←Back to structures

EFP

Euk-Vir

Plodia_interpunctella_granulovirus

EFP__YP_009330159__Plodia_interpunctella_granulovirus__262175

Identity

Accession:: YP_009330159 ↗
Protein ID:: EFP
Kingdom:: euk

Quality

71.7 mean pLDDT

Taxonomy

Naldaviricetes› Lefavirales› Baculoviridae› Betabaculovirus› Plodia_interpunctella_granulovirus

TaxID: 262175

Cluster

View cluster (44 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 85-98_470-549

PDB

Domain cluster: rep: budded_virus_envelope_fusion_protein_EFP__YP_003429350__Artogeia_rapae_granulovirus__362830__D7-23_393-489

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF12259.14 best	Baculo_F	78.7	5.60e-22	98.9%	14.0%

D2 medium residues 99-117_215-240_294-369

PDB

Domain cluster: rep: efp__YP_009121808__Spodoptera_frugiperda_granulovirus__307454__D173-206_260-322

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF12259.14 best	Baculo_F	96.0	3.20e-27	64.5%	12.2%

D3 medium residues 118-140_156-184_241-293

PDB

Domain cluster: representative

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF12259.14 best	Baculo_F	43.0	3.60e-11	56.2%	9.7%

CATH (37)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
4akvA02	1.20.1270.60	Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › Arfaptin homology (AH) domain/BAR domain	0.79	43.0	3.48e-01	100.0%	30.0%
2lm9A00	1.20.58.970	Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 ›	0.74	43.0	4.54e-01	100.0%	63.5%
4mh6A00	1.10.287.1700	Mainly Alpha › Orthogonal Bundle › Helix Hairpins ›	0.74	40.0	3.42e-01	100.0%	34.6%
1t72A02	1.20.58.220	Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Phosphate transport system protein phou homolog 2; domain 2	0.72	41.0	4.31e-01	100.0%	61.2%
3pe0A02	1.20.58.60	Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 ›	0.70	40.0	4.06e-01	100.0%	56.6%
3edvB01	1.20.58.60	Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 ›	0.69	43.0	3.91e-01	100.0%	48.5%
1cnt200	1.20.1250.10	Mainly Alpha › Up-down Bundle › Growth Hormone; Chain: A; ›	0.68	54.0	5.02e-01	100.0%	68.5%
1yg2A02	6.10.140.190	Special › Helix non-globular › Helix Hairpins ›	0.67	43.0	4.60e-01	100.0%	75.6%
3axjB02	1.20.58.200	Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Translin; domain 2	0.67	38.0	4.16e-01	98.1%	68.2%
3hr0B01	1.10.287.1060	Mainly Alpha › Orthogonal Bundle › Helix Hairpins › ESAT-6-like	0.66	44.0	5.11e-01	100.0%	91.1%
1kmiZ02	1.10.287.500	Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Helix hairpin bin	0.66	42.0	3.86e-01	100.0%	50.7%
1ku9A02	1.10.287.450	Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Helix hairpin bin	0.66	37.0	4.56e-01	100.0%	90.6%
1u5pA01	1.20.58.60	Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 ›	0.64	41.0	4.08e-01	100.0%	63.0%
2q12A00	1.20.1270.60	Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › Arfaptin homology (AH) domain/BAR domain	0.63	45.0	3.39e-01	72.4%	71.5%
4oe8C00	1.10.8.1170	Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 ›	0.63	48.0	5.30e-01	78.1%	96.6%
3icxA01	1.10.287.660	Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Helix hairpin bin	0.62	41.0	4.75e-01	100.0%	93.3%
4jioA01	1.20.120.560	Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › alix/aip1 in complex with the ypdl late domain	0.62	48.0	4.11e-01	81.0%	84.5%
4dylA02	1.10.287.160	Mainly Alpha › Orthogonal Bundle › Helix Hairpins › HR1 repeat	0.61	38.0	4.06e-01	100.0%	70.2%
1t72A01	1.20.58.220	Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Phosphate transport system protein phou homolog 2; domain 2	0.60	40.0	3.91e-01	100.0%	62.4%
1rj1A00	1.20.140.40	Mainly Alpha › Up-down Bundle › Butyryl-CoA Dehydrogenase, subunit A; domain 3 › Invertase/pectin methylesterase inhibitor family protein	0.59	55.0	4.84e-01	100.0%	70.9%
1yozA00	1.10.3200.10	Mainly Alpha › Orthogonal Bundle › Hypothetical protein af0941 › AF0941-like	0.59	36.0	3.55e-01	100.0%	56.6%
1e1dA02	1.20.1270.20	Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 ›	0.59	42.0	4.60e-01	81.0%	91.7%
4fzsA00	1.20.1270.60	Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › Arfaptin homology (AH) domain/BAR domain	0.59	40.0	3.19e-01	100.0%	35.4%
3zdqA01	1.20.1560.10	Mainly Alpha › Up-down Bundle › ABC transporter transmembrane region fold › ABC transporter type 1, transmembrane domain	0.59	40.0	2.78e-01	100.0%	22.2%
3qweA00	1.20.1270.60	Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › Arfaptin homology (AH) domain/BAR domain	0.58	43.0	3.22e-01	78.1%	81.5%
1qdbA02	1.20.140.10	Mainly Alpha › Up-down Bundle › Butyryl-CoA Dehydrogenase, subunit A; domain 3 › Butyryl-CoA Dehydrogenase, subunit A, domain 3	0.57	43.0	3.94e-01	80.0%	64.3%
1nafA02	1.20.58.160	Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 ›	0.57	43.0	4.74e-01	78.1%	96.5%
1s35A02	1.20.58.60	Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 ›	0.57	44.0	4.33e-01	80.0%	90.9%
3a7mA01	1.20.58.380	Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Flagellar protein flit.	0.56	41.0	4.10e-01	78.1%	73.6%
2rldA00	1.20.1440.60	Mainly Alpha › Up-down Bundle › de novo design (two linked rop proteins) › 23S rRNA-intervening sequence	0.56	49.0	4.82e-01	98.1%	93.0%
4yjwA00	1.20.120.930	Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Uncharacterised protein PF12889, N-terminal DUF3829	0.55	51.0	4.47e-01	100.0%	83.7%
2a0bA00	1.20.120.160	Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › HPT domain	0.55	35.0	3.40e-01	92.4%	56.8%
2wdqD00	1.20.1300.10	Mainly Alpha › Up-down Bundle › 3 helical TM bundles of succinate and fumarate reductases › Fumarate reductase/succinate dehydrogenase, transmembrane subunit	0.55	37.0	3.80e-01	99.0%	70.5%
5nl6A02	1.20.58.60	Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 ›	0.54	41.0	4.12e-01	80.0%	89.8%
3uumA00	1.20.58.60	Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 ›	0.54	43.0	4.12e-01	100.0%	73.0%
4dwlA00	1.20.1440.60	Mainly Alpha › Up-down Bundle › de novo design (two linked rop proteins) › 23S rRNA-intervening sequence	0.53	47.0	4.73e-01	99.0%	98.1%
3a06B03	1.10.1740.10	Mainly Alpha › Orthogonal Bundle › Rna Polymerase Sigma Factor; Chain: A › RNA polymerase sigma factor, region 2, helix turn helix motif	0.50	38.0	4.07e-01	91.4%	95.5%

