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ENA-CEUD01013717-CEUD01013717-1_prodigal-single.1__X__X__00093
Bact-VirENA-CEUD01013717-CEUD01013717-1_prodigal-single.1__X__X__00093
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
medium
residues 68-171
Domain cluster:
rep: IMGVR_UViG_3300021493_000061-3300021493-Ga0190306_10019482__D61-155
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF24608.3 best | PDDEXK_15 | 42.0 | 1.40e-10 | 99.0% | 66.5% |
CATH (33)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3ieyB00 | 3.40.1350.150 | Alpha Beta › 3-Layer(aba) Sandwich › Trna Endonuclease; Chain: A, domain 1 › | 0.67 | 37.0 | 3.26e-01 | 80.8% | 36.8% |
| 5yk4A04 | 1.10.1420.10 | Mainly Alpha › Orthogonal Bundle › MutS, DNA mismatch repair protein; Chain A, domain 3 › | 0.63 | 34.0 | 3.15e-01 | 89.4% | 40.4% |
| 3ajvC02 | 3.40.1350.10 | Alpha Beta › 3-Layer(aba) Sandwich › Trna Endonuclease; Chain: A, domain 1 › | 0.62 | 36.0 | 3.88e-01 | 80.8% | 65.9% |
| 1gefA00 | 3.40.1350.10 | Alpha Beta › 3-Layer(aba) Sandwich › Trna Endonuclease; Chain: A, domain 1 › | 0.62 | 47.0 | 4.55e-01 | 95.2% | 70.0% |
| 1a79A01 | 3.40.1350.10 | Alpha Beta › 3-Layer(aba) Sandwich › Trna Endonuclease; Chain: A, domain 1 › | 0.61 | 37.0 | 3.81e-01 | 80.8% | 63.0% |
| 2eiyB02 | 3.20.10.10 | Alpha Beta › Alpha-Beta Barrel › D-amino Acid Aminotransferase; Chain A, domain 2 › D-amino Acid Aminotransferase, subunit A, domain 2 | 0.59 | 51.0 | 4.42e-01 | 96.2% | 82.3% |
| 3lulA02 | 3.20.10.10 | Alpha Beta › Alpha-Beta Barrel › D-amino Acid Aminotransferase; Chain A, domain 2 › D-amino Acid Aminotransferase, subunit A, domain 2 | 0.59 | 50.0 | 4.46e-01 | 96.2% | 85.2% |
| 4oa3A00 | 3.10.310.50 | Alpha Beta › Roll › Diaminopimelate Epimerase; Chain A, domain 1 › | 0.58 | 52.0 | 4.71e-01 | 100.0% | 76.6% |
| 3ktzA01 | 3.40.420.10 | Alpha Beta › 3-Layer(aba) Sandwich › Ricin (A subunit); domain 1 › Ricin (A subunit), domain 1 | 0.57 | 42.0 | 3.65e-01 | 78.8% | 98.2% |
| 2zyzC00 | 3.40.1350.10 | Alpha Beta › 3-Layer(aba) Sandwich › Trna Endonuclease; Chain: A, domain 1 › | 0.56 | 36.0 | 3.72e-01 | 80.8% | 68.8% |
| 2eo0B00 | 3.40.1350.10 | Alpha Beta › 3-Layer(aba) Sandwich › Trna Endonuclease; Chain: A, domain 1 › | 0.56 | 45.0 | 4.29e-01 | 100.0% | 73.4% |
| 1ce7A01 | 3.40.420.10 | Alpha Beta › 3-Layer(aba) Sandwich › Ricin (A subunit); domain 1 › Ricin (A subunit), domain 1 | 0.56 | 42.0 | 3.63e-01 | 78.8% | 98.1% |
| 1ewqA04 | 1.10.1420.10 | Mainly Alpha › Orthogonal Bundle › MutS, DNA mismatch repair protein; Chain A, domain 3 › | 0.56 | 32.0 | 2.99e-01 | 90.4% | 42.6% |
| 3a7rA01 | 3.30.930.10 | Alpha Beta › 2-Layer Sandwich › BirA Bifunctional Protein; domain 2 › Bira Bifunctional Protein; Domain 2 | 0.55 | 47.0 | 3.67e-01 | 97.1% | 86.3% |
| 5z1gB01 | 3.40.50.10480 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Brix domain | 0.55 | 41.0 | 3.26e-01 | 77.9% | 91.7% |
| 3ndhA00 | 3.40.600.30 | Alpha Beta › 3-Layer(aba) Sandwich › ECO RV Endonuclease; Chain A › | 0.55 | 39.0 | 3.13e-01 | 73.1% | 65.0% |
