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EF583821.1__ABS83605.1__0305phi8-36p044__00180
Bact-VirEF583821.1__ABS83605.1__0305phi8-36p044__00180
Identity
- Accession:
- EF583821 ↗
- Kingdom:
- phage
Quality
56.6
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 179-219
Domain cluster:
representative
CATH (16)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1y02A01 | 1.10.720.140 | Mainly Alpha › Orthogonal Bundle › Transcription Termination Factor Rho, Rna-binding Domain; Chain A, Domain 1 › | 0.81 | 67.0 | 5.44e-01 | 97.6% | 50.0% |
| 1e7lA02 | 1.10.720.10 | Mainly Alpha › Orthogonal Bundle › Transcription Termination Factor Rho, Rna-binding Domain; Chain A, Domain 1 › | 0.75 | 62.0 | 5.77e-01 | 100.0% | 72.7% |
| 2kvdA02 | 1.10.720.30 | Mainly Alpha › Orthogonal Bundle › Transcription Termination Factor Rho, Rna-binding Domain; Chain A, Domain 1 › SAP domain | 0.72 | 61.0 | 5.54e-01 | 100.0% | 72.4% |
| 2dk4A00 | 4.10.280.110 | Few Secondary Structures › Irregular › MYOD Basic-Helix-Loop-Helix Domain, subunit B › Pre-mRNA processing factor 4 domain | 0.63 | 50.0 | 4.32e-01 | 100.0% | 55.3% |
| 2m7bA00 | 1.10.10.1920 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › | 0.58 | 43.0 | 3.60e-01 | 82.9% | 70.1% |
| 4u7bA01 | 1.10.10.1450 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › | 0.58 | 41.0 | 3.94e-01 | 78.0% | 68.6% |
| 1qd1B02 | 3.30.70.670 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Formiminotransferase, C-terminal subdomain | 0.56 | 45.0 | 3.24e-01 | 100.0% | 28.3% |
| 2qkwA00 | 1.20.1270.140 | Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › AvrPto | 0.56 | 42.0 | 3.44e-01 | 97.6% | 85.1% |
| 7neaA01 | 3.30.470.10 | Alpha Beta › 2-Layer Sandwich › D-amino Acid Aminotransferase; Chain A, domain 1 › Aminotransferase class 4, branched-chain amino acid transferase, N-terminal domain | 0.54 | 43.0 | 3.10e-01 | 100.0% | 30.6% |
| 4k35A04 | 1.20.5.420 | Mainly Alpha › Up-down Bundle › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › Immunoglobulin FC, subunit C | 0.53 | 39.0 | 3.68e-01 | 80.5% | 92.0% |
| 3lulA01 | 3.30.470.10 | Alpha Beta › 2-Layer Sandwich › D-amino Acid Aminotransferase; Chain A, domain 1 › Aminotransferase class 4, branched-chain amino acid transferase, N-terminal domain | 0.53 | 39.0 | 3.08e-01 | 95.1% | 54.5% |
| 1i24A02 | 3.90.25.10 | Alpha Beta › Alpha-Beta Complex › UDP-galactose 4-epimerase; domain 1 › UDP-galactose 4-epimerase, domain 1 | 0.52 | 40.0 | 2.86e-01 | 90.2% | 83.1% |
| 4v2kA02 | 1.10.760.10 | Mainly Alpha › Orthogonal Bundle › Cytochrome Bc1 Complex; Chain D, domain 2 › Cytochrome c-like domain | 0.52 | 43.0 | 3.23e-01 | 92.7% | 87.3% |
| 3bhqA00 | 1.10.357.10 | Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2 | 0.51 | 42.0 | 2.72e-01 | 95.1% | 21.8% |
| 5jtfB00 | 3.40.630.30 | Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) | 0.51 | 41.0 | 2.80e-01 | 95.1% | 24.0% |
| 2iqjB00 | 1.10.220.150 | Mainly Alpha › Orthogonal Bundle › Annexin V; domain 1 › Arf GTPase activating protein | 0.51 | 35.0 | 2.76e-01 | 82.9% | 61.0% |
ECOD (20)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 5053068 | 130.1.1.3 ↗ | alpha arrays › LEM/SAP HeH motif-like › LEM/SAP HeH motif › LEM/SAP HeH motif › Rho_N | 0.84 | 69.0 | 7.06e-01 | 95.1% | 95.0% |
