaiA/RbsU domain 0.61 53.0 4.27e-01 100.0% 51.4%
4z7xB00 3.40.30.10 Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Glutaredoxin 0.60 52.0 3.51e-01 98.1% 30.3%
1oxjA01 1.10.150.50 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Transcription Factor, Ets-1 0.60 43.0 4.22e-01 100.0% 68.9%
1sz9C00 1.25.40.90 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › 0.60 46.0 3.44e-01 100.0% 32.9%
4dllB02 1.10.1040.10 Mainly Alpha › Orthogonal Bundle › N-(1-d-carboxylethyl)-l-norvaline Dehydrogenase; domain 2 › N-(1-d-carboxylethyl)-l-norvaline Dehydrogenase; domain 2 0.59 47.0 3.72e-01 100.0% 39.2%
1moqA01 3.40.50.10490 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Glucose-6-phosphate isomerase like protein; domain 1 0.59 44.0 2.97e-01 81.5% 54.6%
3l0iA01 1.20.120.1520 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › 0.58 49.0 3.45e-01 100.0% 29.5%
1n00A03 1.10.220.10 Mainly Alpha › Orthogonal Bundle › Annexin V; domain 1 › Annexin 0.58 43.0 4.01e-01 100.0% 63.0%
1lj2A00 1.20.5.970 Mainly Alpha › Up-down Bundle › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › Nonstructural RNA-binding protein 0.57 38.0 3.08e-01 70.4% 37.7%
3w6zA02 1.10.1040.10 Mainly Alpha › Orthogonal Bundle › N-(1-d-carboxylethyl)-l-norvaline Dehydrogenase; domain 2 › N-(1-d-carboxylethyl)-l-norvaline Dehydrogenase; domain 2 0.57 46.0 3.75e-01 100.0% 88.4%
3fxdB00 1.20.58.90 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.57 38.0 3.78e-01 85.2% 65.5%
5dikA00 1.20.1290.10 Mainly Alpha › Up-down Bundle › AhpD-like › AhpD-like 0.57 48.0 3.88e-01 100.0% 47.3%
1h7cA00 1.20.58.90 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.57 39.0 3.22e-01 79.6% 38.8%
1cxzB00 1.10.287.160 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › HR1 repeat 0.54 40.0 3.38e-01 85.2% 48.8%
3vtfA02 3.40.50.720 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain 0.53 45.0 3.07e-01 100.0% 41.8%
1v4aA01 1.10.4050.10 Mainly Alpha › Orthogonal Bundle › Nucleotidyltransferase substrate binding subunit/domain fold › Glutamine synthase adenylyltransferase GlnE 0.52 43.0 3.52e-01 96.3% 47.7%
2om6A02 1.10.150.400 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › 0.52 42.0 3.91e-01 100.0% 82.3%
3hr0B01 1.10.287.1060 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › ESAT-6-like 0.52 37.0 3.29e-01 79.6% 51.9%
1n00A01 1.10.220.10 Mainly Alpha › Orthogonal Bundle › Annexin V; domain 1 › Annexin 0.52 40.0 3.59e-01 92.6% 57.1%
1f5qB02 1.10.472.10 Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › Cyclin-like 0.51 43.0 3.32e-01 100.0% 75.4%
2pvqA02 1.20.1050.10 Mainly Alpha › Up-down Bundle › Glutathione S-transferase Yfyf (Class Pi); Chain A, domain 2 › 0.50 43.0 3.42e-01 100.0% 48.1%
ECOD (54)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3989443 101.35.1.4 alpha arrays › HTH › DNA repair regulatory protein RecX › DNA repair regulatory protein RecX › RecX_HTH3 0.84 73.0 7.15e-01 94.4% 87.9%
4050022 101.35.1.4 alpha arrays › HTH › DNA repair regulatory protein RecX › DNA repair regulatory protein RecX › RecX_HTH3 0.82 73.0 7.27e-01 100.0% 96.4%
4378615 101.35.1.4 alpha arrays › HTH › DNA repair regulatory protein RecX › DNA repair regulatory protein RecX › RecX_HTH3 0.81 68.0 6.83e-01 94.4% 90.9%
4311002 4198.1.1.2 alpha arrays › TerB-like › TerB-like › TerB-like › ThylakoidFormat 0.81 72.0 4.78e-01 100.0% 27.3%
4169204 101.35.1.0 alpha arrays › HTH › DNA repair regulatory protein RecX › DNA repair regulatory protein RecX 0.80 69.0 6.91e-01 98.1% 94.5%
