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EF579802.1__ABR10474.1__X__00044

Bact-Vir

EF579802.1__ABR10474.1__X__00044

Identity

Accession:
EF579802 ↗
Kingdom:
phage

Quality

78.8 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Minunavirus› Microbacterium_phage_Min1

TaxID: 446529

Cluster

Singleton — not in a non-trivial cluster

3D Structure

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Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 5-91
PDB
Domain cluster: rep: BK061310.1__DAZ90147.1__PROPHIFVLQ01-1_60__00060__D8-107
CATH (16)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2iw3A02 1.20.1390.20 Mainly Alpha › Up-down Bundle › PWI domain › 0.62 41.0 4.15e-01 96.6% 65.6%
5zjgA02 1.10.246.130 Mainly Alpha › Orthogonal Bundle › Serum Albumin; Chain A, Domain 1 › Gamma-glutamyltranspeptidase, large (L) subunit, C-terminal domain 0.61 51.0 4.68e-01 92.0% 70.5%
4gycA00 1.20.1070.10 Mainly Alpha › Up-down Bundle › Rhopdopsin 7-helix transmembrane proteins › Rhodopsin 7-helix transmembrane proteins 0.59 46.0 3.50e-01 85.1% 62.7%
3akaA00 1.10.238.10 Mainly Alpha › Orthogonal Bundle › Recoverin; domain 1 › EF-hand 0.59 50.0 4.06e-01 92.0% 51.9%
1wgwA00 1.20.120.140 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › SRP54, nucleotide-binding domain 0.59 41.0 3.98e-01 85.1% 63.6%
3aqbB00 1.10.600.10 Mainly Alpha › Orthogonal Bundle › Farnesyl Diphosphate Synthase › Farnesyl Diphosphate Synthase 0.57 52.0 3.51e-01 100.0% 51.7%
3pt1A02 1.20.930.60 Mainly Alpha › Up-down Bundle › Transcription Elongation Factor S-II; Chain A › 0.57 47.0 4.28e-01 90.8% 87.5%
1lq7A00 1.20.1270.70 Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › Designed single chain three-helix bundle 0.57 40.0 4.40e-01 89.7% 94.0%
1qv9A02 6.10.140.120 Special › Helix non-globular › Helix Hairpins › 0.56 43.0 4.10e-01 82.8% 77.7%
4ceiA03 6.10.250.2380 Special › Helix non-globular › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › 0.55 39.0 3.62e-01 93.1% 58.0%
1vsgA01 3.90.150.10 Alpha Beta › Alpha-Beta Complex › Variant Surface Glycoprotein; Chain A domain 1 › Variant Surface Glycoprotein, subunit A domain 1 0.55 44.0 3.41e-01 89.7% 91.6%
2ex3B02 1.20.1270.230 Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › DNA terminal protein Gp3, priming domain 0.54 38.0 3.94e-01 100.0% 80.2%
4iggB06 1.20.120.230 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Alpha-catenin/vinculin-like 0.53 42.0 3.23e-01 86.2% 40.9%
2gbbB00 1.20.59.10 Mainly Alpha › Up-down Bundle › Chorismate Mutase Domain, subunit A › Chorismate mutase 0.53 44.0 3.68e-01 90.8% 51.6%
2jx0A00 1.20.120.330 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Nucleotidyltransferases domain 2 0.51 40.0 3.57e-01 87.4% 61.8%
2rldA00 1.20.1440.60 Mainly Alpha › Up-down Bundle › de novo design (two linked rop proteins) › 23S rRNA-intervening sequence 0.50 37.0 3.52e-01 90.8% 63.2%
ECOD (33)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3721642 3327.1.1.1 ↗ alpha bundles › HET-S N-terminal domain › HET-S N-terminal domain › HET-S N-terminal domain › HeLo 0.62 56.0 4.36e-01 100.0% 70.5%
3692742 3755.4.1.0 ↗ alpha bundles › YscO-like › Phosphatidylinositol 3-kinase regulatory subunit inter-SH2 domain › Phosphatidylinositol 3-kinase regulatory subunit inter-SH2 domain 0.60 51.0 4.44e-01 94.3% 100.0%
3436406 3755.4.1.17 ↗ alpha bundles › YscO-like › Phosphatidylinositol 3-kinase regulatory subunit inter-SH2 domain › Phosphatidylinositol 3-kinase regulatory subunit inter-SH2 domain › Rx_N 0.60 52.0 4.54e-01 100.0% 87.1%
3730001 601.1.2.0 ↗ alpha bundles › Four-helical up-and-down bundle › alpha-catenin-related › I/LWEQ domain (Pfam 01608) 0.59 53.0 4.51e-01 100.0% 80.0%
