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EF602154.1__ABR10548.1__BcepNY3gene13__00014

Bact-Vir

EF602154.1__ABR10548.1__BcepNY3gene13__00014

Identity

Accession:
EF602154 ↗
Kingdom:
phage

Quality

65.7 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Naesvirus› Burkholderia_phage_BcepNY3

TaxID: 2881397

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 153-231
PDB
Domain cluster: rep: LC644971.1__BCZ75766.1__X__00011__D308-377
CATH (21)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3pjaJ01 1.20.58.190 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Translin; domain 1 0.72 55.0 4.59e-01 81.0% 87.0%
1fafA00 1.10.287.110 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › DnaJ domain 0.69 31.0 3.20e-01 91.1% 41.8%
3icxA01 1.10.287.660 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Helix hairpin bin 0.68 41.0 4.20e-01 82.3% 62.7%
4gx0A01 1.10.287.70 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › 0.61 50.0 4.52e-01 87.3% 67.0%
3tjmA02 1.10.1470.20 Mainly Alpha › Orthogonal Bundle › Protein Yjbj; Chain: A; › Fatty acid synthase; domain 2 0.60 42.0 4.07e-01 73.4% 72.2%
1x8zB00 1.20.140.40 Mainly Alpha › Up-down Bundle › Butyryl-CoA Dehydrogenase, subunit A; domain 3 › Invertase/pectin methylesterase inhibitor family protein 0.59 46.0 3.73e-01 83.5% 71.4%
4txiA03 1.10.418.10 Mainly Alpha › Orthogonal Bundle › Actin-binding Protein, T-fimbrin; domain 1 › Calponin-like domain 0.58 43.0 4.03e-01 81.0% 73.8%
3um7A03 1.10.287.70 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › 0.58 43.0 4.04e-01 100.0% 62.1%
2no4A02 1.10.150.240 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Putative phosphatase; domain 2 0.58 33.0 3.46e-01 78.5% 58.7%
2w96A02 1.10.472.10 Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › Cyclin-like 0.58 40.0 3.58e-01 72.2% 85.0%
4dxwA02 1.10.287.70 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › 0.57 44.0 4.00e-01 93.7% 59.8%
3u9jA00 1.20.120.520 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › nmb1532 protein domain like 0.55 49.0 3.88e-01 97.5% 67.5%
1m5iA00 1.10.287.450 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Helix hairpin bin 0.55 41.0 3.72e-01 78.5% 61.0%
2ajrA01 3.40.1190.20 Alpha Beta › 3-Layer(aba) Sandwich › UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase › Ribokinase 0.55 39.0 2.81e-01 77.2% 95.1%
2oduA02 1.20.58.60 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.55 49.0 4.44e-01 97.5% 100.0%
7uuim02 1.10.1580.10 Mainly Alpha › Orthogonal Bundle › Conserved Hypothetical Protein Ylqf; Chain: A; domain 2 › 0.54 37.0 3.70e-01 70.9% 69.1%
2vk1A01 3.40.50.970 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Thiamin diphosphate (ThDP)-binding fold, Pyr/PP domains 0.51 39.0 3.01e-01 82.3% 85.0%
4mk3A02 1.20.1050.10 Mainly Alpha › Up-down Bundle › Glutathione S-transferase Yfyf (Class Pi); Chain A, domain 2 › 0.51 36.0 3.27e-01 74.7% 92.2%
2ib0A01 1.20.1260.10 Mainly Alpha › Up-down Bundle › Ferritin › Ferritin, core subunit, four-helix bundle 0.51 44.0 3.67e-01 93.7% 100.0%
7tj9A01 1.20.120.350 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Voltage-gated potassium channels. Chain C 0.51 40.0 3.63e-01 84.8% 76.4%
3f4mA00 1.20.1440.160 Mainly Alpha › Up-down Bundle › de novo design (two linked rop proteins) › Tumor necrosis factor alpha-induced protein 8-like 0.51 36.0 2.90e-01 75.9% 50.6%
ECOD (14)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3942669 105.1.1.0 ↗ alpha duplicates or obligate multimers › HLH-like › HLH, helix-loop-helix DNA-binding domain › HLH, helix-loop-helix DNA-binding domain 0.82 71.0 7.31e-01 96.2% 100.0%
3731997 3831.1.1.0 ↗ alpha bundles › Secreted protein of unknown function DUF1311 › Secreted protein of unknown function DUF1311 › Secreted protein of unknown function DUF1311 0.71 54.0 4.63e-01 81.0% 62.4%
4989888 601.7.1.2 ↗ alpha bundles › Four-helical up-and-down bundle › HEPN › Nucleotidyltransferase substrate binding subunit/domain › HEPN 0.69 53.0 4.65e-01 83.5% 82.5%
3902519 109.4.1.1385 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › TPR_IF140_C, TPR_IF140-IFT172 0.67 48.0 2.89e-01 74.7% 17.7%
4971358 601.7.1.2 ↗ alpha bundles › Four-helical up-and-down bundle › HEPN › Nucleotidyltransferase substrate binding subunit/domain › HEPN 0.65 49.0 4.35e-01 84.8% 82.4%
3820045 603.1.1.118 ↗ alpha bundles › STAT-like › t-snare proteins › t-snare proteins › DUF7610 0.62 34.0 3.40e-01 77.2% 50.6%
3757710 109.4.1.632 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › MMS22L_C 0.62 48.0 3.34e-01 83.5% 44.3%
4992012 101.1.1.0 ↗ alpha arrays › HTH › HTH › Three-helical HTH 0.60 31.0 3.56e-01 72.2% 66.7%
3936005 604.12.1.2 ↗ alpha bundles › Spectrin repeat-like › MIT domain › MIT domain › Vta1 0.60 47.0 4.28e-01 84.8% 100.0%
3688470 2003.1.5.3 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › Methyltransf_2 0.56 39.0 2.64e-01 81.0% 19.0%
3168872 192.15.1.1 ↗ alpha bundles › Long alpha-hairpin › Endosomal sorting complex assembly domains › Endosomal sorting complex assembly domains › VPS28 0.56 44.0 3.97e-01 82.3% 85.7%
3382589 633.16.1.0 ↗ alpha bundles › Bromodomain-like › PMT helical bundle domain-like › PMT helical bundle domain-like 0.54 50.0 4.13e-01 100.0% 60.7%
3417343 109.4.1.1718 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PF26716 0.54 47.0 4.04e-01 96.2% 67.2%
4577904 604.12.1.0 ↗ alpha bundles › Spectrin repeat-like › MIT domain › MIT domain 0.52 39.0 3.98e-01 79.7% 85.0%