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EF583821.1__ABS83629.1__0305phi8-36p069__00205
Bact-VirEF583821.1__ABS83629.1__0305phi8-36p069__00205
Identity
- Accession:
- EF583821 ↗
- Kingdom:
- phage
Quality
83.3
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 13-77
Domain cluster:
representative
CATH (32)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2rn7A01 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.82 | 60.0 | 5.97e-01 | 84.6% | 75.8% |
| 1ignB02 | 1.10.10.60 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like | 0.78 | 70.0 | 6.10e-01 | 95.4% | 81.5% |
| 1fexA00 | 1.10.10.60 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like | 0.77 | 57.0 | 5.92e-01 | 78.5% | 89.8% |
| 4fcyA01 | 1.10.10.60 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like | 0.76 | 58.0 | 5.46e-01 | 90.8% | 67.9% |
| 4eqqA02 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.73 | 51.0 | 5.79e-01 | 83.1% | 100.0% |
| 2vmaA00 | 1.20.81.30 | Mainly Alpha › Up-down Bundle › Receptor-associated Protein › Type II secretion system (T2SS), domain F | 0.69 | 58.0 | 4.71e-01 | 92.3% | 74.6% |
| 1on2A01 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.69 | 57.0 | 5.58e-01 | 92.3% | 91.7% |
| 2whnA00 | 1.20.81.30 | Mainly Alpha › Up-down Bundle › Receptor-associated Protein › Type II secretion system (T2SS), domain F | 0.69 | 58.0 | 4.85e-01 | 92.3% | 81.8% |
| 4hhxA00 | 1.20.81.30 | Mainly Alpha › Up-down Bundle › Receptor-associated Protein › Type II secretion system (T2SS), domain F | 0.69 | 58.0 | 4.94e-01 | 92.3% | 87.5% |
| 2isyA01 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.67 | 58.0 | 4.60e-01 | 100.0% | 97.8% |
| 3w6zA02 | 1.10.1040.10 | Mainly Alpha › Orthogonal Bundle › N-(1-d-carboxylethyl)-l-norvaline Dehydrogenase; domain 2 › N-(1-d-carboxylethyl)-l-norvaline Dehydrogenase; domain 2 | 0.66 | 51.0 | 4.20e-01 | 84.6% | 87.6% |
| 2gf2A02 | 1.10.1040.10 | Mainly Alpha › Orthogonal Bundle › N-(1-d-carboxylethyl)-l-norvaline Dehydrogenase; domain 2 › N-(1-d-carboxylethyl)-l-norvaline Dehydrogenase; domain 2 | 0.66 | 56.0 | 4.46e-01 | 95.4% | 88.8% |
| 1mswD04 | 1.10.287.280 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › | 0.65 | 44.0 | 4.19e-01 | 70.8% | 61.5% |
| 2v57A00 | 1.10.357.10 | Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2 | 0.65 | 56.0 | 4.21e-01 | 100.0% | 68.4% |
| 2fe3B01 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.64 | 50.0 | 4.70e-01 | 89.2% | 80.0% |
| 2uyyA02 | 1.10.1040.10 | Mainly Alpha › Orthogonal Bundle › N-(1-d-carboxylethyl)-l-norvaline Dehydrogenase; domain 2 › N-(1-d-carboxylethyl)-l-norvaline Dehydrogenase; domain 2 | 0.62 | 50.0 | 4.19e-01 | 93.8% | 88.6% |
| 1w36C06 | 1.10.10.990 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › | 0.62 | 51.0 | 4.98e-01 | 98.5% | 86.1% |