4013341 3755.4.1.3 ↗ alpha bundles › YscO-like › Phosphatidylinositol 3-kinase regulatory subunit inter-SH2 domain › Phosphatidylinositol 3-kinase regulatory subunit inter-SH2 domain › Helo_like_N 0.59 52.0 4.68e-01 100.0% 91.2%
3721200 611.9.1.5 ↗ alpha bundles › N-cbl like › Resistance protein (Rx) N-terminal domain › Resistance protein (Rx) N-terminal domain › SesA 0.59 52.0 4.61e-01 100.0% 93.8%
3465280 632.7.1.0 ↗ alpha bundles › immunoglobulin/albumin-binding domain-like › Heat shock protein 70kD (HSP70), C-terminal subdomain › Heat shock protein 70kD (HSP70), C-terminal subdomain 0.58 40.0 4.20e-01 85.1% 78.8%
55657 162.1.1.0 ↗ alpha bundles › PTS-regulatory domain, PRD › PTS-regulatory domain, PRD › PTS-regulatory domain, PRD 0.58 49.0 4.93e-01 94.3% 97.8%
3727157 611.7.1.0 ↗ alpha bundles › N-cbl like › Mixed lineage kinase domain-like (MLKL) N-terminal domain › Mixed lineage kinase domain-like (MLKL) N-terminal domain 0.57 50.0 4.48e-01 97.7% 94.4%
3450792 632.1.1.0 ↗ alpha bundles › immunoglobulin/albumin-binding domain-like › Families 57/38 glycoside transferase middle domain › Families 57/38 glycoside transferase middle domain 0.57 45.0 4.03e-01 86.2% 72.8%
3343582 611.9.1.4 ↗ alpha bundles › N-cbl like › Resistance protein (Rx) N-terminal domain › Resistance protein (Rx) N-terminal domain › Rx_N 0.57 49.0 4.30e-01 100.0% 80.0%
3672790 611.9.1.4 ↗ alpha bundles › N-cbl like › Resistance protein (Rx) N-terminal domain › Resistance protein (Rx) N-terminal domain › Rx_N 0.57 49.0 4.23e-01 100.0% 77.9%
4019091 3755.4.1.0 ↗ alpha bundles › YscO-like › Phosphatidylinositol 3-kinase regulatory subunit inter-SH2 domain › Phosphatidylinositol 3-kinase regulatory subunit inter-SH2 domain 0.56 49.0 4.26e-01 98.9% 87.1%
5038871 632.11.1.0 ↗ alpha bundles › immunoglobulin/albumin-binding domain-like › AF1782-like › AF1782-like 0.55 42.0 4.06e-01 86.2% 73.3%
3443462 632.1.1.0 ↗ alpha bundles › immunoglobulin/albumin-binding domain-like › Families 57/38 glycoside transferase middle domain › Families 57/38 glycoside transferase middle domain 0.55 43.0 3.98e-01 86.2% 86.1%
3441543 632.1.1.0 ↗ alpha bundles › immunoglobulin/albumin-binding domain-like › Families 57/38 glycoside transferase middle domain › Families 57/38 glycoside transferase middle domain 0.54 42.0 3.96e-01 85.1% 75.5%
3441901 632.1.1.13 ↗ alpha bundles › immunoglobulin/albumin-binding domain-like › Families 57/38 glycoside transferase middle domain › Families 57/38 glycoside transferase middle domain › Rx_N 0.54 41.0 4.29e-01 87.4% 88.7%
4486891 5059.1.1.5 ↗ alpha bundles › Drug/Metabolite transporter › Drug/Metabolite transporter › Drug/Metabolite transporter › UAA 0.54 44.0 3.06e-01 93.1% 48.5%
4272227 5059.1.1.1 ↗ alpha bundles › Drug/Metabolite transporter › Drug/Metabolite transporter › Drug/Metabolite transporter › EamA 0.53 45.0 3.11e-01 94.3% 48.0%
3458091 632.1.1.13 ↗ alpha bundles › immunoglobulin/albumin-binding domain-like › Families 57/38 glycoside transferase middle domain › Families 57/38 glycoside transferase middle domain › Rx_N 0.53 38.0 3.89e-01 85.1% 78.8%
3459041 632.1.1.0 ↗ alpha bundles › immunoglobulin/albumin-binding domain-like › Families 57/38 glycoside transferase middle domain › Families 57/38 glycoside transferase middle domain 0.53 37.0 3.80e-01 85.1% 80.0%
3830226 5001.1.1.0 ↗ alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like 0.53 39.0 3.21e-01 81.6% 58.7%
3625869 5059.1.1.5 ↗ alpha bundles › Drug/Metabolite transporter › Drug/Metabolite transporter › Drug/Metabolite transporter › UAA 0.53 44.0 3.02e-01 93.1% 48.6%
3436259 632.15.1.5 ↗ alpha bundles › immunoglobulin/albumin-binding domain-like › Staphylococcal complement inhibitor (SCIN) › Staphylococcal complement inhibitor (SCIN) › Rx_N 0.53 42.0 3.79e-01 86.2% 64.2%