| 3172891 | 130.1.1.16 ↗ | alpha arrays › LEM/SAP HeH motif-like › LEM/SAP HeH motif › LEM/SAP HeH motif › Ish1 | 0.84 | 72.0 | 6.78e-01 | 100.0% | 80.0% |
| 4999712 | 601.7.1.20 ↗ | alpha bundles › Four-helical up-and-down bundle › HEPN › Nucleotidyltransferase substrate binding subunit/domain › Abi_C | 0.82 | 66.0 | 4.44e-01 | 87.8% | 25.7% |
| 3635200 | 130.1.1.0 ↗ | alpha arrays › LEM/SAP HeH motif-like › LEM/SAP HeH motif › LEM/SAP HeH motif | 0.80 | 63.0 | 5.83e-01 | 100.0% | 67.3% |
| 3191284 | 130.1.1.16 ↗ | alpha arrays › LEM/SAP HeH motif-like › LEM/SAP HeH motif › LEM/SAP HeH motif › Ish1 | 0.79 | 66.0 | 6.27e-01 | 100.0% | 80.0% |
| 3392993 | 130.1.1.0 ↗ | alpha arrays › LEM/SAP HeH motif-like › LEM/SAP HeH motif › LEM/SAP HeH motif | 0.79 | 69.0 | 6.48e-01 | 100.0% | 86.0% |
| 3797432 | 130.1.1.0 ↗ | alpha arrays › LEM/SAP HeH motif-like › LEM/SAP HeH motif › LEM/SAP HeH motif | 0.76 | 66.0 | 6.10e-01 | 100.0% | 79.2% |
| 3511721 | 130.1.1.0 ↗ | alpha arrays › LEM/SAP HeH motif-like › LEM/SAP HeH motif › LEM/SAP HeH motif | 0.76 | 64.0 | 6.30e-01 | 100.0% | 95.6% |
| 3977563 | 102.7.1.1 ↗ | alpha arrays › HhH/H2TH › Baseplate wedge protein gp7 domain IV › Baseplate wedge protein gp7 domain IV › Tail_P2_I | 0.69 | 54.0 | 3.96e-01 | 95.1% | 30.0% |
| 3274349 | 130.1.1.6 ↗ | alpha arrays › LEM/SAP HeH motif-like › LEM/SAP HeH motif › LEM/SAP HeH motif › PRP4 | 0.67 | 49.0 | 5.09e-01 | 82.9% | 100.0% |
| 1031040 | 101.1.19.1 ↗ | alpha arrays › HTH › HTH › Bacteriophage lambda ea8.5-related › Lambda_ea8_5 | 0.58 | 43.0 | 3.60e-01 | 82.9% | 70.1% |
| 4825675 | 2500.1.1.0 ↗ | a/b barrels › Ten stranded beta/alpha barrel › Ten stranded beta/alpha barrel › Ten stranded beta/alpha barrel | 0.58 | 37.0 | 2.31e-01 | 100.0% | 10.7% |
| 4486448 | 4020.1.1.1 ↗ | a+b two layers › a+b domain in D-aminoacid aminotransferase-like PLP-dependent enzymes › a+b domain in D-aminoacid aminotransferase-like PLP-dependent enzymes › a+b domain in D-aminoacid aminotransferase-like PLP-dependent enzymes › Aminotran_4 | 0.56 | 45.0 | 3.28e-01 | 100.0% | 32.2% |
| 4115268 | 4137.1.1.1 ↗ | a+b three layers › YehU-like › YehU-like › YehU-like › UPF0270 | 0.55 | 42.0 | 3.84e-01 | 100.0% | 97.1% |
| 3293956 | 610.2.1.1 ↗ | alpha arrays › ERP29 C domain-like › Helical domain of Sec23/24 › Helical domain of Sec23/24 › Sec23_helical | 0.54 | 40.0 | 2.94e-01 | 85.4% | 73.1% |
| 4429159 | 285.1.1.1 ↗ | a+b three layers › N-acetylmuramoyl-L-alanine amidase-like › N-acetylmuramoyl-L-alanine amidase-like › N-acetylmuramoyl-L-alanine amidase-like › Amidase_2 | 0.54 | 41.0 | 2.40e-01 | 85.4% | 39.1% |
| 4946167 | 592.2.1.0 ↗ | alpha arrays › PWI domain-like › YugE-like › YugE-like | 0.52 | 37.0 | 2.69e-01 | 82.9% | 45.8% |
| 4066690 | 633.12.1.0 ↗ | alpha bundles › Bromodomain-like › Ta0600-like › Ta0600-like | 0.51 | 37.0 | 2.96e-01 | 85.4% | 62.0% |
| 4552247 | 101.1.1.407 ↗ | alpha arrays › HTH › HTH › Three-helical HTH › PF31276 | 0.51 | 40.0 | 3.93e-01 | 92.7% | 91.1% |
| 3482597 | 5076.1.1.0 ↗ | alpha complex topology › Mitochondrial ADP/ATP carrier-like › Mitochondrial ADP/ATP carrier › Mitochondrial ADP/ATP carrier | 0.50 | 41.0 | 2.67e-01 | 97.6% | 18.2% |
D2
high
residues 305-350
Domain cluster:
representative