| 3thxB04 | 1.10.1420.10 | Mainly Alpha › Orthogonal Bundle › MutS, DNA mismatch repair protein; Chain A, domain 3 › | 0.55 | 31.0 | 2.94e-01 | 91.3% | 43.8% |
| 1zunB01 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.53 | 48.0 | 3.88e-01 | 100.0% | 57.6% |
| 6upsA01 | 3.40.395.10 | Alpha Beta › 3-Layer(aba) Sandwich › Adenoviral Proteinase; Chain › Adenoviral Proteinase; Chain A | 0.53 | 45.0 | 4.04e-01 | 98.1% | 79.4% |
| 3ab8A00 | 3.40.50.12370 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › | 0.52 | 39.0 | 2.93e-01 | 94.2% | 31.4% |
| 4wnyA00 | 3.40.50.620 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › HUPs | 0.52 | 38.0 | 3.52e-01 | 92.3% | 59.8% |
| 1rznA00 | 3.40.1350.10 | Alpha Beta › 3-Layer(aba) Sandwich › Trna Endonuclease; Chain: A, domain 1 › | 0.52 | 45.0 | 4.04e-01 | 97.1% | 72.0% |
| 6mtzA01 | 3.10.310.30 | Alpha Beta › Roll › Diaminopimelate Epimerase; Chain A, domain 1 › | 0.52 | 44.0 | 4.39e-01 | 94.2% | 93.5% |
| 1dgmA01 | 3.40.1190.20 | Alpha Beta › 3-Layer(aba) Sandwich › UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase › Ribokinase | 0.52 | 43.0 | 3.22e-01 | 92.3% | 60.9% |
| 5zyuA01 | 3.90.320.10 | Alpha Beta › Alpha-Beta Complex › Lambda Exonuclease; Chain A › | 0.52 | 40.0 | 3.20e-01 | 81.7% | 49.8% |
| 5axgA02 | 3.20.20.80 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Glycosidases | 0.51 | 43.0 | 3.08e-01 | 94.2% | 83.8% |
| 2azpA02 | 3.10.310.10 | Alpha Beta › Roll › Diaminopimelate Epimerase; Chain A, domain 1 › Diaminopimelate Epimerase; Chain A, domain 1 | 0.51 | 43.0 | 3.78e-01 | 94.2% | 92.4% |
| 3dlaB01 | 3.60.110.10 | Alpha Beta › 4-Layer Sandwich › Nitrilase/N-carbamoyl-D-aminoacid amidohydrolase › Carbon-nitrogen hydrolase | 0.51 | 44.0 | 3.21e-01 | 100.0% | 92.5% |
| 3e38B01 | 3.20.20.140 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Metal-dependent hydrolases | 0.51 | 45.0 | 3.43e-01 | 99.0% | 71.8% |
| 2gm3A00 | 3.40.50.620 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › HUPs | 0.51 | 36.0 | 3.20e-01 | 92.3% | 51.0% |
| 5u4qB00 | 3.40.50.720 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain | 0.51 | 41.0 | 3.05e-01 | 91.3% | 91.8% |
| 1euvA02 | 3.30.310.130 | Alpha Beta › 2-Layer Sandwich › TATA-Binding Protein › Ubiquitin-related | 0.50 | 40.0 | 4.02e-01 | 86.5% | 100.0% |
| 1e4eA03 | 3.40.50.20 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › | 0.50 | 40.0 | 3.83e-01 | 96.2% | 75.0% |
ECOD (51)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 5069954 | 2008.1.1.3 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › Hjc | 0.66 | 48.0 | 4.64e-01 | 96.2% | 66.9% |
| 4528015 | 316.1.1.0 ↗ | a+b three layers › Nucleotidyltransferase-like › Nucleotidyltransferase › Nucleotidyltransferase | 0.65 | 41.0 | 3.31e-01 | 87.5% | 33.3% |
| 5066412 | 2008.1.1.3 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › Hjc | 0.65 | 50.0 | 4.81e-01 | 96.2% | 70.8% |
