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EF579802.1__ABR10507.1__X__00077

Bact-Vir

EF579802.1__ABR10507.1__X__00077

Identity

Accession:
EF579802 ↗
Kingdom:
phage

Quality

90.0 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Minunavirus› Microbacterium_phage_Min1

TaxID: 446529

Cluster

View cluster (7 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 7-17_30-120
PDB
Domain cluster: rep: IMGVR_UViG_3300029595_000275-3300029595-Ga0245140_10195616__D180-260
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF08000.18 best bPH_1 100.3 1.00e-28 96.1% 74.6%
CATH (29)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3dcxA00 2.30.29.50 Mainly Beta › Roll › PH-domain like › Bacterial Pleckstrin homology domain 0.90 84.0 7.92e-01 97.1% 99.1%
2yf0A01 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.78 63.0 6.87e-01 84.3% 100.0%
2d9wA01 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.78 66.0 6.41e-01 88.2% 100.0%
3b77A01 2.30.29.50 Mainly Beta › Roll › PH-domain like › Bacterial Pleckstrin homology domain 0.76 59.0 5.99e-01 82.4% 100.0%
3pg7A02 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.76 65.0 6.30e-01 90.2% 86.4%
3qwmA00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.75 64.0 5.88e-01 89.2% 85.0%
3fssA01 2.30.29.120 Mainly Beta › Roll › PH-domain like › 0.74 62.0 5.59e-01 89.2% 94.1%
2aehA03 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.73 63.0 6.09e-01 90.2% 87.4%
2dfkC02 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.73 61.0 5.46e-01 89.2% 76.6%
4ioyX02 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.73 61.0 5.85e-01 89.2% 80.9%
1y5oA00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.72 62.0 5.92e-01 91.2% 94.8%
7byjA02 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.71 58.0 5.98e-01 86.3% 96.8%
5umsA02 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.70 59.0 5.96e-01 90.2% 93.1%
1v61A00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.70 60.0 5.48e-01 92.2% 93.9%
1f9qD00 2.40.50.40 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.69 39.0 4.76e-01 100.0% 86.4%
1icwB00 2.40.50.40 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.68 39.0 4.79e-01 99.0% 87.9%
2p25A01 3.10.180.10 Alpha Beta › Roll › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase; domain 1 › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase, domain 1 0.68 37.0 3.51e-01 85.3% 44.5%
3oa4A01 3.10.180.10 Alpha Beta › Roll › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase; domain 1 › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase, domain 1 0.68 36.0 3.34e-01 85.3% 39.8%
5kvsA02 3.30.360.10 Alpha Beta › 2-Layer Sandwich › Dihydrodipicolinate Reductase; domain 2 › Dihydrodipicolinate Reductase; domain 2 0.67 39.0 3.35e-01 86.3% 36.4%
1e8oA00 3.30.720.10 Alpha Beta › 2-Layer Sandwich › Signal recognition particle alu RNA binding heterodimer, srp9/1 › Signal recognition particle alu RNA binding heterodimer, srp9/1 0.67 46.0 5.22e-01 100.0% 97.3%
2qh0A00 3.10.180.10 Alpha Beta › Roll › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase; domain 1 › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase, domain 1 0.65 36.0 3.31e-01 85.3% 41.1%
7q5yB01 3.30.460.80 Alpha Beta › 2-Layer Sandwich › Beta Polymerase; domain 2 › NADH:ubiquinone oxidoreductase Nqo5 subunit 0.62 44.0 4.17e-01 100.0% 62.5%
1e8oD00 3.30.720.10 Alpha Beta › 2-Layer Sandwich › Signal recognition particle alu RNA binding heterodimer, srp9/1 › Signal recognition particle alu RNA binding heterodimer, srp9/1 0.61 42.0 4.70e-01 100.0% 94.7%
2ltsA00 3.30.160.20 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › 0.59 39.0 4.25e-01 95.1% 80.2%
1imuA00 3.30.160.100 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Ribosome hibernation promotion factor-like 0.55 32.0 3.18e-01 79.4% 53.3%
1k4nA00 3.10.180.10 Alpha Beta › Roll › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase; domain 1 › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase, domain 1 0.55 31.0 2.61e-01 83.3% 30.6%
2y8tA03 2.10.70.70 Mainly Beta › Ribbon › Complement Module; domain 1 › 0.55 25.0 3.16e-01 79.4% 70.9%
7x4nE01 3.40.850.10 Alpha Beta › 3-Layer(aba) Sandwich › Kinesin › Kinesin motor domain 0.52 41.0 2.89e-01 85.3% 50.3%
2bbhA01 3.30.460.20 Alpha Beta › 2-Layer Sandwich › Beta Polymerase; domain 2 › CorA soluble domain-like 0.52 38.0 3.37e-01 84.3% 53.0%
