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EF579802.1__ABR10475.1__X__00045

Bact-Vir

EF579802.1__ABR10475.1__X__00045

Identity

Accession:
EF579802 ↗
Kingdom:
phage

Quality

91.2 mean pLDDT

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 21-89
PDB
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF04883.18 best HK97-gp10_like 23.1 1.60e-04 88.4% 53.8%
CATH (41)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
4qt4A00 3.40.50.1470 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Peptidyl-tRNA hydrolase 0.69 36.0 2.57e-01 97.1% 18.5%
3rrkA03 3.30.70.2750 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.69 48.0 4.76e-01 100.0% 68.9%
4wxaA00 3.30.310.50 Alpha Beta › 2-Layer Sandwich › TATA-Binding Protein › Alpha-D-phosphohexomutase, C-terminal domain 0.68 52.0 4.96e-01 100.0% 70.2%
4mh4A02 3.30.300.20 Alpha Beta › 2-Layer Sandwich › GMP Synthetase; Chain A, domain 3 › K homology (KH) domain 0.68 60.0 5.43e-01 100.0% 78.7%
1xexB00 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.67 59.0 4.52e-01 100.0% 47.2%
2mq8A00 3.30.70.600 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Ribosomal protein S10 0.67 54.0 4.70e-01 100.0% 57.1%
4bbyA05 3.30.300.330 Alpha Beta › 2-Layer Sandwich › GMP Synthetase; Chain A, domain 3 › 0.66 57.0 5.01e-01 100.0% 67.6%
4hvmB01 3.30.559.10 Alpha Beta › 2-Layer Sandwich › Chloramphenicol Acetyltransferase › Chloramphenicol acetyltransferase-like domain 0.65 55.0 4.05e-01 95.7% 60.6%
5h7kA01 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.65 46.0 3.15e-01 75.4% 40.9%
4ctaA02 3.30.70.2860 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.64 47.0 4.62e-01 95.7% 73.3%
2v4jB03 3.30.70.20 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.63 44.0 4.57e-01 94.2% 80.0%
3bt7A02 2.40.50.1070 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.63 50.0 4.06e-01 100.0% 43.4%
7r7eA01 3.30.300.30 Alpha Beta › 2-Layer Sandwich › GMP Synthetase; Chain A, domain 3 › ANL, C-terminal domain 0.62 53.0 4.55e-01 100.0% 59.7%
2p92A00 3.30.70.1490 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Cysteine protease Prp 0.62 45.0 4.08e-01 100.0% 56.8%
2v1xA03 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.60 40.0 3.46e-01 98.6% 43.6%
3n89A02 3.30.310.210 Alpha Beta › 2-Layer Sandwich › TATA-Binding Protein › 0.59 42.0 3.45e-01 100.0% 38.0%
2cxcA02 3.30.300.20 Alpha Beta › 2-Layer Sandwich › GMP Synthetase; Chain A, domain 3 › K homology (KH) domain 0.59 43.0 4.36e-01 91.3% 81.2%
3p9aF00 1.10.132.80 Mainly Alpha › Orthogonal Bundle › Topoisomerase I; Chain A, domain 4 › 0.58 44.0 3.55e-01 81.2% 73.1%
4x0qA03 3.30.70.370 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.58 50.0 4.01e-01 100.0% 73.4%
1t6aA02 3.30.310.120 Alpha Beta › 2-Layer Sandwich › TATA-Binding Protein › Rbstp2229 like protein 0.57 38.0 3.71e-01 82.6% 61.5%
4c12A02 3.40.1190.10 Alpha Beta › 3-Layer(aba) Sandwich › UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase › Mur-like, catalytic domain 0.57 49.0 3.44e-01 98.6% 93.3%
2anrA02 3.30.1370.10 Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S8; Chain: A, domain 1 › K Homology domain, type 1 0.56 43.0 4.25e-01 94.2% 81.3%