| 1u9pA00 | 1.10.1220.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant › Met repressor-like | 0.61 | 42.0 | 3.70e-01 | 70.8% | 47.9% |
| 3rrwA02 | 1.20.58.1620 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.60 | 40.0 | 4.00e-01 | 70.8% | 65.7% |
| 2b4lA02 | 3.10.105.10 | Alpha Beta › Roll › Dipeptide-binding Protein; domain 3 › Dipeptide-binding Protein; Domain 3 | 0.60 | 47.0 | 3.51e-01 | 84.6% | 69.4% |
| 4rocA01 | 1.10.472.10 | Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › Cyclin-like | 0.60 | 47.0 | 4.09e-01 | 87.7% | 57.3% |
| 1np3B02 | 6.10.240.10 | Special › Helix non-globular › ProC C-terminal domain-like fold › | 0.58 | 43.0 | 3.29e-01 | 78.5% | 77.9% |
| 5hfiA00 | 3.40.30.10 | Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Glutaredoxin | 0.58 | 48.0 | 3.53e-01 | 98.5% | 35.6% |
| 4g1tA02 | 1.25.40.10 | Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain | 0.56 | 36.0 | 3.76e-01 | 81.5% | 70.5% |
| 2xzmV01 | 1.10.60.20 | Mainly Alpha › Orthogonal Bundle › Diphtheria Toxin Repressor; domain 2 › Ribosomal protein S17 | 0.55 | 41.0 | 4.16e-01 | 87.7% | 90.2% |
| 4bjaA00 | 1.10.490.10 | Mainly Alpha › Orthogonal Bundle › Globin-like › Globins | 0.53 | 43.0 | 3.29e-01 | 98.5% | 57.7% |
| 2ozbB01 | 1.10.287.4070 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › | 0.52 | 46.0 | 3.70e-01 | 100.0% | 69.5% |
| 6hxpA01 | 1.10.230.10 | Mainly Alpha › Orthogonal Bundle › Cytochrome p450-Terp; domain 2 › Cytochrome P450-Terp, domain 2 | 0.52 | 42.0 | 3.76e-01 | 93.8% | 100.0% |
| 3ubcA00 | 1.10.490.10 | Mainly Alpha › Orthogonal Bundle › Globin-like › Globins | 0.52 | 44.0 | 3.61e-01 | 98.5% | 54.2% |
| 7ae2A01 | 1.20.120.580 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › bsu32300-like | 0.52 | 37.0 | 3.12e-01 | 81.5% | 95.6% |
| 2ii2A03 | 1.10.220.10 | Mainly Alpha › Orthogonal Bundle › Annexin V; domain 1 › Annexin | 0.51 | 35.0 | 3.18e-01 | 83.1% | 50.0% |
| 4c2uA04 | 1.10.486.10 | Mainly Alpha › Orthogonal Bundle › PCRA; domain 4 › PCRA; domain 4 | 0.51 | 42.0 | 3.24e-01 | 100.0% | 83.4% |
ECOD (53)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3739094 | 101.1.1.0 ↗ | alpha arrays › HTH › HTH › Three-helical HTH | 0.84 | 60.0 | 6.09e-01 | 78.5% | 75.4% |
| 3267034 | 101.1.1.0 ↗ | alpha arrays › HTH › HTH › Three-helical HTH | 0.82 | 59.0 | 6.62e-01 | 83.1% | 98.0% |
| 166741 | 101.1.1.13 ↗ | alpha arrays › HTH › HTH › Three-helical HTH › HTH_Tnp_1 | 0.82 | 59.0 | 4.98e-01 | 81.5% | 46.3% |
| 3485812 | 101.1.1.0 ↗ | alpha arrays › HTH › HTH › Three-helical HTH | 0.81 | 63.0 | 6.61e-01 | 83.1% | 91.7% |
| 3283752 | 101.1.1.13 ↗ | alpha arrays › HTH › HTH › Three-helical HTH › HTH_Tnp_1 | 0.81 | 60.0 | 5.24e-01 | 83.1% | 53.7% |
| 3221523 | 101.1.1.0 ↗ | alpha arrays › HTH › HTH › Three-helical HTH | 0.80 | 73.0 | 6.50e-01 | 100.0% | 95.6% |