3611539 4198.1.1.0 alpha arrays › TerB-like › TerB-like › TerB-like 0.79 69.0 4.69e-01 100.0% 28.6%
4489939 101.35.1.4 alpha arrays › HTH › DNA repair regulatory protein RecX › DNA repair regulatory protein RecX › RecX_HTH3 0.78 69.0 6.70e-01 100.0% 91.7%
4093240 101.35.1.4 alpha arrays › HTH › DNA repair regulatory protein RecX › DNA repair regulatory protein RecX › RecX_HTH3 0.78 67.0 6.72e-01 96.3% 94.5%
4214506 101.35.1.0 alpha arrays › HTH › DNA repair regulatory protein RecX › DNA repair regulatory protein RecX 0.78 67.0 6.74e-01 96.3% 94.5%
4991298 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.78 70.0 6.12e-01 100.0% 78.8%
4525625 101.35.1.4 alpha arrays › HTH › DNA repair regulatory protein RecX › DNA repair regulatory protein RecX › RecX_HTH3 0.78 67.0 6.51e-01 96.3% 86.7%
3643885 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.77 66.0 6.14e-01 100.0% 87.1%
4361091 101.35.1.4 alpha arrays › HTH › DNA repair regulatory protein RecX › DNA repair regulatory protein RecX › RecX_HTH3 0.77 62.0 6.04e-01 98.1% 81.7%
3806413 4133.1.1.0 alpha arrays › Emsy N terminal (ENT) domain-like › Emsy N terminal (ENT) domain-like › Emsy N terminal (ENT) domain-like 0.76 63.0 4.58e-01 100.0% 32.9%
3345966 4133.1.1.0 alpha arrays › Emsy N terminal (ENT) domain-like › Emsy N terminal (ENT) domain-like › Emsy N terminal (ENT) domain-like 0.76 63.0 5.72e-01 100.0% 68.0%
3378555 4133.1.1.2 alpha arrays › Emsy N terminal (ENT) domain-like › Emsy N terminal (ENT) domain-like › Emsy N terminal (ENT) domain-like › Tic110 0.76 63.0 4.36e-01 100.0% 27.6%
5064786 101.1.2.181 alpha arrays › HTH › HTH › winged helix domain › MCM_C 0.76 64.0 6.08e-01 100.0% 80.0%
4567840 101.35.1.4 alpha arrays › HTH › DNA repair regulatory protein RecX › DNA repair regulatory protein RecX › RecX_HTH3 0.75 62.0 6.23e-01 100.0% 90.9%
4105244 101.35.1.4 alpha arrays › HTH › DNA repair regulatory protein RecX › DNA repair regulatory protein RecX › RecX_HTH3 0.74 64.0 6.28e-01 100.0% 91.7%
3970736 101.35.1.0 alpha arrays › HTH › DNA repair regulatory protein RecX › DNA repair regulatory protein RecX 0.74 59.0 6.13e-01 92.6% 94.0%
5064032 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.72 63.0 5.80e-01 100.0% 75.7%
4482310 101.35.1.4 alpha arrays › HTH › DNA repair regulatory protein RecX › DNA repair regulatory protein RecX › RecX_HTH3 0.71 59.0 5.89e-01 100.0% 92.7%
3417818 101.1.1.138 alpha arrays › HTH › HTH › Three-helical HTH › GeBP-like_DBD 0.71 61.0 5.16e-01 100.0% 93.7%
4114206 101.35.1.0 alpha arrays › HTH › DNA repair regulatory protein RecX › DNA repair regulatory protein RecX 0.71 52.0 5.44e-01 96.3% 97.8%
4992012 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.70 55.0 5.43e-01 92.6% 83.3%
3484245 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.68 59.0 5.05e-01 100.0% 86.7%
5075124 2006.1.1.18 a/b three-layered sandwiches › HAD domain-like › HAD domain-related › HAD-like › HAD_2 0.68 52.0 3.44e-01 88.9% 19.7%
3221809 101.35.1.0 alpha arrays › HTH › DNA repair regulatory protein RecX › DNA repair regulatory protein RecX 0.67 55.0 5.41e-01 96.3% 91.7%
3246119 4003.1.1.1 alpha arrays › Helical bundle domain in YebC-like proteins › Helical bundle domain in YebC-like proteins › Helical bundle domain in YebC-like proteins › TACO1_YebC_N 0.67 54.0 5.05e-01 100.0% 71.4%
4027827 172.1.1.1 alpha complex topology › Citrate synthase-like › Citrate synthase › Citrate synthase › Citrate_synt 0.67 57.0 3.38e-01 100.0% 23.4%
