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ENA-CEUD01013717-CEUD01013717-1_prodigal-single.1__X__X__00126

Bact-Vir

ENA-CEUD01013717-CEUD01013717-1_prodigal-single.1__X__X__00126

Identity

Kingdom:
phage

Quality

93.4 mean pLDDT

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 4-74
PDB
CATH (44)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3bk5A00 2.50.20.10 Mainly Beta › Clam › outer membrane lipoprotein receptor (LolB), chain A › Lipoprotein localisation LolA/LolB/LppX 0.69 50.0 3.48e-01 77.5% 29.4%
4jpqA00 2.60.40.1190 Mainly Beta › Sandwich › Immunoglobulin-like › 0.66 51.0 3.62e-01 84.5% 81.3%
7ne4A01 2.130.10.120 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › Prolyl oligopeptidase, N-terminal domain 0.63 52.0 3.37e-01 91.5% 37.1%
2qdeA01 3.30.390.10 Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › Enolase-like, N-terminal domain 0.63 49.0 4.06e-01 87.3% 99.3%
3lhnA00 2.40.128.640 Mainly Beta › Beta Barrel › Lipocalin › 0.63 48.0 4.24e-01 83.1% 89.7%
3it8D01 3.30.500.10 Alpha Beta › 2-Layer Sandwich › Murine Class I Major Histocompatibility Complex, H2-DB; Chain A, domain 1 › MHC class I-like antigen recognition-like 0.62 43.0 3.24e-01 73.2% 36.7%
4mxtA00 2.50.20.10 Mainly Beta › Clam › outer membrane lipoprotein receptor (LolB), chain A › Lipoprotein localisation LolA/LolB/LppX 0.62 47.0 3.55e-01 84.5% 75.9%
4ifdI02 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.60 41.0 3.25e-01 70.4% 68.8%
7odhL01 1.10.645.10 Mainly Alpha › Orthogonal Bundle › Cytochrome-c3 Hydrogenase; chain B › Cytochrome-c3 Hydrogenase, chain B 0.60 47.0 2.80e-01 84.5% 95.3%
1t4lB00 3.30.160.20 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › 0.59 42.0 3.98e-01 77.5% 78.9%
2wkkA00 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.59 45.0 3.62e-01 85.9% 85.3%
4yokA01 2.60.40.1120 Mainly Beta › Sandwich › Immunoglobulin-like › Carboxypeptidase-like, regulatory domain 0.58 38.0 3.51e-01 93.0% 50.0%
1yemB00 2.40.320.10 Mainly Beta › Beta Barrel › Hypothetical Protein Pfu-838710-001 › Hypothetical Protein Pfu-838710-001 0.58 43.0 3.40e-01 83.1% 72.3%
1h7sA01 3.30.565.10 Alpha Beta › 2-Layer Sandwich › Heat Shock Protein 90 › Histidine kinase-like ATPase, C-terminal domain 0.58 40.0 2.91e-01 71.8% 85.0%
7dd9A02 2.70.98.30 Mainly Beta › Distorted Sandwich › Beta-galactosidase; Chain A, domain 5 › Golgi alpha-mannosidase II; domain 4 0.58 45.0 3.07e-01 84.5% 43.6%
8ornD01 2.50.20.10 Mainly Beta › Clam › outer membrane lipoprotein receptor (LolB), chain A › Lipoprotein localisation LolA/LolB/LppX 0.58 44.0 3.41e-01 85.9% 88.1%
1zswA01 3.10.180.10 Alpha Beta › Roll › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase; domain 1 › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase, domain 1 0.57 50.0 3.82e-01 100.0% 82.6%
2fblB00 2.40.320.10 Mainly Beta › Beta Barrel › Hypothetical Protein Pfu-838710-001 › Hypothetical Protein Pfu-838710-001 0.57 45.0 3.57e-01 85.9% 82.4%
3oe3C00 2.40.128.200 Mainly Beta › Beta Barrel › Lipocalin › C-type lysozyme inhibitor 0.57 41.0 3.87e-01 77.5% 98.9%