| 4252938 | 101.1.1.46 ↗ | alpha arrays › HTH › HTH › Three-helical HTH › Myb_DNA-bind_2 | 0.80 | 69.0 | 6.91e-01 | 92.3% | 90.8% |
| 3485826 | 101.1.1.46 ↗ | alpha arrays › HTH › HTH › Three-helical HTH › Myb_DNA-bind_2 | 0.80 | 70.0 | 6.52e-01 | 95.4% | 78.8% |
| 3233735 | 101.1.1.264 ↗ | alpha arrays › HTH › HTH › Three-helical HTH › SPK | 0.80 | 70.0 | 6.48e-01 | 95.4% | 81.2% |
| 4468962 | 101.1.1.46 ↗ | alpha arrays › HTH › HTH › Three-helical HTH › Myb_DNA-bind_2 | 0.79 | 70.0 | 7.03e-01 | 95.4% | 95.4% |
| 3624377 | 101.1.1.0 ↗ | alpha arrays › HTH › HTH › Three-helical HTH | 0.78 | 68.0 | 6.32e-01 | 93.8% | 87.5% |
| 3581626 | 101.1.1.0 ↗ | alpha arrays › HTH › HTH › Three-helical HTH | 0.78 | 71.0 | 5.71e-01 | 100.0% | 95.8% |
| 3781118 | 101.1.1.46 ↗ | alpha arrays › HTH › HTH › Three-helical HTH › Myb_DNA-bind_2 | 0.78 | 69.0 | 6.09e-01 | 95.4% | 85.6% |
| 3829115 | 101.1.1.270 ↗ | alpha arrays › HTH › HTH › Three-helical HTH › A_thal_3526 | 0.78 | 57.0 | 5.71e-01 | 83.1% | 76.9% |
| 3220835 | 101.1.1.0 ↗ | alpha arrays › HTH › HTH › Three-helical HTH | 0.77 | 69.0 | 5.80e-01 | 100.0% | 96.4% |
| 3234666 | 101.1.2.577 ↗ | alpha arrays › HTH › HTH › winged helix domain › SPK | 0.76 | 69.0 | 5.59e-01 | 100.0% | 91.7% |
| 3394518 | 101.1.1.65 ↗ | alpha arrays › HTH › HTH › Three-helical HTH › Myb_DNA-bind_4 | 0.76 | 64.0 | 5.45e-01 | 90.8% | 80.0% |
| 3594352 | 101.1.1.0 ↗ | alpha arrays › HTH › HTH › Three-helical HTH | 0.75 | 69.0 | 6.53e-01 | 100.0% | 90.7% |
| 3270068 | 101.1.1.0 ↗ | alpha arrays › HTH › HTH › Three-helical HTH | 0.74 | 58.0 | 5.31e-01 | 89.2% | 64.7% |
| 3806070 | 101.1.17.0 ↗ | alpha arrays › HTH › HTH › FF domain | 0.74 | 53.0 | 5.81e-01 | 75.4% | 100.0% |
| 3277060 | 198.1.1.2 ↗ | alpha arrays › Saposin-like › Saposin-like › Saposin-like › SapB_2,SapB_1 | 0.72 | 58.0 | 5.58e-01 | 87.7% | 85.3% |
| 4501343 | 101.35.1.0 ↗ | alpha arrays › HTH › DNA repair regulatory protein RecX › DNA repair regulatory protein RecX | 0.72 | 54.0 | 5.82e-01 | 87.7% | 94.5% |
| 3499387 | 101.1.2.154 ↗ | alpha arrays › HTH › HTH › winged helix domain › CDT1_C | 0.72 | 62.0 | 5.21e-01 | 96.9% | 72.7% |
| 4988961 | 129.1.1.16 ↗ | alpha arrays › 6-phosphogluconate dehydrogenase C-terminal domain-like › 6-phosphogluconate dehydrogenase C-terminal domain-like › 6-phosphogluconate dehydrogenase C-terminal domain-like › NAD_binding_11 | 0.70 | 59.0 | 4.81e-01 | 93.8% | 88.7% |
| 3725789 | 101.1.1.0 ↗ | alpha arrays › HTH › HTH › Three-helical HTH | 0.70 | 57.0 | 5.78e-01 | 90.8% | 90.8% |
| 3668296 | 129.1.1.16 ↗ | alpha arrays › 6-phosphogluconate dehydrogenase C-terminal domain-like › 6-phosphogluconate dehydrogenase C-terminal domain-like › 6-phosphogluconate dehydrogenase C-terminal domain-like › NAD_binding_11 | 0.70 | 58.0 | 4.65e-01 | 93.8% | 82.2% |
| 3269159 | 101.1.1.89 ↗ | alpha arrays › HTH › HTH › Three-helical HTH › Myb_DNA-binding_7 | 0.70 | 52.0 | 5.46e-01 | 83.1% | 96.4% |