3694382 611.7.1.10 ↗ alpha bundles › N-cbl like › Mixed lineage kinase domain-like (MLKL) N-terminal domain › Mixed lineage kinase domain-like (MLKL) N-terminal domain › Helo_like_N 0.52 44.0 3.91e-01 100.0% 97.1%
3614714 2004.1.1.0 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases 0.52 41.0 3.03e-01 87.4% 86.3%
3256828 622.1.1.0 ↗ alpha bundles › YvfG-like › HSC20 (HSCB), C-terminal oligomerisation domain › HSC20 (HSCB), C-terminal oligomerisation domain 0.52 38.0 3.55e-01 77.0% 76.4%
3785966 5059.1.1.34 ↗ alpha bundles › Drug/Metabolite transporter › Drug/Metabolite transporter › Drug/Metabolite transporter › EamA, Nuc_sug_transp 0.52 44.0 2.98e-01 95.4% 45.2%
3460324 3291.1.1.51 ↗ alpha bundles › Charged multivesicular body protein 3 (CHMP3)-related › Charged multivesicular body protein 3 (CHMP3)-related › Charged multivesicular body protein 3 (CHMP3)-related › PGG 0.52 40.0 3.48e-01 87.4% 52.9%
4423640 5059.1.1.5 ↗ alpha bundles › Drug/Metabolite transporter › Drug/Metabolite transporter › Drug/Metabolite transporter › UAA 0.51 44.0 2.95e-01 95.4% 44.2%
3202306 4006.1.1.8 ↗ alpha bundles › Release factor (Pfam 00472) N-terminal alpha helical domain › Release factor (Pfam 00472) N-terminal alpha helical domain › Release factor (Pfam 00472) N-terminal alpha helical domain › Sas10_Utp3 0.51 42.0 3.82e-01 90.8% 93.3%
3797690 3447.1.1.0 ↗ alpha bundles › Isoprenylcysteine carboxyl methyltransferase (ICMT) › Isoprenylcysteine carboxyl methyltransferase (ICMT) › Isoprenylcysteine carboxyl methyltransferase (ICMT) 0.51 42.0 3.02e-01 93.1% 48.4%
3226564 5054.1.1.58 ↗ alpha complex topology › Voltage-gated ion channels › Voltage-gated ion channels › Voltage-gated ion channels › YVC1_C 0.50 40.0 2.69e-01 87.4% 26.3%
D2 high residues 128-235
PDB
Domain cluster: rep: NC_073317.1__YP_010749072.1__QCF72_gp16__00016__D4-119
CATH (22)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2pp6A02 2.40.10.210 Mainly Beta › Beta Barrel › Thrombin, subunit H › Phage tail proteins (gpFII-like) 0.81 47.0 6.08e-01 98.1% 100.0%
6toaE01 2.40.10.270 Mainly Beta › Beta Barrel › Thrombin, subunit H › Bacteriophage SPP1 head-tail adaptor protein 0.81 69.0 7.29e-01 95.4% 100.0%
3kojB00 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.71 36.0 3.94e-01 80.6% 58.9%
2qtlA02 2.40.30.10 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors 0.70 44.0 4.45e-01 72.2% 63.6%
3bp6B02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.69 40.0 4.35e-01 70.4% 69.3%
3gs9A01 6.20.110.10 Special › Other non-globular › Thrombin, subunit H › 0.67 47.0 5.25e-01 98.1% 100.0%
1xe1A00 2.40.30.10 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors 0.65 44.0 4.80e-01 93.5% 82.4%
5gxuB01 2.40.30.10 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors 0.64 42.0 4.05e-01 98.1% 59.0%
2rjzA02 3.30.70.60 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Ribosomal protein S6/Translation elongation factor EF1B 0.63 47.0 4.92e-01 100.0% 86.9%
2p5zX01 2.30.110.50 Mainly Beta › Roll › Pnp Oxidase; Chain A › 0.62 44.0 3.84e-01 75.9% 48.8%
5optY00 3.30.70.3370 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.61 42.0 4.04e-01 71.3% 61.8%
4q97A00 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.60 39.0 3.93e-01 70.4% 64.8%
3aa0B02 3.90.1150.210 Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › F-actin capping protein, beta subunit 0.60 30.0 2.69e-01 100.0% 32.9%
3of6E00 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.59 40.0 4.06e-01 71.3% 71.2%
3nrfA00 2.60.40.4110 Mainly Beta › Sandwich › Immunoglobulin-like › Protein of unknown function DUF4354 0.59 41.0 4.24e-01 72.2% 81.4%
1pqzA02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.55 36.0 3.73e-01 70.4% 70.3%
1jz7A02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.55 37.0 3.70e-01 71.3% 66.1%