2ei0A02 3.10.180.10 Alpha Beta › Roll › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase; domain 1 › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase, domain 1 0.57 48.0 3.82e-01 95.8% 76.3%
4h75A00 2.80.10.70 Mainly Beta › Trefoil › Trefoil (Acidic Fibroblast Growth Factor, subunit A) › Spindlin/Ssty 0.57 44.0 3.21e-01 84.5% 31.2%
1vkcA01 3.40.630.30 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) 0.57 44.0 3.51e-01 83.1% 76.3%
7emfR01 2.40.320.10 Mainly Beta › Beta Barrel › Hypothetical Protein Pfu-838710-001 › Hypothetical Protein Pfu-838710-001 0.57 49.0 3.76e-01 100.0% 73.7%
6euaA01 3.90.215.10 Alpha Beta › Alpha-Beta Complex › Gamma Fibrinogen; Chain A, domain 1 › Gamma Fibrinogen, chain A, domain 1 0.56 39.0 3.16e-01 84.5% 36.7%
2vldB01 2.70.180.20 Mainly Beta › Distorted Sandwich › Protein Yojf; Chain: A; › 0.56 43.0 3.70e-01 84.5% 74.6%
4h89A00 3.40.630.30 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) 0.55 46.0 3.41e-01 88.7% 64.9%
2ichA02 2.40.370.10 Mainly Beta › Beta Barrel › AttH-like fold › AttH-like domain 0.55 42.0 3.56e-01 85.9% 96.2%
3doaA01 2.30.310.10 Mainly Beta › Roll › ibrinogen binding protein from staphylococcus aureus fold › ibrinogen binding protein from staphylococcus aureus domain 0.54 44.0 3.53e-01 91.5% 82.4%
4pz6A02 3.30.470.30 Alpha Beta › 2-Layer Sandwich › D-amino Acid Aminotransferase; Chain A, domain 1 › DNA ligase/mRNA capping enzyme 0.54 43.0 3.14e-01 94.4% 70.8%
2m7oA00 3.10.450.400 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › Uncharacterised protein PF15513, DUF4651 0.53 40.0 4.02e-01 84.5% 82.9%
1lwuC01 3.90.215.10 Alpha Beta › Alpha-Beta Complex › Gamma Fibrinogen; Chain A, domain 1 › Gamma Fibrinogen, chain A, domain 1 0.53 37.0 2.99e-01 84.5% 35.1%
2r1bA00 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.53 42.0 3.08e-01 85.9% 57.6%
3ugfB02 2.60.120.560 Mainly Beta › Sandwich › Jelly Rolls › Exo-inulinase; domain 1 0.53 40.0 3.12e-01 84.5% 86.4%
1iucA00 2.120.10.70 Mainly Beta › 6 Propeller › Neuraminidase › Fucose-specific lectin 0.53 44.0 2.94e-01 94.4% 24.0%
1sgoA01 3.30.2280.10 Alpha Beta › 2-Layer Sandwich › copper amine oxidase-like fold › Hypothetical protein (hspc210) 0.53 42.0 3.76e-01 93.0% 60.2%
1tkjA00 3.40.630.10 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Zn peptidases 0.53 43.0 2.99e-01 93.0% 39.4%
3kf3A02 2.60.120.560 Mainly Beta › Sandwich › Jelly Rolls › Exo-inulinase; domain 1 0.53 42.0 3.24e-01 90.1% 63.3%
3hxlA02 2.60.40.4290 Mainly Beta › Sandwich › Immunoglobulin-like › 0.53 46.0 4.28e-01 100.0% 80.0%
4eqvA02 2.60.120.560 Mainly Beta › Sandwich › Jelly Rolls › Exo-inulinase; domain 1 0.52 42.0 3.23e-01 90.1% 62.5%
1q48A00 3.90.1010.10 Alpha Beta › Alpha-Beta Complex › Sufe protein. Chain: A › 0.52 41.0 3.42e-01 88.7% 79.9%
2nykA01 3.30.500.30 Alpha Beta › 2-Layer Sandwich › Murine Class I Major Histocompatibility Complex, H2-DB; Chain A, domain 1 › 0.51 39.0 3.15e-01 84.5% 78.4%
2hv2A03 3.40.630.30 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) 0.51 44.0 3.50e-01 97.2% 69.1%