CATH (25)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1e7lA02 | 1.10.720.10 | Mainly Alpha › Orthogonal Bundle › Transcription Termination Factor Rho, Rna-binding Domain; Chain A, Domain 1 › | 0.83 | 67.0 | 6.32e-01 | 100.0% | 74.5% |
| 2ld7A00 | 6.10.160.20 | Special › Helix non-globular › Transcription Termination Factor Rho, Rna-binding Domain; Chain A, Domain 1 › | 0.71 | 55.0 | 4.49e-01 | 100.0% | 43.6% |
| 2w4sA00 | 1.10.10.1440 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › PHAX RNA-binding domain | 0.64 | 49.0 | 4.04e-01 | 84.8% | 46.5% |
| 2dk4A00 | 4.10.280.110 | Few Secondary Structures › Irregular › MYOD Basic-Helix-Loop-Helix Domain, subunit B › Pre-mRNA processing factor 4 domain | 0.63 | 51.0 | 4.44e-01 | 100.0% | 57.9% |
| 1kblA05 | 1.20.80.30 | Mainly Alpha › Up-down Bundle › Acyl-CoA Binding Protein › | 0.63 | 48.0 | 4.14e-01 | 95.7% | 82.0% |
| 3hibA01 | 1.10.3380.10 | Mainly Alpha › Orthogonal Bundle › Sec63 N-terminal domain-like fold › Sec63 N-terminal domain-like domain | 0.62 | 47.0 | 3.66e-01 | 91.3% | 34.7% |
| 1m3qA02 | 1.10.1670.10 | Mainly Alpha › Orthogonal Bundle › Endonuclease Iii, domain 2 › Helix-hairpin-Helix base-excision DNA repair enzymes (C-terminal) | 0.60 | 45.0 | 3.95e-01 | 91.3% | 53.8% |
| 1ebdC00 | 4.10.320.10 | Few Secondary Structures › Irregular › Dihydrolipoamide Transferase › E3-binding domain | 0.59 | 44.0 | 4.67e-01 | 82.6% | 95.1% |
| 3ufeA02 | 1.20.58.1950 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.58 | 45.0 | 4.35e-01 | 89.1% | 92.5% |
| 4qozB02 | 3.30.420.10 | Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › Ribonuclease H-like superfamily/Ribonuclease H | 0.58 | 50.0 | 3.28e-01 | 100.0% | 36.0% |
| 2wghA00 | 3.20.70.20 | Alpha Beta › Alpha-Beta Barrel › Anaerobic Ribonucleotide-triphosphate Reductase Large Chain › | 0.56 | 41.0 | 2.30e-01 | 80.4% | 6.8% |
| 3gb0A01 | 3.40.630.10 | Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Zn peptidases | 0.55 | 45.0 | 2.93e-01 | 100.0% | 91.2% |
| 3h87B00 | 3.40.50.1010 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 5'-nuclease | 0.55 | 47.0 | 3.43e-01 | 100.0% | 75.4% |
| 2lfhA00 | 4.10.280.10 | Few Secondary Structures › Irregular › MYOD Basic-Helix-Loop-Helix Domain, subunit B › Helix-loop-helix DNA-binding domain | 0.55 | 45.0 | 4.07e-01 | 97.8% | 72.1% |
| 5zzjA02 | 1.10.600.10 | Mainly Alpha › Orthogonal Bundle › Farnesyl Diphosphate Synthase › Farnesyl Diphosphate Synthase | 0.53 | 42.0 | 2.67e-01 | 100.0% | 69.1% |
| 3terA00 | 1.10.287.3550 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › | 0.53 | 39.0 | 2.90e-01 | 100.0% | 31.1% |
| 3wfdC00 | 1.10.760.10 | Mainly Alpha › Orthogonal Bundle › Cytochrome Bc1 Complex; Chain D, domain 2 › Cytochrome c-like domain | 0.53 | 40.0 | 2.93e-01 | 84.8% | 49.3% |
| 3t0yA01 | 1.10.1740.10 | Mainly Alpha › Orthogonal Bundle › Rna Polymerase Sigma Factor; Chain: A › RNA polymerase sigma factor, region 2, helix turn helix motif | 0.53 | 38.0 | 3.52e-01 | 82.6% | 86.4% |
| 4p72A04 | 3.30.56.10 | Alpha Beta › 2-Layer Sandwich › Phenylalanyl-tRNA Synthetase; Chain B, domain 1 › | 0.53 | 44.0 | 3.80e-01 | 95.7% | 78.9% |
| 2aswA00 | 1.10.8.500 | Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › HAMP domain in histidine kinase | 0.53 | 41.0 | 3.86e-01 | 84.8% | 76.8% |
| 5hpfA00 | 3.30.450.40 | Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › GAF domain | 0.52 | 36.0 | 2.57e-01 | 78.3% | 36.0% |