| 4122519 | 316.1.1.48 ↗ | a+b three layers › Nucleotidyltransferase-like › Nucleotidyltransferase › Nucleotidyltransferase › MdcG | 0.63 | 40.0 | 3.76e-01 | 87.5% | 52.0% |
| 4029898 | 5104.1.1.0 ↗ | a+b three layers › C-terminal domain in DHH phosphoesterases › C-terminal domain in DHH phosphoesterases › C-terminal domain in DHH phosphoesterases | 0.63 | 56.0 | 5.02e-01 | 100.0% | 86.2% |
| 3588817 | 5104.1.1.1 ↗ | a+b three layers › C-terminal domain in DHH phosphoesterases › C-terminal domain in DHH phosphoesterases › C-terminal domain in DHH phosphoesterases › DHHA1 | 0.63 | 56.0 | 5.38e-01 | 100.0% | 85.8% |
| 3789678 | 601.23.1.0 ↗ | alpha bundles › Four-helical up-and-down bundle › DNA repair protein MutS, domain III › DNA repair protein MutS, domain III | 0.62 | 36.0 | 2.51e-01 | 91.3% | 17.6% |
| 3617695 | 601.23.1.4 ↗ | alpha bundles › Four-helical up-and-down bundle › DNA repair protein MutS, domain III › DNA repair protein MutS, domain III › MutS_IV, MutS_III | 0.62 | 36.0 | 2.48e-01 | 91.3% | 17.1% |
| 3965775 | 4045.1.1.1 ↗ | a+b two layers › barrel domain in D-aminoacid aminotransferase-like PLP-dependent enzymes › barrel domain in D-aminoacid aminotransferase-like PLP-dependent enzymes › barrel domain in D-aminoacid aminotransferase-like PLP-dependent enzymes › Aminotran_4 | 0.61 | 52.0 | 4.84e-01 | 96.2% | 96.3% |
| 4109850 | 601.23.1.4 ↗ | alpha bundles › Four-helical up-and-down bundle › DNA repair protein MutS, domain III › DNA repair protein MutS, domain III › MutS_IV, MutS_III | 0.61 | 35.0 | 2.52e-01 | 90.4% | 19.7% |
| 4962753 | 601.23.1.1 ↗ | alpha bundles › Four-helical up-and-down bundle › DNA repair protein MutS, domain III › DNA repair protein MutS, domain III › MutS_III | 0.61 | 35.0 | 2.48e-01 | 90.4% | 19.3% |
| 2576233 | 2008.1.1.65 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › L_protein_N | 0.60 | 39.0 | 3.18e-01 | 90.4% | 34.8% |
| 4636696 | 601.23.1.4 ↗ | alpha bundles › Four-helical up-and-down bundle › DNA repair protein MutS, domain III › DNA repair protein MutS, domain III › MutS_IV, MutS_III | 0.60 | 34.0 | 2.44e-01 | 90.4% | 19.0% |
| 3941868 | 5104.1.1.1 ↗ | a+b three layers › C-terminal domain in DHH phosphoesterases › C-terminal domain in DHH phosphoesterases › C-terminal domain in DHH phosphoesterases › DHHA1 | 0.59 | 53.0 | 4.88e-01 | 100.0% | 80.7% |
| 4121534 | 601.23.1.4 ↗ | alpha bundles › Four-helical up-and-down bundle › DNA repair protein MutS, domain III › DNA repair protein MutS, domain III › MutS_IV, MutS_III | 0.59 | 34.0 | 2.38e-01 | 91.3% | 17.6% |
| 4524608 | 2008.1.1.3 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › Hjc | 0.59 | 45.0 | 4.25e-01 | 94.2% | 66.2% |
| 5036502 | 2008.1.1.3 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › Hjc | 0.59 | 39.0 | 3.97e-01 | 85.6% | 67.6% |
| 3193327 | 314.1.1.12 ↗ | a+b three layers › Class II aaRS and biotin synthetases › Class II aaRS and biotin synthetases › Class II aaRS and biotin synthetases › LplA-B_cat | 0.59 | 51.0 | 3.70e-01 | 98.1% | 92.6% |