7obmA01 2.130.10.120 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › Prolyl oligopeptidase, N-terminal domain 0.50 43.0 2.83e-01 97.2% 84.1%
1f8vC00 2.60.120.20 Mainly Beta › Sandwich › Jelly Rolls › 0.50 43.0 2.87e-01 100.0% 66.6%
ECOD (61)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4975431 331.3.1.0 a+b two layers › TBP-like › Bet v1-like › Bet v1-like 0.69 50.0 4.58e-01 76.1% 65.6%
4023222 7556.1.1.0 a/b three-layered sandwiches › Fe-only hydrogenase › Fe-only hydrogenase › Fe-only hydrogenase 0.68 48.0 2.98e-01 73.2% 16.7%
3415886 220.1.1.146 beta barrels › PH domain-like › PH domain-like › PH domain-like › PH_NDK7_N 0.67 52.0 4.95e-01 84.5% 89.4%
3057477 220.1.1.146 beta barrels › PH domain-like › PH domain-like › PH domain-like › PH_NDK7_N 0.66 54.0 5.05e-01 91.5% 86.8%
3703442 220.1.1.0 beta barrels › PH domain-like › PH domain-like › PH domain-like 0.66 52.0 4.94e-01 87.3% 91.8%
3588775 244.3.1.5 a+b two layers › FAD-linked reductases, C-terminal domain-like › SufE/NifU › SufE/NifU › GutM 0.65 56.0 4.99e-01 97.2% 88.6%
3799509 225.1.1.7 a+b two layers › ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase-like › ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase › ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase › HATPase_c_3 0.65 39.0 2.76e-01 84.5% 20.0%
3976796 244.3.1.5 a+b two layers › FAD-linked reductases, C-terminal domain-like › SufE/NifU › SufE/NifU › GutM 0.63 53.0 4.84e-01 97.2% 91.9%
4024322 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.63 49.0 4.81e-01 84.5% 82.7%
3473704 220.1.1.0 beta barrels › PH domain-like › PH domain-like › PH domain-like 0.63 48.0 4.59e-01 84.5% 89.4%
1144731 233.1.1.4 a+b two layers › MHC antigen-recognition domain › MHC antigen-recognition domain › MHC antigen-recognition domain › M157 0.63 44.0 3.47e-01 73.2% 78.1%
4404709 71.1.1.3 beta meanders › Lipoprotein localization factors LolAB › Lipoprotein localization factors LolAB › Lipoprotein localization factors LolAB › LolB 0.63 47.0 3.66e-01 84.5% 85.7%
3618922 4.1.1.19 beta barrels › SH3 › SH3 › SH3 › LSM 0.62 48.0 4.39e-01 84.5% 72.6%
3798461 220.1.1.0 beta barrels › PH domain-like › PH domain-like › PH domain-like 0.62 53.0 4.53e-01 97.2% 84.2%
4953814 243.3.1.0 a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin 0.62 45.0 4.79e-01 78.9% 93.3%
4944706 206.1.1.10 a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › Choline_kinase 0.62 47.0 3.22e-01 83.1% 36.7%
3611339 330.1.1.0 a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like 0.62 44.0 4.20e-01 76.1% 78.8%
3265309 4026.1.1.0 a+b three layers › a+b domain in Rap/Ran-GAP (Pfam 02145) › a+b domain in Rap/Ran-GAP (Pfam 02145) › a+b domain in Rap/Ran-GAP (Pfam 02145) 0.61 52.0 4.22e-01 98.6% 73.6%
2524022 4998.1.1.1 beta sandwiches › Flagellar hook protein flgE D2 domain-like › Flagellar hook protein flgE D2 domain › Flagellar hook protein flgE D2 domain › FlgE_D2 0.61 47.0 3.36e-01 84.5% 51.8%
