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EF583821.1__ABS83667.1__0305phi8-36p109__00009
Bact-VirEF583821.1__ABS83667.1__0305phi8-36p109__00009
Identity
- Accession:
- EF583821 ↗
- Kingdom:
- phage
Quality
93.6
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 4-86
Domain cluster:
representative
CATH (22)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2zyzC00 | 3.40.1350.10 | Alpha Beta › 3-Layer(aba) Sandwich › Trna Endonuclease; Chain: A, domain 1 › | 0.62 | 35.0 | 3.38e-01 | 78.3% | 49.0% |
| 1vq8T00 | 2.30.30.30 | Mainly Beta › Roll › SH3 type barrels. › | 0.60 | 39.0 | 3.48e-01 | 79.5% | 46.2% |
| 2odkA00 | 3.40.1620.10 | Alpha Beta › 3-Layer(aba) Sandwich › YefM-like fold › YefM-like domain | 0.58 | 33.0 | 3.99e-01 | 97.6% | 92.0% |
| 1jeyA02 | 2.40.290.10 | Mainly Beta › Beta Barrel › Ku70; Chain: A; Domain 2 › | 0.58 | 46.0 | 4.06e-01 | 88.0% | 96.8% |
| 3jtfA01 | 3.90.1280.20 | Alpha Beta › Alpha-Beta Complex › CBS domain Like › | 0.58 | 34.0 | 3.81e-01 | 84.3% | 78.7% |
| 2dbsA00 | 3.40.1350.20 | Alpha Beta › 3-Layer(aba) Sandwich › Trna Endonuclease; Chain: A, domain 1 › | 0.55 | 36.0 | 3.64e-01 | 85.5% | 67.5% |
| 2j9lF01 | 3.90.1280.20 | Alpha Beta › Alpha-Beta Complex › CBS domain Like › | 0.55 | 34.0 | 3.60e-01 | 86.7% | 69.9% |
| 2gksB01 | 3.10.400.10 | Alpha Beta › Roll › Sulfate adenylyltransferase › Sulfate adenylyltransferase | 0.54 | 50.0 | 4.17e-01 | 100.0% | 90.8% |
| 3kyfA02 | 2.40.10.220 | Mainly Beta › Beta Barrel › Thrombin, subunit H › predicted glycosyltransferase like domains | 0.54 | 43.0 | 3.90e-01 | 89.2% | 73.5% |
| 1x6vA02 | 3.10.400.10 | Alpha Beta › Roll › Sulfate adenylyltransferase › Sulfate adenylyltransferase | 0.53 | 48.0 | 3.87e-01 | 100.0% | 81.6% |
| 2qkxA01 | 3.90.550.10 | Alpha Beta › Alpha-Beta Complex › Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A › Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A | 0.52 | 44.0 | 3.30e-01 | 100.0% | 92.0% |
| 1v47A01 | 3.10.400.10 | Alpha Beta › Roll › Sulfate adenylyltransferase › Sulfate adenylyltransferase | 0.52 | 47.0 | 4.01e-01 | 100.0% | 94.0% |
| 2gjwC01 | 3.40.1350.150 | Alpha Beta › 3-Layer(aba) Sandwich › Trna Endonuclease; Chain: A, domain 1 › | 0.52 | 29.0 | 2.52e-01 | 78.3% | 30.7% |
| 3pieC05 | 2.170.260.40 | Mainly Beta › Beta Complex › paz domain › | 0.51 | 44.0 | 3.55e-01 | 96.4% | 97.0% |
| 8a8gA01 | 3.10.400.10 | Alpha Beta › Roll › Sulfate adenylyltransferase › Sulfate adenylyltransferase | 0.51 | 47.0 | 3.92e-01 | 100.0% | 89.3% |
| 2zxqA01 | 2.70.98.10 | Mainly Beta › Distorted Sandwich › Beta-galactosidase; Chain A, domain 5 › | 0.51 | 40.0 | 2.92e-01 | 90.4% | 80.6% |
| 7oc3A01 | 2.30.30.140 | Mainly Beta › Roll › SH3 type barrels. › | 0.51 | 34.0 | 3.32e-01 | 79.5% | 60.9% |
| 1ajaB00 | 3.40.720.10 | Alpha Beta › 3-Layer(aba) Sandwich › Alkaline Phosphatase, subunit A › Alkaline Phosphatase, subunit A | 0.51 | 34.0 | 2.25e-01 | 71.1% | 84.6% |
| 2pfiB01 | 3.10.580.10 | Alpha Beta › Roll › CBS-domain › CBS-domain | 0.50 | 39.0 | 3.40e-01 | 100.0% | 52.2% |
| 2dp9A01 | 2.30.130.30 | Mainly Beta › Roll › Archaeosine Trna-guanine Transglycosylase; Chain: A, domain 4 › Hypothetical protein. | 0.50 | 45.0 | 4.27e-01 | 100.0% | 91.0% |
| 5dm6S01 | 2.40.240.10 | Mainly Beta › Beta Barrel › Ribosomal Protein L25; Chain P › Ribosomal Protein L25; Chain P | 0.50 | 43.0 | 4.31e-01 | 97.6% | 100.0% |