2cveA02 3.30.70.240 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.55 39.0 4.03e-01 89.9% 80.3%
4ejoA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.55 37.0 3.14e-01 91.3% 42.0%
1e8oA00 3.30.720.10 Alpha Beta › 2-Layer Sandwich › Signal recognition particle alu RNA binding heterodimer, srp9/1 › Signal recognition particle alu RNA binding heterodimer, srp9/1 0.55 36.0 3.56e-01 92.8% 62.2%
1go4A00 3.30.900.10 Alpha Beta › 2-Layer Sandwich › Cell Cycle, Spindle Assembly Checkpoint Protein; Chain A › HORMA domain 0.54 43.0 3.28e-01 94.2% 67.3%
2xzmG00 1.10.455.10 Mainly Alpha › Orthogonal Bundle › Ribosomal Protein S7 › Ribosomal protein S7/S5 0.53 40.0 2.94e-01 100.0% 29.2%
2grvA02 3.90.76.10 Alpha Beta › Alpha-Beta Complex › Dipeptide-binding Protein; domain 1 › Dipeptide-binding Protein; Domain 1 0.53 41.0 3.65e-01 100.0% 54.9%
2azeB00 6.10.250.540 Special › Helix non-globular › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › 0.53 31.0 2.79e-01 89.9% 36.6%
3h4rA00 3.90.320.10 Alpha Beta › Alpha-Beta Complex › Lambda Exonuclease; Chain A › 0.52 37.0 2.71e-01 76.8% 53.9%
2pmbA01 3.30.1850.10 Alpha Beta › 2-Layer Sandwich › MCP/YpsA-like › MoCo carrier protein-like 0.52 44.0 3.91e-01 100.0% 79.4%
1vx7H01 3.90.930.12 Alpha Beta › Alpha-Beta Complex › Outer Surface Protein A; domain 3 › Ribosomal protein L6 0.52 42.0 4.03e-01 94.2% 81.2%
1xhsA00 3.10.490.10 Alpha Beta › Roll › Hypothetical upf0131 protein ytfp › Gamma-glutamyl cyclotransferase-like 0.52 38.0 3.29e-01 79.7% 88.5%
7sk7A01 1.20.1070.10 Mainly Alpha › Up-down Bundle › Rhopdopsin 7-helix transmembrane proteins › Rhodopsin 7-helix transmembrane proteins 0.52 41.0 2.97e-01 95.7% 70.4%
6l3tA01 1.20.1440.80 Mainly Alpha › Up-down Bundle › de novo design (two linked rop proteins) › Gap junction channel protein cysteine-rich domain 0.52 43.0 3.23e-01 98.6% 78.9%
1v30A00 3.10.490.10 Alpha Beta › Roll › Hypothetical upf0131 protein ytfp › Gamma-glutamyl cyclotransferase-like 0.51 38.0 3.25e-01 79.7% 83.1%
1ti2B01 3.30.70.20 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.51 42.0 3.48e-01 94.2% 62.4%
1l1lA01 3.20.70.20 Alpha Beta › Alpha-Beta Barrel › Anaerobic Ribonucleotide-triphosphate Reductase Large Chain › 0.51 41.0 2.47e-01 89.9% 73.4%
1a97B00 3.40.50.2020 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 0.51 43.0 3.40e-01 95.7% 83.1%
2zy2A01 3.90.1150.10 Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › Aspartate Aminotransferase, domain 1 0.51 44.0 3.43e-01 98.6% 64.1%
4oo1I01 2.40.50.880 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.50 37.0 3.64e-01 85.5% 72.0%
ECOD (59)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
1206813 3067.1.1.1 few secondary structure elements › N-terminal domain of helicase-loading protein DnaI › N-terminal domain of helicase-loading protein DnaI › N-terminal domain of helicase-loading protein DnaI › DnaI_N 0.72 44.0 4.65e-01 73.9% 69.4%
3278999 327.11.1.0 a+b two layers › Alpha-lytic protease prodomain-like › KH-domains › Prokaryotic type KH domain (KH-domain type II) 0.70 63.0 5.79e-01 100.0% 76.7%