| 3727464 | 129.1.1.16 ↗ | alpha arrays › 6-phosphogluconate dehydrogenase C-terminal domain-like › 6-phosphogluconate dehydrogenase C-terminal domain-like › 6-phosphogluconate dehydrogenase C-terminal domain-like › NAD_binding_11 | 0.70 | 56.0 | 4.40e-01 | 89.2% | 83.6% |
| 3212897 | 198.1.1.1 ↗ | alpha arrays › Saposin-like › Saposin-like › Saposin-like › SapB_2 | 0.70 | 56.0 | 5.45e-01 | 93.8% | 80.0% |
| 3695796 | 129.1.1.16 ↗ | alpha arrays › 6-phosphogluconate dehydrogenase C-terminal domain-like › 6-phosphogluconate dehydrogenase C-terminal domain-like › 6-phosphogluconate dehydrogenase C-terminal domain-like › NAD_binding_11 | 0.69 | 56.0 | 4.38e-01 | 89.2% | 83.6% |
| 4164573 | 5060.2.1.1 ↗ | alpha bundles › V-type ATP synthase subunit C › Toxin coregulated pilus biosynthesis protein E cytoplasmic domain › Toxin coregulated pilus biosynthesis protein E cytoplasmic domain › T2SSF | 0.69 | 58.0 | 4.78e-01 | 92.3% | 79.1% |
| 5020941 | 5060.2.1.1 ↗ | alpha bundles › V-type ATP synthase subunit C › Toxin coregulated pilus biosynthesis protein E cytoplasmic domain › Toxin coregulated pilus biosynthesis protein E cytoplasmic domain › T2SSF | 0.69 | 58.0 | 4.59e-01 | 92.3% | 73.1% |
| 3803192 | 129.1.1.16 ↗ | alpha arrays › 6-phosphogluconate dehydrogenase C-terminal domain-like › 6-phosphogluconate dehydrogenase C-terminal domain-like › 6-phosphogluconate dehydrogenase C-terminal domain-like › NAD_binding_11 | 0.68 | 57.0 | 4.54e-01 | 95.4% | 83.0% |
| 3737238 | 192.17.1.0 ↗ | alpha bundles › Long alpha-hairpin › Rabenosyn-5 Rab-binding domain-like › Rabenosyn-5 Rab-binding domain-like | 0.67 | 46.0 | 4.29e-01 | 80.0% | 57.5% |
| 5025416 | 2004.1.1.0 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases | 0.67 | 55.0 | 3.96e-01 | 93.8% | 83.5% |
| 5069812 | 2004.1.1.22 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Sigma54_activat | 0.67 | 47.0 | 3.16e-01 | 73.8% | 20.6% |
| 3284363 | 129.1.1.16 ↗ | alpha arrays › 6-phosphogluconate dehydrogenase C-terminal domain-like › 6-phosphogluconate dehydrogenase C-terminal domain-like › 6-phosphogluconate dehydrogenase C-terminal domain-like › NAD_binding_11 | 0.67 | 54.0 | 4.50e-01 | 92.3% | 91.7% |
| 4596379 | 7000.1.1.0 ↗ | alpha arrays › inserted region in the C-terminal domain of the archeal LeuRS › inserted region in the C-terminal domain of the archeal LeuRS › inserted region in the C-terminal domain of the archeal LeuRS | 0.66 | 55.0 | 5.41e-01 | 93.8% | 91.4% |
| 3181267 | 101.1.1.0 ↗ | alpha arrays › HTH › HTH › Three-helical HTH | 0.66 | 48.0 | 5.12e-01 | 87.7% | 92.7% |
| 3696888 | 129.1.1.16 ↗ | alpha arrays › 6-phosphogluconate dehydrogenase C-terminal domain-like › 6-phosphogluconate dehydrogenase C-terminal domain-like › 6-phosphogluconate dehydrogenase C-terminal domain-like › NAD_binding_11 | 0.66 | 58.0 | 4.53e-01 | 98.5% | 88.6% |