| 1feuA01 | 2.40.240.10 | Mainly Beta › Beta Barrel › Ribosomal Protein L25; Chain P › Ribosomal Protein L25; Chain P | 0.50 | 44.0 | 4.29e-01 | 100.0% | 97.8% |
ECOD (42)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4113552 | 2484.1.1.0 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like | 0.66 | 40.0 | 4.10e-01 | 71.1% | 62.5% |
| 4169084 | 4267.1.1.1 ↗ | a+b duplicates or obligate multimers › YefM-like › YefM-like › YefM-like › PhdYeFM_antitox | 0.64 | 33.0 | 3.51e-01 | 74.7% | 55.7% |
| 5042797 | 1.1.8.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › Aminomethyltransferase beta-barrel domain | 0.63 | 36.0 | 4.14e-01 | 83.1% | 76.7% |
| 3497989 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.61 | 34.0 | 3.92e-01 | 79.5% | 76.7% |
| 4258656 | 1.1.9.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › PUA domain | 0.60 | 46.0 | 4.89e-01 | 100.0% | 91.9% |
| 4262578 | 1.1.9.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › PUA domain | 0.60 | 42.0 | 4.59e-01 | 100.0% | 92.3% |
| 4178357 | 1.1.9.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › PUA domain | 0.60 | 41.0 | 4.59e-01 | 100.0% | 92.3% |
| 4941513 | 11.1.5.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Common fold of diphtheria toxin/transcription factors/cytochrome f | 0.59 | 53.0 | 4.83e-01 | 98.8% | 93.6% |
| 4961856 | 1.1.9.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › PUA domain | 0.59 | 48.0 | 4.05e-01 | 100.0% | 52.9% |
| 5067189 | 1.1.9.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › PUA domain | 0.59 | 53.0 | 4.15e-01 | 100.0% | 54.9% |
| 5062788 | 1.1.9.1 ↗ | beta barrels › cradle loop barrel › RIFT-related › PUA domain › PUA | 0.58 | 44.0 | 4.23e-01 | 100.0% | 69.5% |
| 4958443 | 1.1.9.50 ↗ | beta barrels › cradle loop barrel › RIFT-related › PUA domain › PF28530 | 0.58 | 53.0 | 4.10e-01 | 100.0% | 47.4% |
| 3576524 | 311.1.1.2 ↗ | a+b three layers › Phoshotransferase/anion transport protein › Phoshotransferase/anion transport protein › Phoshotransferase/anion transport protein › Band_3_cyto | 0.58 | 52.0 | 4.12e-01 | 100.0% | 91.2% |
| 4504459 | 1.1.9.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › PUA domain | 0.58 | 44.0 | 4.63e-01 | 100.0% | 90.7% |
| 4525510 | 311.1.1.2 ↗ | a+b three layers › Phoshotransferase/anion transport protein › Phoshotransferase/anion transport protein › Phoshotransferase/anion transport protein › Band_3_cyto | 0.57 | 51.0 | 3.57e-01 | 100.0% | 61.8% |
| 4051888 | 1.1.9.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › PUA domain | 0.56 | 43.0 | 4.51e-01 | 100.0% | 91.9% |
| 4049740 | 1.1.9.20 ↗ | beta barrels › cradle loop barrel › RIFT-related › PUA domain › PUA_4 | 0.55 | 42.0 | 4.41e-01 | 100.0% | 90.7% |
| 4354776 | 1.1.9.16 ↗ | beta barrels › cradle loop barrel › RIFT-related › PUA domain › PUA_2 | 0.54 | 49.0 | 3.75e-01 | 100.0% | 81.1% |
| 4958010 | 1.1.9.1 ↗ | beta barrels › cradle loop barrel › RIFT-related › PUA domain › PUA | 0.54 | 43.0 | 4.55e-01 | 100.0% | 96.0% |
| 5042221 | 1.1.9.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › PUA domain | 0.53 | 48.0 | 4.47e-01 | 100.0% | 97.1% |
| 4946513 | 1.1.9.55 ↗ | beta barrels › cradle loop barrel › RIFT-related › PUA domain › ATP-sulfurylase | 0.53 | 48.0 | 3.86e-01 | 100.0% | 80.0% |
| 3387963 | 1.1.9.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › PUA domain | 0.52 | 46.0 | 4.07e-01 | 100.0% | 96.8% |
