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EF579802.1__ABR10478.1__X__00048

Bact-Vir

EF579802.1__ABR10478.1__X__00048

Identity

Accession:
EF579802 ↗
Kingdom:
phage

Quality

71.4 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Minunavirus› Microbacterium_phage_Min1

TaxID: 446529

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 34-116
PDB
Domain cluster: rep: OR253904.1__WNM74109.1__SEA_NERGAL_18__00019__D52-135
CATH (19)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2ymsC00 2.40.10.480 Mainly Beta › Beta Barrel › Thrombin, subunit H › 0.75 32.0 3.37e-01 71.1% 44.0%
5ajiB02 2.30.30.60 Mainly Beta › Roll › SH3 type barrels. › 0.64 28.0 3.55e-01 89.2% 68.0%
3d6wB02 2.20.25.10 Mainly Beta › Single Sheet › N-terminal domain of TfIIb › 0.64 30.0 4.14e-01 97.6% 94.9%
2pmrA00 1.20.1270.90 Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › AF1782-like 0.62 35.0 3.67e-01 96.4% 60.5%
1fbnA01 3.30.200.20 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 0.61 34.0 4.06e-01 96.4% 86.3%
4pdyA01 3.30.200.20 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 0.56 38.0 3.64e-01 71.1% 74.7%
2hbpA00 2.30.30.700 Mainly Beta › Roll › SH3 type barrels. › SLA1 homology domain 1 0.56 31.0 3.45e-01 100.0% 66.7%
3hr8A02 3.30.250.10 Alpha Beta › 2-Layer Sandwich › Rec A Protein; domain 2 › RecA protein, C-terminal domain 0.54 32.0 3.34e-01 88.0% 62.7%
6f0cA00 1.10.630.10 Mainly Alpha › Orthogonal Bundle › Cytochrome p450 › Cytochrome P450 0.54 45.0 3.05e-01 100.0% 72.8%
4py5A01 3.30.310.10 Alpha Beta › 2-Layer Sandwich › TATA-Binding Protein › TATA-Binding Protein 0.53 30.0 3.20e-01 86.7% 62.5%
2ogqA01 3.30.1120.30 Alpha Beta › 2-Layer Sandwich › Arylsulfatase, C-terminal domain › POLO box domain 0.52 41.0 3.62e-01 98.8% 57.9%
2b67A00 3.40.109.10 Alpha Beta › 3-Layer(aba) Sandwich › NADH Oxidase › NADH Oxidase 0.51 45.0 3.32e-01 94.0% 52.5%
4z3xA03 1.10.569.10 Mainly Alpha › Orthogonal Bundle › Aldehyde Ferredoxin Oxidoreductase Protein, subunit A; domain 2 › Aldehyde Ferredoxin Oxidoreductase Protein, subunit A, domain 2 0.51 37.0 2.90e-01 75.9% 86.0%
3i6eA01 3.30.390.10 Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › Enolase-like, N-terminal domain 0.51 45.0 4.20e-01 100.0% 78.6%
5xpyA02 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.51 45.0 4.12e-01 100.0% 81.5%
3sjnA01 3.30.390.10 Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › Enolase-like, N-terminal domain 0.50 45.0 4.03e-01 100.0% 74.8%
6hoxA01 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.50 39.0 2.92e-01 86.7% 99.6%
4gnxA00 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.50 33.0 3.02e-01 94.0% 51.9%
3q45A01 3.30.390.10 Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › Enolase-like, N-terminal domain 0.50 45.0 3.93e-01 100.0% 85.7%
ECOD (16)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
5012777 205.1.1.16 ↗ a+b two layers › 4Fe-4S ferredoxin › 4Fe-4S ferredoxin › 4Fe-4S ferredoxin › Fer4_7 0.63 39.0 3.88e-01 100.0% 60.0%
3627455 3906.1.1.1 ↗ extended segments › Mitoribosomal protein mL52 › Mitoribosomal protein mL52 › Mitoribosomal protein mL52 › MRPL52 0.63 44.0 4.72e-01 100.0% 87.1%
5032493 56.2.1.1 ↗ beta sandwiches › Epsilon subunit of F1F0-ATP synthase-N › CO dehydrogenase accessory protein CooT › CO dehydrogenase accessory protein CooT › CooT 0.62 31.0 3.68e-01 98.8% 69.5%
4157284 9.7.1.1 ↗ beta barrels › Lipocalins/Streptavidin › Metalloprotease inhibitor › Metalloprotease inhibitor › Inh 0.61 34.0 3.11e-01 100.0% 42.9%
4026981 101.1.9.0 ↗ alpha arrays › HTH › HTH › Putative DNA-binding domain 0.59 28.0 2.99e-01 88.0% 49.3%
4928641 101.1.2.70 ↗ alpha arrays › HTH › HTH › winged helix domain › PqqD 0.58 41.0 4.36e-01 95.2% 84.0%
3710697 375.3.1.2 ↗ few secondary structure elements › Rubredoxin-like › CSL zinc finger › CSL zinc finger › zf-CSL 0.57 38.0 3.96e-01 100.0% 74.7%
4983508 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.57 39.0 4.27e-01 94.0% 85.7%
4617287 101.11.1.1 ↗ alpha arrays › HTH › Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domain 3 › Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domain 3 › PNPase 0.56 43.0 4.26e-01 100.0% 76.7%
3555742 103.1.1.0 ↗ alpha arrays › RuvA-C › RuvA-C, UBA, CRAL/TRIO-N, HBS1 › UBA-like domain 0.55 35.0 3.54e-01 97.6% 63.5%
3010831 4967.1.1.14 ↗ alpha bundles › helical bundle domain in reverse transcriptase-like polymerases › helical bundle domain in reverse transcriptase-like polymerases › helical bundle domain in reverse transcriptase-like polymerases › Flavi_NS5_thumb 0.54 45.0 3.45e-01 96.4% 69.5%
None — 0.54 44.0 3.45e-01 96.4% 69.9%
4218376 241.2.1.1 ↗ a+b two layers › Type III secretory system chaperone-like › Frataxin-like › Frataxin-like › Frataxin_Cyay 0.51 39.0 3.73e-01 83.1% 72.0%
2323952 4.29.1.1 ↗ beta barrels › SH3 › Pyrrolysyl-tRNA synthetase tRNA binding domain › Pyrrolysyl-tRNA synthetase tRNA binding domain › PF31240 0.51 33.0 3.33e-01 88.0% 64.0%
143776 218.1.1.1 ↗ a+b two layers › Enolase-N/ribosomal protein › Enolase N-terminal domain-like › Enolase N-terminal domain-like › MR_MLE_N 0.50 45.0 3.93e-01 100.0% 69.5%
3965099 241.2.1.1 ↗ a+b two layers › Type III secretory system chaperone-like › Frataxin-like › Frataxin-like › Frataxin_Cyay 0.50 40.0 3.77e-01 88.0% 72.4%