| 1901143 | 129.1.1.16 ↗ | alpha arrays › 6-phosphogluconate dehydrogenase C-terminal domain-like › 6-phosphogluconate dehydrogenase C-terminal domain-like › 6-phosphogluconate dehydrogenase C-terminal domain-like › NAD_binding_11 | 0.66 | 56.0 | 4.45e-01 | 95.4% | 88.1% |
| 3190506 | 101.1.1.0 ↗ | alpha arrays › HTH › HTH › Three-helical HTH | 0.65 | 57.0 | 5.35e-01 | 98.5% | 92.5% |
| 3702178 | 129.1.1.16 ↗ | alpha arrays › 6-phosphogluconate dehydrogenase C-terminal domain-like › 6-phosphogluconate dehydrogenase C-terminal domain-like › 6-phosphogluconate dehydrogenase C-terminal domain-like › NAD_binding_11 | 0.65 | 54.0 | 4.45e-01 | 95.4% | 89.6% |
| 5032990 | 7000.1.1.0 ↗ | alpha arrays › inserted region in the C-terminal domain of the archeal LeuRS › inserted region in the C-terminal domain of the archeal LeuRS › inserted region in the C-terminal domain of the archeal LeuRS | 0.63 | 52.0 | 5.17e-01 | 96.9% | 90.0% |
| 1903656 | 129.1.1.16 ↗ | alpha arrays › 6-phosphogluconate dehydrogenase C-terminal domain-like › 6-phosphogluconate dehydrogenase C-terminal domain-like › 6-phosphogluconate dehydrogenase C-terminal domain-like › NAD_binding_11 | 0.62 | 50.0 | 4.17e-01 | 93.8% | 87.2% |
| 4299521 | 195.1.1.1 ↗ | alpha complex topology › NusB-like › NusB-like › NusB-like › NusB | 0.62 | 54.0 | 4.19e-01 | 100.0% | 45.3% |
| 4933724 | 604.39.1.16 ↗ | alpha bundles › Spectrin repeat-like › S-component of energy-coupling factor (ECF) transporters › S-component of energy-coupling factor (ECF) transporters › ThiW | 0.62 | 53.0 | 3.88e-01 | 100.0% | 85.8% |
| 5029280 | 2008.1.1.59 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › PDDEXK_1 | 0.61 | 40.0 | 2.84e-01 | 76.9% | 21.5% |
| 4322661 | 129.1.1.4 ↗ | alpha arrays › 6-phosphogluconate dehydrogenase C-terminal domain-like › 6-phosphogluconate dehydrogenase C-terminal domain-like › 6-phosphogluconate dehydrogenase C-terminal domain-like › IlvC | 0.60 | 44.0 | 3.26e-01 | 78.5% | 73.8% |
| 5078113 | 195.1.1.0 ↗ | alpha complex topology › NusB-like › NusB-like › NusB-like | 0.60 | 51.0 | 4.16e-01 | 100.0% | 52.3% |
| 5045839 | 195.1.1.1 ↗ | alpha complex topology › NusB-like › NusB-like › NusB-like › NusB | 0.58 | 49.0 | 4.14e-01 | 100.0% | 56.7% |
| 4979418 | 5060.2.1.0 ↗ | alpha bundles › V-type ATP synthase subunit C › Toxin coregulated pilus biosynthesis protein E cytoplasmic domain › Toxin coregulated pilus biosynthesis protein E cytoplasmic domain | 0.56 | 46.0 | 3.94e-01 | 96.9% | 87.0% |
| 3478509 | 632.2.1.0 ↗ | alpha bundles › immunoglobulin/albumin-binding domain-like › Bacterial immunoglobulin/albumin-binding domains › Bacterial immunoglobulin/albumin-binding domains | 0.51 | 36.0 | 3.49e-01 | 76.9% | 82.1% |
D2
medium
residues 85-154
Domain cluster:
representative