ECOD (38)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
3240453	604.1.1.0 ↗	alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat	0.84	43.0	4.41e-01	100.0%	53.0%
3602716	604.5.1.2 ↗	alpha bundles › Spectrin repeat-like › PhoU-like (Pfam 01895) › PhoU-like (Pfam 01895) › PhoU	0.76	44.0	4.13e-01	100.0%	48.8%
4934657	4323.1.1.0 ↗	alpha bundles › helical bundle domain in vacuolar ATP synthase subunit C › helical bundle domain in vacuolar ATP synthase subunit C › helical bundle domain in vacuolar ATP synthase subunit C	0.75	46.0	3.88e-01	100.0%	38.8%
3855782	604.1.1.92 ↗	alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat › SR_desmoplakin_3	0.68	40.0	3.82e-01	100.0%	50.8%
3620978	2003.1.2.18 ↗	a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain	0.67	42.0	2.94e-01	100.0%	20.9%
3883667	604.1.1.0 ↗	alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat	0.67	41.0	4.17e-01	100.0%	61.9%
3435097	4177.1.1.11 ↗	alpha duplicates or obligate multimers › BAR/IMD domain-like › BAR/IMD domain-like › BAR/IMD domain-like › DUF632	0.67	49.0	3.64e-01	76.2%	96.6%
5019629	5058.1.1.0 ↗	alpha bundles › Mechanosensitive channel protein MscS (YggB), transmembrane region › Mechanosensitive channel protein MscS (YggB), transmembrane region › Mechanosensitive channel protein MscS (YggB), transmembrane region	0.66	37.0	3.39e-01	100.0%	43.0%
3758972	604.1.1.1 ↗	alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat › Spectrin	0.65	40.0	3.99e-01	100.0%	59.1%
4595958	632.22.1.0 ↗	alpha bundles › immunoglobulin/albumin-binding domain-like › Cell division protein EzrA repeats › Cell division protein EzrA repeats	0.63	47.0	4.64e-01	77.1%	92.7%
3846037	604.1.1.1 ↗	alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat › Spectrin	0.63	41.0	3.78e-01	100.0%	53.1%
3354926	9001.1.1.1 ↗	alpha bundles › TMEM120/ELO/TLC › TMEM120/ELO/TLC › TMEM120/ELO/TLC › TRAM_LAG1_CLN8	0.62	38.0	3.70e-01	100.0%	54.2%
3594129	4177.1.1.0 ↗	alpha duplicates or obligate multimers › BAR/IMD domain-like › BAR/IMD domain-like › BAR/IMD domain-like	0.62	47.0	3.65e-01	78.1%	86.0%
3880326	4177.2.1.0 ↗	alpha duplicates or obligate multimers › BAR/IMD domain-like › Inhibitor of kappaB kinase beta dimerization domain › Inhibitor of kappaB kinase beta dimerization domain	0.62	47.0	3.38e-01	80.0%	69.0%
5041130	601.14.1.0 ↗	alpha bundles › Four-helical up-and-down bundle › Hemerythrin › Hemerythrin	0.61	56.0	5.30e-01	100.0%	96.8%
3435981	109.4.1.0 ↗	alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat	0.61	48.0	4.84e-01	100.0%	81.9%
5053993	632.7.1.0 ↗	alpha bundles › immunoglobulin/albumin-binding domain-like › Heat shock protein 70kD (HSP70), C-terminal subdomain › Heat shock protein 70kD (HSP70), C-terminal subdomain	0.60	42.0	4.40e-01	80.0%	80.0%
3402492	4177.1.1.2 ↗	alpha duplicates or obligate multimers › BAR/IMD domain-like › BAR/IMD domain-like › BAR/IMD domain-like › BAR	0.60	44.0	3.42e-01	76.2%	88.4%