3259296 71.1.1.0 beta meanders › Lipoprotein localization factors LolAB › Lipoprotein localization factors LolAB › Lipoprotein localization factors LolAB 0.60 46.0 3.71e-01 84.5% 92.0%
4024399 844.1.1.1 beta barrels › Transcriptional factor tubby, C-terminal domain › Transcriptional factor tubby, C-terminal domain › Transcriptional factor tubby, C-terminal domain › Tub 0.60 45.0 3.09e-01 80.3% 46.2%
4957722 71.1.1.0 beta meanders › Lipoprotein localization factors LolAB › Lipoprotein localization factors LolAB › Lipoprotein localization factors LolAB 0.60 47.0 3.83e-01 85.9% 94.9%
5007759 213.1.1.0 a+b three layers › Nat/Ivy › Acyl-CoA N-acyltransferases (Nat) › Acyl-CoA N-acyltransferases (Nat) 0.60 47.0 3.97e-01 83.1% 80.7%
3233110 4.1.1.19 beta barrels › SH3 › SH3 › SH3 › LSM 0.58 44.0 4.08e-01 84.5% 76.5%
3559550 11.1.1.179 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Ig_3 0.58 47.0 2.87e-01 90.1% 25.5%
3926363 220.1.1.0 beta barrels › PH domain-like › PH domain-like › PH domain-like 0.58 48.0 4.15e-01 93.0% 75.7%
3806012 5.1.3.67 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › FBA_1 0.58 49.0 3.22e-01 95.8% 75.4%
3711682 206.1.1.0 a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase 0.57 39.0 2.53e-01 70.4% 33.2%
5075159 844.1.1.2 beta barrels › Transcriptional factor tubby, C-terminal domain › Transcriptional factor tubby, C-terminal domain › Transcriptional factor tubby, C-terminal domain › LOR 0.57 47.0 3.62e-01 91.5% 92.1%
3934170 241.4.1.1 a+b two layers › Type III secretory system chaperone-like › Hypothetical protein c14orf129, hspc210 › Hypothetical protein c14orf129, hspc210 › GSKIP_dom 0.57 42.0 3.89e-01 80.3% 88.4%
3261967 633.23.1.0 alpha bundles › Bromodomain-like › Claudin › Claudin 0.57 45.0 3.26e-01 88.7% 76.0%
3753034 5.1.4.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.57 45.0 2.89e-01 91.5% 27.3%
3337523 2484.1.1.67 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › RVT_3 0.56 41.0 3.14e-01 77.5% 77.6%
3646521 4.2.1.4 beta barrels › SH3 › SAND › SAND › TDBD 0.56 45.0 4.48e-01 90.1% 92.0%
902 4252.1.1.1 beta barrels › AttH-like › AttH-like › AttH-like › CrtC 0.56 43.0 3.60e-01 85.9% 96.2%
3236833 12.3.1.13 beta sandwiches › Glycosyl hydrolase domain-like › supersandwich › supersandwich › Glyco_hydro_38C 0.56 43.0 2.94e-01 85.9% 45.4%
5014688 243.3.1.0 a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin 0.55 38.0 4.04e-01 80.3% 92.7%
3669346 331.23.1.0 a+b two layers › TBP-like › Integrator IntS9/IntS11 C-terminal domain › Integrator IntS9/IntS11 C-terminal domain 0.55 41.0 4.00e-01 80.3% 72.2%
3527683 5.1.5.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed 0.55 44.0 2.86e-01 93.0% 31.8%
4991490 243.3.1.0 a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin 0.55 41.0 4.29e-01 83.1% 90.8%
3411714 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.55 38.0 3.85e-01 84.5% 74.3%
3403936 241.4.1.1 a+b two layers › Type III secretory system chaperone-like › Hypothetical protein c14orf129, hspc210 › Hypothetical protein c14orf129, hspc210 › GSKIP_dom 0.54 44.0 3.96e-01 93.0% 77.1%
