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ENA-CEUD01013717-CEUD01013717-1_prodigal-single.1__X__X__00133

Bact-Vir

ENA-CEUD01013717-CEUD01013717-1_prodigal-single.1__X__X__00133

Identity

Kingdom:
phage

Quality

77.6 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 3-101
PDB
Domain cluster: representative
CATH (28)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
4l9cA00 3.40.1000.30 Alpha Beta › 3-Layer(aba) Sandwich › Protein Transport Mog1p; Chain A › 0.63 43.0 3.80e-01 70.7% 64.0%
4hbrA00 3.10.450.360 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.62 44.0 3.94e-01 73.7% 52.9%
5c2vB00 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.60 41.0 2.82e-01 70.7% 29.3%
4eqaC00 2.40.128.650 Mainly Beta › Beta Barrel › Lipocalin › 0.59 43.0 3.79e-01 76.8% 62.0%
4ge1C00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.59 43.0 3.47e-01 76.8% 98.4%
8adlB01 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.58 41.0 2.86e-01 72.7% 28.6%
3hrgA02 3.30.420.260 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › Protein of unknown function DUF3822, C-terminal domain 0.58 40.0 3.87e-01 75.8% 62.3%
3iujA02 2.130.10.120 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › Prolyl oligopeptidase, N-terminal domain 0.57 39.0 2.75e-01 70.7% 28.8%
1wloA00 3.90.1010.10 Alpha Beta › Alpha-Beta Complex › Sufe protein. Chain: A › 0.57 42.0 3.79e-01 76.8% 64.0%
1ln1A00 3.30.530.20 Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain 0.56 43.0 3.47e-01 82.8% 92.6%
6mlyB01 2.115.10.20 Mainly Beta › 5 Propeller › Tachylectin-2; Chain A › Glycosyl hydrolase domain; family 43 0.56 39.0 2.93e-01 73.7% 40.8%
1sil000 2.120.10.10 Mainly Beta › 6 Propeller › Neuraminidase › 0.55 44.0 3.04e-01 88.9% 73.2%
2ghsA00 2.120.10.30 Mainly Beta › 6 Propeller › Neuraminidase › TolB, C-terminal domain 0.55 41.0 2.97e-01 79.8% 30.8%
3h27A00 3.50.50.100 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › 0.55 43.0 2.85e-01 84.8% 52.4%
1b9vA00 2.120.10.10 Mainly Beta › 6 Propeller › Neuraminidase › 0.55 39.0 2.68e-01 76.8% 26.2%
1tyeA00 2.130.10.130 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › Integrin alpha, N-terminal 0.55 45.0 3.02e-01 94.9% 74.1%
2nn6D00 3.30.230.70 Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S5; domain 2 › GHMP Kinase, N-terminal domain 0.54 42.0 3.24e-01 79.8% 53.2%
4ntqB00 3.30.2450.20 Alpha Beta › 2-Layer Sandwich › Secreted effector protein pipB2 fold › 0.54 39.0 3.50e-01 77.8% 62.8%
7obmA01 2.130.10.120 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › Prolyl oligopeptidase, N-terminal domain 0.53 41.0 2.90e-01 82.8% 39.3%
5c0pA00 2.115.10.20 Mainly Beta › 5 Propeller › Tachylectin-2; Chain A › Glycosyl hydrolase domain; family 43 0.53 37.0 2.76e-01 72.7% 38.0%
2yzyA00 2.50.20.10 Mainly Beta › Clam › outer membrane lipoprotein receptor (LolB), chain A › Lipoprotein localisation LolA/LolB/LppX 0.53 37.0 3.17e-01 72.7% 78.5%
1inyA00 2.120.10.10 Mainly Beta › 6 Propeller › Neuraminidase › 0.53 40.0 2.71e-01 80.8% 51.3%
4u6bA00 2.115.10.20 Mainly Beta › 5 Propeller › Tachylectin-2; Chain A › Glycosyl hydrolase domain; family 43 0.52 41.0 2.88e-01 84.8% 55.7%
3aonA00 1.10.287.3240 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › 0.52 37.0 3.04e-01 73.7% 94.7%
3g4eA00 2.120.10.30 Mainly Beta › 6 Propeller › Neuraminidase › TolB, C-terminal domain 0.52 38.0 2.81e-01 79.8% 31.3%
1pvgA01 3.30.565.10 Alpha Beta › 2-Layer Sandwich › Heat Shock Protein 90 › Histidine kinase-like ATPase, C-terminal domain 0.52 37.0 2.83e-01 75.8% 39.8%
3ly7A01 3.40.50.11830 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 0.50 39.0 3.43e-01 85.9% 80.7%
4chmB00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.50 34.0 3.23e-01 70.7% 77.4%
ECOD (45)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4225063 3840.1.1.2 a+b two layers › Bacterial conjugation factor PsiB › Bacterial conjugation factor PsiB › Bacterial conjugation factor PsiB › PerB 0.69 46.0 4.51e-01 71.7% 61.8%
3228242 4210.1.1.1 a+b two layers › WGR domain › WGR domain › WGR domain › WGR 0.68 47.0 4.72e-01 71.7% 93.0%
3487711 5.1.4.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.62 43.0 2.98e-01 70.7% 26.8%
3257847 4026.1.1.0 a+b three layers › a+b domain in Rap/Ran-GAP (Pfam 02145) › a+b domain in Rap/Ran-GAP (Pfam 02145) › a+b domain in Rap/Ran-GAP (Pfam 02145) 0.62 45.0 4.01e-01 75.8% 67.9%
3277475 223.2.1.0 a+b three layers › Profilin-like › profilin-like › profilin-like 0.62 48.0 4.39e-01 83.8% 82.1%
3973387 5.1.5.74 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed › DUF3686 0.61 46.0 3.27e-01 80.8% 40.6%
3505993 5.1.4.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.61 42.0 2.89e-01 70.7% 23.2%