4791706 304.126.1.4 a+b two layers › Alpha-beta plaits › ferredoxin-like domain in vacuolar ATP synthase subunit C › ferredoxin-like domain in vacuolar ATP synthase subunit C › V_ATPase_I_N 0.70 49.0 4.81e-01 100.0% 68.9%
4498936 309.1.1.0 a+b two layers › LuxS, MPP, ThrRS/AlaRS common domain › LuxS, MPP, ThrRS/AlaRS common domain › LuxS/MPP-like metallohydrolase 0.70 60.0 4.39e-01 100.0% 38.0%
5044181 304.117.1.0 a+b two layers › Alpha-beta plaits › Ferredoxin-like domain in YebC › Ferredoxin-like domain in YebC 0.69 51.0 4.99e-01 98.6% 73.3%
4385049 304.39.1.1 a+b two layers › Alpha-beta plaits › Mechanosensitive channel protein MscS (YggB), C-terminal domain › Mechanosensitive channel protein MscS (YggB), C-terminal domain › MS_channel_3rd 0.68 59.0 5.16e-01 100.0% 64.8%
2834102 3501.1.1.1 a+b two layers › protein PCC1 › protein PCC1 › protein PCC1 › Pcc1 0.68 56.0 5.25e-01 100.0% 74.4%
1513105 3501.1.1.1 a+b two layers › protein PCC1 › protein PCC1 › protein PCC1 › Pcc1 0.67 52.0 4.95e-01 100.0% 72.0%
4996618 131.1.1.0 alpha complex topology › PDEase-like › HD-domain/PDEase-like › HD-domain/PDEase-like 0.66 53.0 3.26e-01 89.9% 49.2%
3217273 5001.1.1.1 alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › 7tm_1 0.66 53.0 3.38e-01 88.4% 64.1%
4599652 304.162.1.1 a+b two layers › Alpha-beta plaits › Competence or damage-inducible protein CinA middle domain › Competence or damage-inducible protein CinA middle domain › CinA_KH 0.65 48.0 4.70e-01 100.0% 71.2%
4502232 304.162.1.1 a+b two layers › Alpha-beta plaits › Competence or damage-inducible protein CinA middle domain › Competence or damage-inducible protein CinA middle domain › CinA_KH 0.65 54.0 5.19e-01 94.2% 82.5%
4679312 304.162.1.1 a+b two layers › Alpha-beta plaits › Competence or damage-inducible protein CinA middle domain › Competence or damage-inducible protein CinA middle domain › CinA_KH 0.64 48.0 4.69e-01 100.0% 72.5%
5017849 304.39.1.0 a+b two layers › Alpha-beta plaits › Mechanosensitive channel protein MscS (YggB), C-terminal domain › Mechanosensitive channel protein MscS (YggB), C-terminal domain 0.64 53.0 4.82e-01 100.0% 67.0%
5013852 3501.1.1.1 a+b two layers › protein PCC1 › protein PCC1 › protein PCC1 › Pcc1 0.64 52.0 4.94e-01 100.0% 75.3%
3734336 601.14.1.2 alpha bundles › Four-helical up-and-down bundle › Hemerythrin › Hemerythrin › DUF3433 0.64 45.0 3.20e-01 73.9% 58.6%
5030033 327.11.1.0 a+b two layers › Alpha-lytic protease prodomain-like › KH-domains › Prokaryotic type KH domain (KH-domain type II) 0.63 45.0 4.66e-01 91.3% 83.1%
4092189 327.11.1.1 a+b two layers › Alpha-lytic protease prodomain-like › KH-domains › Prokaryotic type KH domain (KH-domain type II) › KH_2 0.63 52.0 4.56e-01 100.0% 59.1%
3660452 309.1.1.1 a+b two layers › LuxS, MPP, ThrRS/AlaRS common domain › LuxS, MPP, ThrRS/AlaRS common domain › LuxS/MPP-like metallohydrolase › Peptidase_M16 0.62 54.0 3.98e-01 100.0% 35.4%
3907411 5001.1.1.111 alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › 7tm_1, 7TM_GPCR_Srw 0.62 50.0 3.23e-01 88.4% 64.2%