3272490	192.29.1.0 ↗	alpha bundles › Long alpha-hairpin › bMERB domain (bivalent Mical/EHBP Rab binding) › bMERB domain (bivalent Mical/EHBP Rab binding)	0.59	45.0	4.19e-01	80.0%	86.9%
3345179	633.4.1.1 ↗	alpha bundles › Bromodomain-like › Plant invertase/pectin methylesterase inhibitor › Plant invertase/pectin methylesterase inhibitor › PMEI	0.58	53.0	4.71e-01	100.0%	70.7%
3618558	4177.1.1.2 ↗	alpha duplicates or obligate multimers › BAR/IMD domain-like › BAR/IMD domain-like › BAR/IMD domain-like › BAR	0.58	44.0	3.47e-01	80.0%	84.8%
3805780	4177.1.1.0 ↗	alpha duplicates or obligate multimers › BAR/IMD domain-like › BAR/IMD domain-like › BAR/IMD domain-like	0.58	45.0	3.39e-01	81.0%	73.0%
3224632	604.1.1.1 ↗	alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat › Spectrin	0.57	44.0	4.49e-01	80.0%	94.3%
4963419	5050.1.1.0 ↗	alpha complex topology › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter	0.57	50.0	4.11e-01	99.0%	88.0%
1877523	604.1.1.0 ↗	alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat	0.57	41.0	4.01e-01	100.0%	69.6%
3574755	604.1.1.1 ↗	alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat › Spectrin	0.56	43.0	4.28e-01	80.0%	90.0%
3323416	3831.1.1.7 ↗	alpha bundles › Secreted protein of unknown function DUF1311 › Secreted protein of unknown function DUF1311 › Secreted protein of unknown function DUF1311 › DUF842	0.56	45.0	4.52e-01	86.7%	93.3%
3834430	3755.3.1.285 ↗	alpha bundles › YscO-like › CT398 helical hairpin › CT398 helical hairpin › NET2A	0.56	51.0	4.03e-01	97.1%	64.0%
3743463	4177.1.1.2 ↗	alpha duplicates or obligate multimers › BAR/IMD domain-like › BAR/IMD domain-like › BAR/IMD domain-like › BAR	0.56	43.0	3.43e-01	82.9%	82.7%
3800984	4177.1.1.0 ↗	alpha duplicates or obligate multimers › BAR/IMD domain-like › BAR/IMD domain-like › BAR/IMD domain-like	0.56	42.0	3.34e-01	80.0%	82.3%
3245538	604.1.1.0 ↗	alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat	0.56	41.0	4.19e-01	78.1%	92.4%
3900975	604.1.1.92 ↗	alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat › SR_desmoplakin_3	0.55	40.0	3.76e-01	76.2%	82.3%
3892397	4177.1.1.2 ↗	alpha duplicates or obligate multimers › BAR/IMD domain-like › BAR/IMD domain-like › BAR/IMD domain-like › BAR	0.55	43.0	3.17e-01	84.8%	80.0%
3385717	3755.3.1.0 ↗	alpha bundles › YscO-like › CT398 helical hairpin › CT398 helical hairpin	0.54	43.0	3.59e-01	100.0%	51.8%
3216480	5001.1.1.84 ↗	alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › 7TM_GPCR_Srz	0.54	46.0	3.32e-01	94.3%	81.3%
3984078	5085.1.1.1 ↗	a+b duplicates or obligate multimers › Outer membrane efflux proteins (OEP) › Outer membrane efflux proteins (OEP) › Outer membrane efflux proteins (OEP) › OEP	0.51	38.0	2.77e-01	78.1%	80.3%
3625262	174.1.1.1 ↗	few secondary structure elements › Tetraspanin transmembrane domain › Tetraspanin transmembrane domain › Tetraspanin transmembrane domain › Tetraspanin	0.51	46.0	3.93e-01	100.0%	90.0%
3361950	4177.1.1.5 ↗	alpha duplicates or obligate multimers › BAR/IMD domain-like › BAR/IMD domain-like › BAR/IMD domain-like › Vps5	0.51	41.0	3.11e-01	84.8%	82.2%

