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EF694695.1__ABU53887.1__X__00005
Bact-VirEF694695.1__ABU53887.1__X__00005
Identity
- Accession:
- EF694695 ↗
- Kingdom:
- phage
Quality
89.1
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 6-60
Domain cluster:
representative
CATH (17)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2ltuA00 | 1.10.8.10 | Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Ubiquitin-associated (UBA) domain | 0.72 | 53.0 | 5.11e-01 | 78.2% | 79.0% |
| 4cs9B02 | 1.20.120.1350 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Pneumovirus matrix protein 2 (M2), zinc-binding domain | 0.72 | 55.0 | 4.43e-01 | 83.6% | 97.2% |
| 2cwoA02 | 1.10.1200.170 | Mainly Alpha › Orthogonal Bundle › Non-ribosomal Peptide Synthetase Peptidyl Carrier Protein; Chain A › RNA silencing suppressor P21, C-terminal domain | 0.68 | 56.0 | 4.86e-01 | 94.5% | 59.0% |
| 2m35A00 | 1.10.60.50 | Mainly Alpha › Orthogonal Bundle › Diphtheria Toxin Repressor; domain 2 › | 0.67 | 47.0 | 4.83e-01 | 74.5% | 78.8% |
| 6qpqB00 | 1.10.10.580 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Structural maintenance of chromosome 1. Chain E | 0.62 | 47.0 | 4.19e-01 | 100.0% | 56.8% |
| 1u5kA02 | 1.20.1440.120 | Mainly Alpha › Up-down Bundle › de novo design (two linked rop proteins) › Recombination protein O, C-terminal domain | 0.61 | 51.0 | 4.07e-01 | 100.0% | 71.2% |
| 1nv8B01 | 1.10.8.10 | Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Ubiquitin-associated (UBA) domain | 0.61 | 44.0 | 4.07e-01 | 78.2% | 59.2% |
| 2ze7A02 | 1.10.287.890 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Crystal structure of tRNA isopentenylpyrophosphate transferase (bh2366) domain | 0.61 | 45.0 | 3.76e-01 | 81.8% | 46.1% |
| 3w0lD01 | 1.10.8.1080 | Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › | 0.58 | 45.0 | 3.78e-01 | 87.3% | 61.4% |
| 4is7A01 | 1.10.150.50 | Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Transcription Factor, Ets-1 | 0.56 | 40.0 | 3.86e-01 | 81.8% | 69.1% |
| 2ds2D01 | 1.10.110.10 | Mainly Alpha › Orthogonal Bundle › Hydrophobic Seed Protein › Plant lipid-transfer and hydrophobic proteins | 0.55 | 38.0 | 3.78e-01 | 100.0% | 70.2% |
| 1pwkA00 | 3.30.740.10 | Alpha Beta › 2-Layer Sandwich › Protein Inhibitor Of Neuronal Nitric Oxide Synthase › Protein Inhibitor Of Neuronal Nitric Oxide Synthase; | 0.55 | 50.0 | 4.18e-01 | 100.0% | 72.5% |
| 4bxoA02 | 1.10.150.20 | Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › 5' to 3' exonuclease, C-terminal subdomain | 0.55 | 40.0 | 3.85e-01 | 81.8% | 67.2% |
| 4bfmA00 | 1.10.510.10 | Mainly Alpha › Orthogonal Bundle › Transferase(Phosphotransferase); domain 1 › Transferase(Phosphotransferase) domain 1 | 0.54 | 47.0 | 2.92e-01 | 98.2% | 31.0% |
| 2hujA00 | 1.20.120.440 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › YppE-like | 0.54 | 46.0 | 3.59e-01 | 100.0% | 84.0% |
| 3pieC01 | 3.40.50.12390 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › | 0.52 | 47.0 | 2.98e-01 | 100.0% | 28.9% |
| 2dbbB01 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.52 | 38.0 | 3.86e-01 | 96.4% | 78.2% |
ECOD (14)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3347020 | 103.1.1.0 ↗ | alpha arrays › RuvA-C › RuvA-C, UBA, CRAL/TRIO-N, HBS1 › UBA-like domain | 0.84 | 60.0 | 6.10e-01 | 76.4% | 83.6% |
| 4974091 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.75 | 50.0 | 4.61e-01 | 78.2% | 54.3% |
| 4949593 | 3718.1.1.0 ↗ | alpha bundles › Flagellar protein fliT › Flagellar protein fliT › Flagellar protein fliT | 0.73 | 48.0 | 3.99e-01 | 100.0% | 40.0% |
| 3652660 | 210.2.1.1 ↗ | a+b four layers › Ntn/PP2C › Protein serine/threonine phosphatase 2C, catalytic domain › Protein serine/threonine phosphatase 2C, catalytic domain › PP2C | 0.66 | 48.0 | 3.17e-01 | 80.0% | 22.4% |
| 4449691 | 101.1.6.4 ↗ | alpha arrays › HTH › HTH › TrpR › Bac_DnaA_C | 0.59 | 45.0 | 4.36e-01 | 81.8% | 71.4% |
| 3993539 | 3104.1.1.1 ↗ | alpha bundles › Putative ubiquinone biosynthesis protein › Putative ubiquinone biosynthesis protein › Putative ubiquinone biosynthesis protein › Coq4 | 0.59 | 47.0 | 3.60e-01 | 92.7% | 52.4% |
| 4315800 | 2004.1.1.72 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › IPT | 0.59 | 44.0 | 3.00e-01 | 83.6% | 20.4% |
| 3704441 | 102.1.1.0 ↗ | alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › SAM domain-like | 0.58 | 40.0 | 3.82e-01 | 74.5% | 62.9% |
| 4640051 | 4070.1.1.0 ↗ | alpha arrays › FtsH protease domain-like › FtsH protease domain-like › FtsH protease domain-like | 0.57 | 49.0 | 3.38e-01 | 100.0% | 27.9% |
| 3357144 | 143.1.1.4 ↗ | alpha arrays › PABP domain-like › PABC(PABP) domain › PABC(PABP) domain › At2g29880_C | 0.56 | 39.0 | 3.89e-01 | 78.2% | 70.0% |
| 3517004 | 102.1.1.1 ↗ | alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › SAM domain-like › SAM_1 | 0.54 | 38.0 | 3.73e-01 | 80.0% | 67.7% |
| 3559333 | 102.1.1.34 ↗ | alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › SAM domain-like › SAM_4 | 0.53 | 39.0 | 3.48e-01 | 81.8% | 64.7% |
| 3400463 | 101.1.1.0 ↗ | alpha arrays › HTH › HTH › Three-helical HTH | 0.53 | 44.0 | 3.77e-01 | 96.4% | 55.8% |
| 4157292 | 3317.1.1.2 ↗ | alpha arrays › KorB C-terminal domain-like › KorB C-terminal domain › KorB C-terminal domain › HTH_ParB | 0.52 | 36.0 | 3.56e-01 | 74.5% | 100.0% |