3987356 3067.1.1.1 few secondary structure elements › N-terminal domain of helicase-loading protein DnaI › N-terminal domain of helicase-loading protein DnaI › N-terminal domain of helicase-loading protein DnaI › DnaI_N 0.62 44.0 4.16e-01 75.4% 62.4%
4564327 878.1.1.1 a+b two layers › Hypothetical protein MTH677 › Hypothetical protein MTH677 › Hypothetical protein MTH677 › DUF3194 0.62 54.0 5.10e-01 100.0% 88.0%
None 0.61 50.0 3.22e-01 89.9% 65.4%
4954522 878.1.1.1 a+b two layers › Hypothetical protein MTH677 › Hypothetical protein MTH677 › Hypothetical protein MTH677 › DUF3194 0.61 52.0 4.77e-01 100.0% 77.7%
4087209 304.162.1.1 a+b two layers › Alpha-beta plaits › Competence or damage-inducible protein CinA middle domain › Competence or damage-inducible protein CinA middle domain › CinA_KH 0.61 45.0 4.38e-01 100.0% 71.2%
4991990 878.1.1.0 a+b two layers › Hypothetical protein MTH677 › Hypothetical protein MTH677 › Hypothetical protein MTH677 0.61 53.0 4.74e-01 100.0% 92.0%
4463014 304.162.1.1 a+b two layers › Alpha-beta plaits › Competence or damage-inducible protein CinA middle domain › Competence or damage-inducible protein CinA middle domain › CinA_KH 0.61 49.0 4.86e-01 95.7% 85.3%
3723914 327.11.2.40 a+b two layers › Alpha-lytic protease prodomain-like › KH-domains › Eukaryotic type KH-domain (KH-domain type I) › PF31052 0.61 40.0 4.12e-01 94.2% 72.3%
4032689 2.1.1.336 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › DNA_pol3_a_NII 0.60 50.0 4.90e-01 95.7% 86.7%
5035779 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.59 49.0 4.24e-01 98.6% 90.8%
3204533 304.24.1.0 a+b two layers › Alpha-beta plaits › EF-G C-terminal domain-like › EF-G C-terminal domain-like 0.59 41.0 4.01e-01 95.7% 66.7%
3675128 304.9.1.20 a+b two layers › Alpha-beta plaits › RNA-binding domain, RBD › RNA-binding domain, RBD › RRM_8 0.59 44.0 4.47e-01 97.1% 82.9%
4972768 316.1.1.0 a+b three layers › Nucleotidyltransferase-like › Nucleotidyltransferase › Nucleotidyltransferase 0.59 51.0 3.43e-01 100.0% 28.4%
3491073 5001.1.1.1 alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › 7tm_1 0.59 47.0 3.06e-01 88.4% 68.5%
3493241 323.1.1.0 a+b complex topology › CoA-dependent acyltransferases › CoA-dependent acyltransferases › CoA-dependent acyltransferases 0.59 51.0 3.86e-01 100.0% 86.9%
3415024 5001.1.1.1 alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › 7tm_1 0.59 46.0 3.06e-01 88.4% 59.7%
5074130 1075.1.1.0 alpha bundles › Type II ABC exporter transmembrane domain fold › Type II ABC exporter transmembrane domain-related › ABCG5/ABCG8 transmembrane domain 0.59 43.0 2.94e-01 78.3% 42.4%
3958080 304.4.1.0 a+b two layers › Alpha-beta plaits › Dimeric alpha+beta barrel › Dimeric alpha+beta barrel 0.58 41.0 4.09e-01 95.7% 70.7%
2623930 4001.1.1.4 a+b duplicates or obligate multimers › a+b domain in cullin-like proteins › a+b domain in cullin-like proteins › a+b domain in cullin-like proteins › Cullin_AB 0.58 48.0 4.15e-01 95.7% 57.7%
5008981 314.1.1.3 a+b three layers › Class II aaRS and biotin synthetases › Class II aaRS and biotin synthetases › Class II aaRS and biotin synthetases › tRNA-synt_2d 0.57 49.0 3.12e-01 100.0% 43.9%