3365397 4982.1.1.3 alpha arrays › KaiA/RbsU domain-like › KaiA/RbsU domain › KaiA/RbsU domain › Tic110 0.66 56.0 4.51e-01 100.0% 48.2%
4967165 102.1.1.0 alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › SAM domain-like 0.64 53.0 4.99e-01 98.1% 87.1%
5060063 4133.1.1.0 alpha arrays › Emsy N terminal (ENT) domain-like › Emsy N terminal (ENT) domain-like › Emsy N terminal (ENT) domain-like 0.64 53.0 4.97e-01 100.0% 75.7%
4959578 186.1.1.0 alpha arrays › lambda integrase-N-like › lambda integrase-N › lambda integrase-N 0.63 53.0 4.40e-01 96.3% 52.6%
3830185 4133.1.1.1 alpha arrays › Emsy N terminal (ENT) domain-like › Emsy N terminal (ENT) domain-like › Emsy N terminal (ENT) domain-like › ENT 0.63 53.0 5.22e-01 100.0% 91.7%
5067468 4133.1.1.0 alpha arrays › Emsy N terminal (ENT) domain-like › Emsy N terminal (ENT) domain-like › Emsy N terminal (ENT) domain-like 0.62 49.0 4.75e-01 96.3% 78.5%
1320273 101.1.10.11 alpha arrays › HTH › HTH › Cyclin-like › Herp-Cyclin 0.62 51.0 4.18e-01 98.1% 49.5%
4944926 2004.1.1.30 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Helicase_C 0.61 42.0 2.92e-01 100.0% 19.5%
3605626 192.12.1.0 alpha bundles › Long alpha-hairpin › Transcriptional repressor TraM › Transcriptional repressor TraM 0.61 45.0 3.59e-01 77.8% 70.5%
5061410 4133.1.1.0 alpha arrays › Emsy N terminal (ENT) domain-like › Emsy N terminal (ENT) domain-like › Emsy N terminal (ENT) domain-like 0.60 50.0 4.67e-01 100.0% 74.3%
3825979 109.4.1.420 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR 0.58 44.0 3.05e-01 88.9% 23.0%
3016251 532.2.1.1 alpha arrays › Type III secretion system domain-like › Type III secretion system domains › Type III secretion system domains › HrpJ 0.58 47.0 4.24e-01 100.0% 65.8%
5045789 601.7.1.0 alpha bundles › Four-helical up-and-down bundle › HEPN › Nucleotidyltransferase substrate binding subunit/domain 0.56 43.0 3.73e-01 85.2% 67.4%
3870505 7529.1.1.17 a/b three-layered sandwiches › Macro domain-like › Macro domain-like › Macro domain-like › PF30680 0.56 48.0 2.93e-01 96.3% 70.5%
3636835 109.4.1.173 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › NatA_aux_su 0.55 43.0 3.14e-01 100.0% 27.2%
4424778 605.2.1.3 alpha duplicates or obligate multimers › ROP-like › Hypothetical protein D-63 › Hypothetical protein D-63 › Seryl_tRNA_N 0.54 40.0 3.12e-01 85.2% 38.2%
4429833 192.7.1.2 alpha bundles › Long alpha-hairpin › tRNA-binding arm › tRNA-binding arm › Seryl_tRNA_N 0.54 37.0 3.08e-01 88.9% 35.5%
4024126 1065.1.1.0 alpha bundles › SPX domain › SPX domain › SPX domain 0.54 44.0 3.02e-01 98.1% 56.5%
3403179 604.7.1.1 alpha bundles › Spectrin repeat-like › Tubulin chaperone cofactor A › Tubulin chaperone cofactor A › TBCA 0.52 42.0 3.44e-01 92.6% 89.5%
3073109 192.29.1.0 alpha bundles › Long alpha-hairpin › bMERB domain (bivalent Mical/EHBP Rab binding) › bMERB domain (bivalent Mical/EHBP Rab binding) 0.51 40.0 3.61e-01 85.2% 98.6%
3390311 604.7.1.0 alpha bundles › Spectrin repeat-like › Tubulin chaperone cofactor A › Tubulin chaperone cofactor A 0.51 41.0 3.26e-01 88.9% 90.0%
4039238 192.6.1.1 alpha bundles › Long alpha-hairpin › Epsilon subunit of F1F0-ATP synthase C-terminal domain › Epsilon subunit of F1F0-ATP synthase C-terminal domain › ATP-synt_DE 0.51 39.0 3.89e-01 88.9% 80.0%
4061849 192.7.1.2 alpha bundles › Long alpha-hairpin › tRNA-binding arm › tRNA-binding arm › Seryl_tRNA_N 0.50 38.0 3.06e-01 83.3% 90.9%
3708344 604.1.1.160 alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat › DYH2-5-8_CC 0.50 40.0 3.03e-01 87.0% 69.2%