6toaF01 3.30.2000.30 Alpha Beta › 2-Layer Sandwich › STM4215-like › 0.54 48.0 4.52e-01 99.1% 96.2%
5ixgA00 2.40.128.110 Mainly Beta › Beta Barrel › Lipocalin › Lipid/polyisoprenoid-binding, YceI-like 0.53 37.0 3.20e-01 70.4% 81.5%
2gjvA00 3.30.2000.10 Alpha Beta › 2-Layer Sandwich › STM4215-like › Phage tail protein-like 0.52 47.0 4.36e-01 100.0% 86.8%
2gaiA03 2.70.20.10 Mainly Beta › Distorted Sandwich › Topoisomerase I; domain 3 › Topoisomerase I, domain 3 0.51 33.0 3.15e-01 98.1% 56.9%
2g30A01 2.60.40.1150 Mainly Beta › Sandwich › Immunoglobulin-like › 0.51 34.0 3.37e-01 100.0% 63.2%
ECOD (28)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
2642578 1.1.13.3 ↗ beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins › Phage_H_T_join 0.81 73.0 7.34e-01 100.0% 93.6%
3975275 1.1.13.15 ↗ beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins › Gifsy-2 0.77 51.0 5.45e-01 100.0% 76.8%
4047115 2.1.1.6 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › SSB 0.73 36.0 3.77e-01 94.4% 51.0%
4879695 1.1.13.29 ↗ beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins › E217_gp28 0.71 63.0 5.86e-01 100.0% 78.0%
4032883 1.1.13.3 ↗ beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins › Phage_H_T_join 0.71 61.0 6.26e-01 99.1% 95.2%
5003311 1.1.13.0 ↗ beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins 0.71 66.0 6.56e-01 99.1% 98.2%
3058418 1.1.13.2 ↗ beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins › Phage_attach 0.68 51.0 5.24e-01 99.1% 82.4%
4044404 2.1.1.6 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › SSB 0.67 35.0 3.56e-01 94.4% 52.4%
4030357 1.1.7.25 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › AARP2CN 0.66 41.0 4.41e-01 73.1% 74.4%
3844504 11.1.1.363 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › C2-set_3 0.63 39.0 4.04e-01 70.4% 63.8%
3617304 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.61 40.0 4.01e-01 100.0% 64.5%
4944949 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.61 40.0 3.69e-01 71.3% 50.3%
3652419 243.3.1.19 ↗ a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin › DUF3615 0.59 35.0 3.38e-01 100.0% 52.5%
3267247 11.1.1.843 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › DUF7034 0.59 43.0 3.95e-01 76.9% 70.7%
3254455 11.1.1.843 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › DUF7034 0.59 42.0 3.67e-01 75.0% 59.4%
3251394 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.58 38.0 3.89e-01 71.3% 67.6%
3625709 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.58 39.0 4.04e-01 100.0% 71.4%
3976188 1.1.13.1 ↗ beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins › Phage_tube 0.57 51.0 4.47e-01 100.0% 83.6%
3274850 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.56 35.0 3.71e-01 71.3% 70.5%
3583745 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.56 41.0 3.72e-01 76.9% 77.9%
4174055 5084.1.1.0 ↗ beta barrels › Outer membrane meander beta-barrels › OMPA-like › OMPA-like 0.55 38.0 3.21e-01 70.4% 91.3%
3215618 11.1.1.532 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › C6 0.55 38.0 3.77e-01 99.1% 69.1%
4275538 11.1.1.10 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › PapD_N 0.54 35.0 3.49e-01 70.4% 62.7%
4012832 310.3.1.0 ↗ a+b two layers › RRF/tRNA synthetase additional domain-like › General secretion pathway protein M (EpsM) periplasmic domain-related › General secretion pathway protein M (EpsM) periplasmic domain-related 0.53 39.0 4.18e-01 100.0% 93.3%
5054304 1.1.5.0 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 0.52 46.0 4.38e-01 100.0% 81.5%
3945348 243.1.1.6 ↗ a+b two layers › Cystatin-like › NTF2-like › NTF2-like › VirB8 0.51 32.0 3.30e-01 79.6% 67.0%
None — 0.51 39.0 3.80e-01 100.0% 73.3%
3486913 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.50 35.0 3.35e-01 71.3% 76.0%