5073431 1075.1.1.0 alpha bundles › Type II ABC exporter transmembrane domain fold › Type II ABC exporter transmembrane domain-related › ABCG5/ABCG8 transmembrane domain 0.57 46.0 2.74e-01 87.0% 39.4%
5039979 604.2.1.1 alpha bundles › Spectrin repeat-like › Succinate dehydrogenase/fumarate reductase flavoprotein C-terminal domain › Succinate dehydrogenase/fumarate reductase flavoprotein C-terminal domain › Succ_DH_flav_C 0.56 39.0 3.18e-01 72.5% 40.0%
5060556 3016.1.1.5 a+b two layers › C-terminal domain in some PLP-dependent transferases › C-terminal domain in some PLP-dependent transferases › C-terminal domain in some PLP-dependent transferases › SHMT 0.56 47.0 3.60e-01 95.7% 38.8%
5060820 2484.1.1.18 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › DDE_Tnp_1 0.56 48.0 2.96e-01 100.0% 23.0%
3652035 601.16.1.8 alpha bundles › Four-helical up-and-down bundle › FAT domain of focal adhesion kinase › FAT domain of focal adhesion kinase › DUF1218 0.55 45.0 3.38e-01 89.9% 61.1%
5031475 2498.1.1.0 mixed a+b and a/b › Zincin-like › "Metalloproteases (""zincins"") catalytic domain" › "Metalloproteases (""zincins"") catalytic domain" 0.55 48.0 3.21e-01 100.0% 47.5%
3281159 4107.1.1.1 alpha arrays › Jann2411-like › Jann2411-like › Jann2411-like › ABATE,zf-CGNR 0.53 35.0 2.82e-01 76.8% 29.1%
4384627 161.1.1.1 alpha complex topology › Helical scaffold and wing domains of SecA › Helical scaffold and wing domains of SecA › Helical scaffold and wing domains of SecA › SecA_SW 0.53 45.0 3.13e-01 94.2% 57.9%
3802552 601.1.1.91 alpha bundles › Four-helical up-and-down bundle › alpha-catenin-related › alpha-catenin/vinculin › DUF1218 0.53 40.0 3.03e-01 81.2% 67.9%
3208120 633.23.1.22 alpha bundles › Bromodomain-like › Claudin › Claudin › MARVEL 0.53 46.0 3.54e-01 97.1% 92.3%
3310916 5069.1.1.55 alpha bundles › Transmembrane heme-binding four-helical bundle › Transmembrane heme-binding four-helical bundle › Transmembrane di-heme cytochromes › DUF1218 0.53 42.0 3.20e-01 88.4% 75.9%
5043001 101.1.2.135 alpha arrays › HTH › HTH › winged helix domain › MarR_2 0.52 34.0 2.99e-01 76.8% 42.9%
3553091 109.4.1.0 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.52 41.0 3.05e-01 88.4% 59.5%
4505972 323.1.1.3 a+b complex topology › CoA-dependent acyltransferases › CoA-dependent acyltransferases › CoA-dependent acyltransferases › AMP-binding 0.52 46.0 2.99e-01 100.0% 31.2%
3961061 304.4.1.4 a+b two layers › Alpha-beta plaits › Dimeric alpha+beta barrel › Dimeric alpha+beta barrel › ABM 0.52 43.0 4.09e-01 100.0% 80.0%
3969345 5050.1.1.0 alpha complex topology › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter 0.51 43.0 3.17e-01 100.0% 82.7%
5075945 304.4.1.0 a+b two layers › Alpha-beta plaits › Dimeric alpha+beta barrel › Dimeric alpha+beta barrel 0.51 41.0 4.09e-01 95.7% 91.4%
4973579 5050.1.1.9 alpha complex topology › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › MFS_1 0.51 44.0 3.22e-01 98.6% 50.0%
4955477 1.1.3.0 beta barrels › cradle loop barrel › RIFT-related › AbrB 0.51 33.0 3.27e-01 85.5% 61.3%