ECOD (79)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3283795 220.1.1.17 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › bPH_1 0.92 83.0 7.94e-01 95.1% 99.1%
3255173 220.1.1.58 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PH-GRAM_MTMR6-like 0.83 70.0 6.74e-01 89.2% 86.1%
5031433 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.82 68.0 6.88e-01 87.3% 94.0%
4953145 220.1.1.17 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › bPH_1 0.82 68.0 6.58e-01 89.2% 91.3%
5077089 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.81 55.0 6.53e-01 95.1% 100.0%
4338151 220.1.1.87 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › bPH_3 0.81 70.0 6.12e-01 91.2% 95.2%
4304407 220.1.1.8 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › GRAM 0.81 71.0 6.34e-01 92.2% 88.9%
3606311 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.81 57.0 6.56e-01 98.0% 98.7%
135359 220.1.1.17 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › bPH_1 0.80 71.0 6.58e-01 95.1% 91.2%
3263954 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.80 68.0 6.17e-01 89.2% 78.5%
4025181 220.1.1.8 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › GRAM 0.79 69.0 6.70e-01 91.2% 88.2%
5063609 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.79 67.0 6.58e-01 89.2% 89.8%
3830123 220.1.1.30 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PH_BEACH 0.79 67.0 6.03e-01 89.2% 79.3%
3247727 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.79 67.0 5.94e-01 89.2% 65.7%
3785371 220.1.1.8 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › GRAM 0.79 67.0 5.99e-01 89.2% 80.0%
3836701 220.1.1.8 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › GRAM 0.79 68.0 5.94e-01 92.2% 86.5%
3423400 220.1.1.8 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › GRAM 0.78 66.0 6.13e-01 90.2% 95.2%
3351369 220.1.1.8 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › GRAM 0.78 58.0 5.42e-01 77.5% 92.8%
3249874 220.1.1.28 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › hSac2 0.78 67.0 5.72e-01 92.2% 83.1%
3801512 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.78 66.0 6.26e-01 90.2% 81.7%
3316909 220.1.1.8 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › GRAM 0.78 67.0 5.98e-01 92.2% 90.7%
3869786 220.1.1.8 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › GRAM 0.77 66.0 5.91e-01 90.2% 87.0%
3407757 220.1.1.8 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › GRAM 0.77 67.0 6.10e-01 91.2% 87.7%
3788477 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.77 66.0 6.29e-01 89.2% 92.2%
4586498 220.1.1.1 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PH 0.77 66.0 5.98e-01 89.2% 75.4%
3704470 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.77 64.0 5.73e-01 88.2% 91.4%
3311131 220.1.1.8 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › GRAM 0.77 68.0 5.52e-01 95.1% 80.3%
3643995 220.1.1.8 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › GRAM 0.77 67.0 5.80e-01 95.1% 96.1%
3659150 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.77 64.0 6.16e-01 88.2% 98.3%
3245139 220.1.1.28 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › hSac2 0.76 66.0 5.70e-01 93.1% 85.2%
3555102 220.1.1.1 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PH 0.76 65.0 6.12e-01 89.2% 97.5%
3685219 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.76 64.0 5.63e-01 89.2% 76.6%
1141835 220.1.1.17 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › bPH_1 0.76 68.0 6.43e-01 98.0% 99.2%
4926953 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.76 65.0 6.27e-01 92.2% 99.1%
3487057 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.76 65.0 5.83e-01 90.2% 84.4%
3259130 220.1.1.1 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PH 0.76 63.0 6.44e-01 87.3% 97.0%
3742074 220.1.1.1 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PH 0.76 67.0 5.93e-01 93.1% 92.8%
3478713 220.1.1.8 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › GRAM 0.76 65.0 6.14e-01 91.2% 94.2%
3251345 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.76 63.0 5.63e-01 89.2% 74.3%
3631346 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.76 63.0 5.46e-01 89.2% 88.2%
3313202 220.1.1.181 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PH_ULP 0.75 65.0 6.02e-01 94.1% 93.8%