| 4969654 | 601.23.1.0 ↗ | alpha bundles › Four-helical up-and-down bundle › DNA repair protein MutS, domain III › DNA repair protein MutS, domain III | 0.59 | 34.0 | 2.47e-01 | 90.4% | 20.4% |
| 4951445 | 601.23.1.1 ↗ | alpha bundles › Four-helical up-and-down bundle › DNA repair protein MutS, domain III › DNA repair protein MutS, domain III › MutS_III | 0.58 | 34.0 | 2.42e-01 | 90.4% | 19.0% |
| 5022411 | 5104.1.1.1 ↗ | a+b three layers › C-terminal domain in DHH phosphoesterases › C-terminal domain in DHH phosphoesterases › C-terminal domain in DHH phosphoesterases › DHHA1 | 0.58 | 51.0 | 4.94e-01 | 96.2% | 87.8% |
| 4384457 | 2008.1.1.3 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › Hjc | 0.58 | 46.0 | 4.31e-01 | 96.2% | 68.5% |
| 4942264 | 2008.1.1.3 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › Hjc | 0.58 | 46.0 | 4.32e-01 | 92.3% | 69.6% |
| 5013306 | 2008.1.1.0 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like | 0.58 | 51.0 | 4.49e-01 | 98.1% | 73.5% |
| 4095689 | 601.23.1.4 ↗ | alpha bundles › Four-helical up-and-down bundle › DNA repair protein MutS, domain III › DNA repair protein MutS, domain III › MutS_IV, MutS_III | 0.58 | 34.0 | 2.42e-01 | 91.3% | 19.3% |
| 4943696 | 601.23.1.0 ↗ | alpha bundles › Four-helical up-and-down bundle › DNA repair protein MutS, domain III › DNA repair protein MutS, domain III | 0.58 | 34.0 | 2.44e-01 | 91.3% | 19.3% |
| 4416596 | 601.23.1.4 ↗ | alpha bundles › Four-helical up-and-down bundle › DNA repair protein MutS, domain III › DNA repair protein MutS, domain III › MutS_IV, MutS_III | 0.58 | 33.0 | 2.40e-01 | 90.4% | 19.3% |
| 4160947 | 601.23.1.4 ↗ | alpha bundles › Four-helical up-and-down bundle › DNA repair protein MutS, domain III › DNA repair protein MutS, domain III › MutS_IV, MutS_III | 0.57 | 34.0 | 2.42e-01 | 91.3% | 19.3% |
| 4946143 | 2008.1.1.0 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like | 0.57 | 47.0 | 4.30e-01 | 96.2% | 68.1% |
| 4135238 | 601.23.1.4 ↗ | alpha bundles › Four-helical up-and-down bundle › DNA repair protein MutS, domain III › DNA repair protein MutS, domain III › MutS_IV, MutS_III | 0.57 | 33.0 | 2.40e-01 | 90.4% | 20.0% |
| 4078587 | 601.23.1.4 ↗ | alpha bundles › Four-helical up-and-down bundle › DNA repair protein MutS, domain III › DNA repair protein MutS, domain III › MutS_IV, MutS_III | 0.57 | 34.0 | 2.39e-01 | 91.3% | 18.5% |
| 4600010 | 601.23.1.4 ↗ | alpha bundles › Four-helical up-and-down bundle › DNA repair protein MutS, domain III › DNA repair protein MutS, domain III › MutS_IV, MutS_III | 0.57 | 33.0 | 2.40e-01 | 91.3% | 19.3% |
| 4084820 | 601.23.1.4 ↗ | alpha bundles › Four-helical up-and-down bundle › DNA repair protein MutS, domain III › DNA repair protein MutS, domain III › MutS_IV, MutS_III | 0.57 | 33.0 | 2.43e-01 | 91.3% | 20.3% |
| 4206083 | 601.23.1.4 ↗ | alpha bundles › Four-helical up-and-down bundle › DNA repair protein MutS, domain III › DNA repair protein MutS, domain III › MutS_IV, MutS_III | 0.57 | 33.0 | 2.38e-01 | 91.3% | 19.7% |