D4 medium residues 370-469

PDB

Domain cluster: rep: F-protein__YP_009316158__Anticarsia_gemmatalis_multiple_nucleopolyhedrovirus__268591__D313-389

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF12259.14 best	Baculo_F	116.8	1.60e-33	100.0%	16.6%

CATH (7)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
3mzkB01	6.20.50.30	Special › Other non-globular › N-terminal domain of TfIIb ›	0.63	23.0	3.61e-01	90.0%	86.8%
1vlaA01	2.20.25.10	Mainly Beta › Single Sheet › N-terminal domain of TfIIb ›	0.63	24.0	3.39e-01	93.0%	73.8%
1ml8A01	2.20.25.10	Mainly Beta › Single Sheet › N-terminal domain of TfIIb ›	0.62	21.0	3.31e-01	89.0%	79.4%
3jtzA00	3.30.160.390	Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Integrase, DNA-binding domain	0.55	30.0	3.32e-01	79.0%	64.9%
3pqhA01	2.20.220.20	Mainly Beta › Single Sheet › Glycosyl hydrolase fold ›	0.55	19.0	2.37e-01	88.0%	43.3%
3e99A00	3.10.450.50	Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, ›	0.54	31.0	2.79e-01	78.0%	37.8%
4aghA00	2.30.31.10	Mainly Beta › Roll › Transcriptional Co-activator pc4; Chain A › Transcriptional Coactivator Pc4; Chain A	0.53	36.0	3.94e-01	96.0%	88.7%

ECOD (3)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
3407194	5093.1.1.2 ↗	a+b complex topology › Head and neck region of the ectodomain of paramyxoviruses fusion glycoprotein › Head and neck region of the ectodomain of paramyxoviruses fusion glycoprotein › Head and neck region of the ectodomain of paramyxoviruses fusion glycoprotein › Baculo_F	0.83	75.0	4.86e-01	100.0%	24.6%
4363805	292.2.1.9 ↗	a+b two layers › RIP/Polo-box domain › Polo-box domain › Polo-box domain › Polo_box_4	0.55	36.0	3.82e-01	81.0%	73.3%
3198094	295.1.1.1 ↗	a+b two layers › ssDNA-binding transcriptional regulator domain-like › ssDNA-binding transcriptional regulator domain › ssDNA-binding transcriptional regulator domain › PC4	0.52	36.0	3.91e-01	96.0%	88.7%