| 3607539 | 7502.1.1.2 ↗ | a/b three-layered sandwiches › Anticodon-binding domain of Class II aaRS › Anticodon-binding domain of Class II aaRS › Anticodon-binding domain of Class II aaRS › Brix | 0.52 | 43.0 | 3.21e-01 | 92.8% | 82.2% |
| 4196299 | 1.1.9.1 ↗ | beta barrels › cradle loop barrel › RIFT-related › PUA domain › PUA | 0.52 | 47.0 | 4.37e-01 | 100.0% | 83.8% |
| 3743613 | 1.1.9.1 ↗ | beta barrels › cradle loop barrel › RIFT-related › PUA domain › PUA | 0.52 | 47.0 | 4.35e-01 | 100.0% | 85.7% |
| 5079294 | 1.1.9.16 ↗ | beta barrels › cradle loop barrel › RIFT-related › PUA domain › PUA_2 | 0.52 | 47.0 | 3.78e-01 | 100.0% | 80.0% |
| 172 | 1.1.9.16 ↗ | beta barrels › cradle loop barrel › RIFT-related › PUA domain › PUA_2 | 0.52 | 47.0 | 4.02e-01 | 100.0% | 94.7% |
| 4972120 | 1.1.9.35 ↗ | beta barrels › cradle loop barrel › RIFT-related › PUA domain › PF30643 | 0.52 | 47.0 | 4.27e-01 | 100.0% | 92.7% |
| 3669546 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.52 | 35.0 | 4.10e-01 | 80.7% | 98.3% |
| 4121844 | 1.1.9.16 ↗ | beta barrels › cradle loop barrel › RIFT-related › PUA domain › PUA_2 | 0.52 | 47.0 | 3.64e-01 | 100.0% | 72.6% |
| 3477241 | 7502.1.1.2 ↗ | a/b three-layered sandwiches › Anticodon-binding domain of Class II aaRS › Anticodon-binding domain of Class II aaRS › Anticodon-binding domain of Class II aaRS › Brix | 0.52 | 42.0 | 3.11e-01 | 92.8% | 86.9% |
| 5077279 | 1.1.9.35 ↗ | beta barrels › cradle loop barrel › RIFT-related › PUA domain › PF30643 | 0.52 | 47.0 | 4.13e-01 | 100.0% | 84.2% |
| 3470385 | 7502.1.1.0 ↗ | a/b three-layered sandwiches › Anticodon-binding domain of Class II aaRS › Anticodon-binding domain of Class II aaRS › Anticodon-binding domain of Class II aaRS | 0.51 | 41.0 | 3.17e-01 | 91.6% | 86.0% |
| 4668753 | 239.1.1.3 ↗ | beta barrels › Ribosomal protein L25-like › Ribosomal protein L25-like › Ribosomal protein L25-like › Ribosomal_L25p | 0.51 | 45.0 | 4.31e-01 | 100.0% | 96.0% |
| 5017293 | 7502.1.1.0 ↗ | a/b three-layered sandwiches › Anticodon-binding domain of Class II aaRS › Anticodon-binding domain of Class II aaRS › Anticodon-binding domain of Class II aaRS | 0.51 | 39.0 | 3.18e-01 | 81.9% | 97.0% |
| 3253514 | 239.1.1.3 ↗ | beta barrels › Ribosomal protein L25-like › Ribosomal protein L25-like › Ribosomal protein L25-like › Ribosomal_L25p | 0.51 | 45.0 | 4.28e-01 | 100.0% | 96.0% |
| 4089484 | 1.1.9.16 ↗ | beta barrels › cradle loop barrel › RIFT-related › PUA domain › PUA_2 | 0.51 | 46.0 | 3.69e-01 | 100.0% | 78.1% |
| 4681723 | 239.1.1.3 ↗ | beta barrels › Ribosomal protein L25-like › Ribosomal protein L25-like › Ribosomal protein L25-like › Ribosomal_L25p | 0.51 | 45.0 | 4.34e-01 | 100.0% | 96.8% |
| 4231034 | 239.1.1.3 ↗ | beta barrels › Ribosomal protein L25-like › Ribosomal protein L25-like › Ribosomal protein L25-like › Ribosomal_L25p | 0.51 | 45.0 | 4.23e-01 | 100.0% | 93.0% |
| 4493865 | 239.1.1.3 ↗ | beta barrels › Ribosomal protein L25-like › Ribosomal protein L25-like › Ribosomal protein L25-like › Ribosomal_L25p | 0.51 | 45.0 | 4.23e-01 | 100.0% | 97.0% |
| 1879702 | 239.1.1.3 ↗ | beta barrels › Ribosomal protein L25-like › Ribosomal protein L25-like › Ribosomal protein L25-like › Ribosomal_L25p | 0.51 | 45.0 | 4.32e-01 | 100.0% | 95.7% |
| 3740923 | 4.1.1.107 ↗ | beta barrels › SH3 › SH3 › SH3 › XRN1_D1 | 0.50 | 42.0 | 3.37e-01 | 96.4% | 90.0% |