| 4948107 | 5104.1.1.0 ↗ | a+b three layers › C-terminal domain in DHH phosphoesterases › C-terminal domain in DHH phosphoesterases › C-terminal domain in DHH phosphoesterases | 0.56 | 49.0 | 4.73e-01 | 98.1% | 90.0% |
| 4515483 | 601.23.1.4 ↗ | alpha bundles › Four-helical up-and-down bundle › DNA repair protein MutS, domain III › DNA repair protein MutS, domain III › MutS_IV, MutS_III | 0.56 | 33.0 | 2.35e-01 | 90.4% | 19.0% |
| 3247951 | 5104.1.1.0 ↗ | a+b three layers › C-terminal domain in DHH phosphoesterases › C-terminal domain in DHH phosphoesterases › C-terminal domain in DHH phosphoesterases | 0.56 | 49.0 | 4.57e-01 | 98.1% | 89.2% |
| 3972418 | 2005.1.1.3 ↗ | a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › Usp | 0.55 | 38.0 | 3.49e-01 | 92.3% | 54.1% |
| 4074416 | 2008.1.1.67 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › RecC_C | 0.55 | 41.0 | 2.91e-01 | 78.8% | 50.6% |
| 5040706 | 2005.1.1.0 ↗ | a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains | 0.55 | 39.0 | 3.62e-01 | 94.2% | 55.7% |
| 4991180 | 2008.1.1.3 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › Hjc | 0.55 | 47.0 | 4.39e-01 | 94.2% | 81.5% |
| 4268079 | 149.1.1.1 ↗ | alpha arrays › Cytochrome P450 › Cytochrome P450 › Cytochrome P450 › p450 | 0.55 | 46.0 | 2.99e-01 | 94.2% | 68.3% |
| 3380863 | 2007.2.3.9 ↗ | a/b three-layered sandwiches › Flavodoxin-like › Flavoproteins/Phosphotyrosine protein phosphatases-like › (Phosphotyrosine protein) phosphatases II › PTPlike_phytase | 0.54 | 40.0 | 2.47e-01 | 78.8% | 32.3% |
| 3990348 | 601.23.1.4 ↗ | alpha bundles › Four-helical up-and-down bundle › DNA repair protein MutS, domain III › DNA repair protein MutS, domain III › MutS_IV, MutS_III | 0.54 | 34.0 | 2.56e-01 | 84.6% | 24.9% |
| 4962920 | 5104.1.1.0 ↗ | a+b three layers › C-terminal domain in DHH phosphoesterases › C-terminal domain in DHH phosphoesterases › C-terminal domain in DHH phosphoesterases | 0.53 | 47.0 | 4.26e-01 | 100.0% | 77.9% |
| 1406486 | 2005.1.1.3 ↗ | a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › Usp | 0.52 | 38.0 | 3.52e-01 | 92.3% | 59.8% |
| 4941691 | 2008.1.1.16 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › Mrr_cat | 0.52 | 45.0 | 4.00e-01 | 97.1% | 69.5% |
| 3388234 | 2006.1.2.0 ↗ | a/b three-layered sandwiches › HAD domain-like › HAD domain-related › DHH phosphoesterases | 0.52 | 45.0 | 3.21e-01 | 96.2% | 32.8% |
| 3839890 | 5104.1.1.0 ↗ | a+b three layers › C-terminal domain in DHH phosphoesterases › C-terminal domain in DHH phosphoesterases › C-terminal domain in DHH phosphoesterases | 0.51 | 43.0 | 3.06e-01 | 93.3% | 30.8% |
| 4645759 | 286.1.1.4 ↗ | a+b complex topology › Diaminopimelate epimerase-like › Diaminopimelate epimerase-like › Diaminopimelate epimerase-like › Pro_racemase | 0.51 | 41.0 | 3.43e-01 | 90.4% | 73.3% |
| 4066769 | 2008.1.1.6 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › UPF0102 | 0.50 | 38.0 | 3.82e-01 | 80.8% | 80.6% |