| 3keyA01 | 1.10.10.1080 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Stn1, N-terminal wHTH domain | 0.52 | 39.0 | 3.32e-01 | 100.0% | 47.1% |
| 5idmA00 | 3.30.565.10 | Alpha Beta › 2-Layer Sandwich › Heat Shock Protein 90 › Histidine kinase-like ATPase, C-terminal domain | 0.52 | 42.0 | 2.96e-01 | 100.0% | 87.0% |
| 4gzcA00 | 1.25.40.90 | Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › | 0.52 | 40.0 | 3.01e-01 | 93.5% | 51.5% |
| 7xc2A02 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.51 | 42.0 | 3.35e-01 | 100.0% | 69.8% |
ECOD (15)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3916320 | 3773.1.1.1 ↗ | few secondary structure elements › E3 ligase HOIP C-terminal domain › E3 ligase HOIP C-terminal domain › E3 ligase HOIP C-terminal domain › E3_UbLigase_RBR | 0.79 | 70.0 | 5.27e-01 | 100.0% | 43.6% |
| 3699757 | 632.18.1.0 ↗ | alpha bundles › immunoglobulin/albumin-binding domain-like › hypothetical protein PA2901 › hypothetical protein PA2901 | 0.78 | 67.0 | 5.90e-01 | 100.0% | 81.4% |
| 3943133 | 130.1.1.0 ↗ | alpha arrays › LEM/SAP HeH motif-like › LEM/SAP HeH motif › LEM/SAP HeH motif | 0.73 | 59.0 | 5.97e-01 | 100.0% | 91.1% |
| 3707811 | 109.4.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat | 0.70 | 60.0 | 3.52e-01 | 97.8% | 12.0% |
| 4223595 | 103.1.1.6 ↗ | alpha arrays › RuvA-C › RuvA-C, UBA, CRAL/TRIO-N, HBS1 › UBA-like domain › RuvA_C | 0.63 | 47.0 | 4.50e-01 | 82.6% | 89.1% |
| 2876157 | 101.1.9.105 ↗ | alpha arrays › HTH › HTH › Putative DNA-binding domain › PF30176 | 0.62 | 49.0 | 4.76e-01 | 93.5% | 79.2% |
| 5038976 | 2492.1.1.1 ↗ | a+b three layers › Cytidine deaminase-like › Cytidine deaminase-like › Cytidine deaminase-like › dCMP_cyt_deam_1 | 0.59 | 42.0 | 2.91e-01 | 78.3% | 42.3% |
| 4999712 | 601.7.1.20 ↗ | alpha bundles › Four-helical up-and-down bundle › HEPN › Nucleotidyltransferase substrate binding subunit/domain › Abi_C | 0.57 | 47.0 | 3.49e-01 | 100.0% | 95.7% |
| 3840055 | 1180.1.1.1 ↗ | alpha bundles › Flagellar biosynthetic protein FliP periplasmic domain › Flagellar biosynthetic protein FliP periplasmic domain › Flagellar biosynthetic protein FliP periplasmic domain › FliP | 0.55 | 43.0 | 3.56e-01 | 100.0% | 45.9% |
| 3176966 | 868.1.1.0 ↗ | a+b complex topology › mRNA triphosphatase CET1-related › mRNA triphosphatase CET1-related › mRNA triphosphatase CET1-related | 0.55 | 42.0 | 2.60e-01 | 87.0% | 85.3% |
| 3569684 | 108.1.1.95 ↗ | alpha arrays › EF-hand › EF-hand-related › EF-hand › CCD48 | 0.54 | 45.0 | 3.63e-01 | 95.7% | 61.1% |
| 3306934 | 632.1.1.0 ↗ | alpha bundles › immunoglobulin/albumin-binding domain-like › Families 57/38 glycoside transferase middle domain › Families 57/38 glycoside transferase middle domain | 0.54 | 41.0 | 3.37e-01 | 97.8% | 90.0% |
| 3967708 | 179.1.1.1 ↗ | alpha bundles › CO dehydrogenase ISP C-domain like › CO dehydrogenase ISP C-domain like › CO dehydrogenase ISP C-domain like › Fer2_2 | 0.52 | 38.0 | 3.13e-01 | 80.4% | 77.8% |
| 5030079 | 2002.1.1.60 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › AP_endonuc_2 | 0.52 | 43.0 | 2.51e-01 | 97.8% | 39.8% |
| 3467916 | 148.1.1.0 ↗ | alpha arrays › Histone-like › Histone-related › Histone | 0.52 | 44.0 | 3.25e-01 | 97.8% | 36.0% |
D3
medium
residues 12-105