3680131 844.1.1.2 beta barrels › Transcriptional factor tubby, C-terminal domain › Transcriptional factor tubby, C-terminal domain › Transcriptional factor tubby, C-terminal domain › LOR 0.54 44.0 3.09e-01 87.3% 83.1%
3383213 5.1.3.67 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › FBA_1 0.54 44.0 2.97e-01 94.4% 37.0%
5030570 633.23.1.0 alpha bundles › Bromodomain-like › Claudin › Claudin 0.54 44.0 3.48e-01 94.4% 80.0%
3827447 844.1.1.2 beta barrels › Transcriptional factor tubby, C-terminal domain › Transcriptional factor tubby, C-terminal domain › Transcriptional factor tubby, C-terminal domain › LOR 0.54 46.0 3.40e-01 97.2% 87.2%
4955729 10.1.1.0 beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases 0.53 38.0 2.99e-01 77.5% 65.9%
3931696 241.4.1.1 a+b two layers › Type III secretory system chaperone-like › Hypothetical protein c14orf129, hspc210 › Hypothetical protein c14orf129, hspc210 › GSKIP_dom 0.53 43.0 3.89e-01 93.0% 68.6%
3349878 844.1.1.2 beta barrels › Transcriptional factor tubby, C-terminal domain › Transcriptional factor tubby, C-terminal domain › Transcriptional factor tubby, C-terminal domain › LOR 0.53 40.0 3.05e-01 83.1% 45.7%
3908594 5.1.4.1 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40 0.53 46.0 3.00e-01 100.0% 85.9%
4975453 844.1.1.2 beta barrels › Transcriptional factor tubby, C-terminal domain › Transcriptional factor tubby, C-terminal domain › Transcriptional factor tubby, C-terminal domain › LOR 0.53 46.0 3.49e-01 95.8% 84.6%
3433666 844.1.1.2 beta barrels › Transcriptional factor tubby, C-terminal domain › Transcriptional factor tubby, C-terminal domain › Transcriptional factor tubby, C-terminal domain › LOR 0.53 41.0 3.10e-01 87.3% 42.1%
3301582 844.1.1.2 beta barrels › Transcriptional factor tubby, C-terminal domain › Transcriptional factor tubby, C-terminal domain › Transcriptional factor tubby, C-terminal domain › LOR 0.53 44.0 3.24e-01 93.0% 78.5%
3388541 241.4.1.1 a+b two layers › Type III secretory system chaperone-like › Hypothetical protein c14orf129, hspc210 › Hypothetical protein c14orf129, hspc210 › GSKIP_dom 0.53 43.0 3.96e-01 93.0% 70.5%
4471281 10.1.1.89 beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases › PF26321 0.53 40.0 2.83e-01 83.1% 56.6%
5070420 213.1.1.0 a+b three layers › Nat/Ivy › Acyl-CoA N-acyltransferases (Nat) › Acyl-CoA N-acyltransferases (Nat) 0.53 45.0 3.57e-01 93.0% 60.7%
None 0.53 44.0 2.63e-01 100.0% 82.4%
2866962 4.31.1.1 beta barrels › SH3 › Central WYL domain of RspWYL1 › Central WYL domain of RspWYL1 › WYL 0.52 41.0 3.60e-01 88.7% 57.4%
3494553 220.1.1.0 beta barrels › PH domain-like › PH domain-like › PH domain-like 0.51 40.0 3.48e-01 87.3% 66.7%
5046573 844.1.1.2 beta barrels › Transcriptional factor tubby, C-terminal domain › Transcriptional factor tubby, C-terminal domain › Transcriptional factor tubby, C-terminal domain › LOR 0.51 44.0 3.38e-01 94.4% 79.4%
4134639 325.1.7.0 a+b complex topology › alpha/beta-Hammerhead/Barrel-sandwich hybrid › alpha/beta-Hammerhead/Barrel-sandwich hybrid › Single hybrid motif 0.50 45.0 4.03e-01 100.0% 82.0%