3602032 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.75 64.0 5.44e-01 91.2% 95.0%
4169409 220.1.1.126 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › Ycf4 0.75 63.0 6.08e-01 92.2% 94.7%
3608300 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.74 62.0 5.41e-01 89.2% 90.0%
4025365 220.1.1.74 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PIG-H 0.74 65.0 6.33e-01 95.1% 93.6%
3664734 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.74 66.0 5.45e-01 95.1% 91.2%
3849761 220.1.1.1 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PH 0.74 62.0 4.28e-01 90.2% 35.4%
3923731 220.1.1.35 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › IQ_SEC7_PH 0.73 62.0 5.27e-01 90.2% 77.5%
4047317 220.1.1.126 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › Ycf4 0.73 62.0 6.05e-01 93.1% 94.7%
3803797 220.1.1.181 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PH_ULP 0.73 62.0 5.86e-01 91.2% 92.5%
4051690 220.1.1.126 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › Ycf4 0.73 60.0 5.97e-01 89.2% 92.4%
3798461 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.73 63.0 5.91e-01 91.2% 91.7%
3267359 220.1.1.1 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PH 0.73 62.0 5.46e-01 90.2% 80.0%
4276145 220.1.1.126 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › Ycf4 0.73 61.0 6.03e-01 92.2% 94.5%
4255411 220.1.1.126 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › Ycf4 0.73 60.0 5.88e-01 89.2% 90.9%
3512572 220.1.1.125 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PH_PLEKHM2 0.73 64.0 5.66e-01 95.1% 85.5%
4484723 220.1.1.126 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › Ycf4 0.73 58.0 5.84e-01 87.3% 94.2%
3347210 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.73 52.0 5.55e-01 73.5% 96.6%
3973606 243.3.1.0 ↗ a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin 0.72 34.0 4.61e-01 73.5% 85.5%
3211748 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.72 61.0 5.45e-01 90.2% 86.4%
3617870 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.72 61.0 5.37e-01 90.2% 82.8%
3920905 220.1.1.19 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › Rttp106-like_middle 0.71 59.0 5.49e-01 95.1% 72.6%
3721965 220.1.1.74 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PIG-H 0.70 60.0 5.79e-01 95.1% 96.5%
3829886 220.1.1.19 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › Rttp106-like_middle 0.69 51.0 5.70e-01 77.5% 100.0%
3883586 1170.1.1.1 ↗ beta barrels › IL8-related › IL8-related › IL8 › IL8 0.69 40.0 4.62e-01 100.0% 78.7%
4137634 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.68 56.0 5.85e-01 89.2% 94.7%
3887159 1170.1.1.1 ↗ beta barrels › IL8-related › IL8-related › IL8 › IL8 0.67 38.0 4.60e-01 99.0% 86.2%
3945590 298.1.1.21 ↗ a+b two layers › FwdE/GAPDH domain-like › Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain › Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain › Irp3-like_C 0.67 39.0 3.37e-01 86.3% 36.9%
4205423 1170.1.1.1 ↗ beta barrels › IL8-related › IL8-related › IL8 › IL8 0.65 39.0 4.45e-01 100.0% 80.0%
3592494 211.1.1.0 ↗ a+b two layers › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase 0.65 37.0 3.25e-01 85.3% 38.6%
None — 0.64 35.0 3.13e-01 85.3% 37.3%
3995633 211.1.1.7 ↗ a+b two layers › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase_4 0.64 34.0 3.18e-01 85.3% 40.0%
5014027 211.1.1.0 ↗ a+b two layers › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase 0.61 37.0 3.98e-01 86.3% 68.9%
3499697 211.1.1.7 ↗ a+b two layers › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase_4 0.56 32.0 2.88e-01 85.3% 38.6%
3276089 316.1.1.13 ↗ a+b three layers › Nucleotidyltransferase-like › Nucleotidyltransferase › Nucleotidyltransferase › RelA_SpoT 0.55 36.0 3.07e-01 86.3% 40.0%
5001231 2004.1.1.0 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases 0.53 33.0 2.71e-01 85.3% 31.8%
5052595 5.1.5.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed 0.51 40.0 2.65e-01 84.3% 51.0%
3618566 211.1.1.0 ↗ a+b two layers › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase 0.51 36.0 3.52e-01 84.3% 66.4%
3501716 7541.1.1.1 ↗ a/b three-layered sandwiches › Molybdenum cofactor biosynthesis proteins › Molybdenum cofactor biosynthesis proteins › Molybdenum cofactor biosynthesis proteins › MoCF_biosynth 0.50 40.0 3.39e-01 85.3% 71.8%