3789432 5.1.4.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.61 45.0 2.88e-01 77.8% 26.1%
3225189 5.1.4.369 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › EMC1_C, Beta-prop_EMC1_N 0.61 46.0 2.72e-01 80.8% 25.8%
3941428 330.10.1.1 a+b two layers › dsRBD-like › Heterocyclase TruD C-terminal domain › Heterocyclase TruD C-terminal domain › YcaO 0.60 42.0 3.76e-01 71.7% 61.4%
5010861 5.1.4.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.60 47.0 3.13e-01 82.8% 25.2%
3719326 5.1.4.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.60 42.0 2.80e-01 72.7% 41.3%
1693983 5.1.4.64 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › YNCE 0.60 41.0 2.83e-01 70.7% 29.3%
3970165 330.10.1.0 a+b two layers › dsRBD-like › Heterocyclase TruD C-terminal domain › Heterocyclase TruD C-terminal domain 0.59 41.0 3.74e-01 71.7% 62.2%
3746407 5.1.5.64 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed › DCAF17 0.59 44.0 2.89e-01 78.8% 28.4%
4847379 5.1.5.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed 0.59 42.0 2.97e-01 73.7% 35.3%
3649825 5.1.3.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed 0.59 44.0 3.07e-01 87.9% 22.6%
3191562 5.1.4.229 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Beta-prop_EMC1_N 0.58 41.0 2.67e-01 71.7% 20.9%
4967370 330.4.1.1 a+b two layers › dsRBD-like › Porphobilinogen deaminase (hydroxymethylbilane synthase), C-terminal domain › Porphobilinogen deaminase (hydroxymethylbilane synthase), C-terminal domain › Porphobil_deamC 0.58 41.0 4.32e-01 74.7% 93.3%
3782775 330.1.1.1 a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like › dsrm 0.58 40.0 4.13e-01 70.7% 86.7%
5032832 5.1.5.11 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed › PQQ_2 0.58 40.0 2.66e-01 72.7% 21.0%
3193923 5.1.4.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.57 48.0 3.15e-01 91.9% 56.9%
3275116 5.1.4.6 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40,ANAPC4_WD40 0.57 40.0 2.82e-01 71.7% 27.5%
3383121 5.1.3.118 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › FBA_3 0.57 40.0 2.85e-01 73.7% 32.1%
3499652 5.1.5.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed 0.56 40.0 2.89e-01 73.7% 30.0%
3496018 5.1.4.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.56 49.0 3.19e-01 99.0% 77.9%
3575058 5.1.5.169 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed › ELYS-bb 0.56 40.0 2.92e-01 73.7% 38.6%
3442039 5.1.4.15 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › RPE65 0.56 39.0 2.87e-01 72.7% 26.3%
3993098 5.1.5.52 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed › EMC1_C 0.56 46.0 2.84e-01 89.9% 29.6%
None 0.55 44.0 3.83e-01 86.9% 62.1%
4027923 5.1.4.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.54 42.0 2.58e-01 81.8% 23.3%
None 0.54 39.0 2.37e-01 77.8% 17.4%
5080576 633.23.1.0 alpha bundles › Bromodomain-like › Claudin › Claudin 0.54 40.0 3.16e-01 78.8% 77.0%
3645846 5.1.4.383 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › VPS11_N 0.53 40.0 2.77e-01 79.8% 27.0%
3520764 5.1.4.151 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › BCAS3_WD40 0.53 40.0 2.52e-01 80.8% 83.3%
3838900 2008.1.1.152 a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › DUF2130 0.53 36.0 3.14e-01 73.7% 44.5%
5059043 5.1.4.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.53 38.0 2.65e-01 76.8% 26.4%
5034929 633.23.1.0 alpha bundles › Bromodomain-like › Claudin › Claudin 0.52 46.0 3.61e-01 100.0% 72.0%
4182460 5.1.4.1 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40 0.51 45.0 2.62e-01 99.0% 51.6%
3994977 5.1.3.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed 0.51 40.0 2.88e-01 86.9% 70.0%
3502608 5.1.4.1 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40 0.51 41.0 2.77e-01 86.9% 87.6%
3789605 225.1.1.0 a+b two layers › ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase-like › ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase › ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 0.51 36.0 2.80e-01 75.8% 40.0%
3316791 5.1.5.1 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed › WD40 0.50 43.0 2.94e-01 92.9% 87.1%
3939257 331.3.1.3 a+b two layers › TBP-like › Bet v1-like › Bet v1-like › START 0.50 44.0 3.30e-01 100.0% 90.0%
3206926 5.1.4.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.50 35.0 2.66e-01 76.8% 26.4%
D2 high residues 110-181
PDB
CATH (19)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
4dq2A03 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.67 42.0 4.88e-01 100.0% 95.7%
6c6sD02 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.66 43.0 4.67e-01 100.0% 80.0%
2kdsA01 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.65 43.0 4.06e-01 100.0% 57.0%
3pieB05 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.60 43.0 4.54e-01 100.0% 84.4%
1pcfA00 2.30.31.10 Mainly Beta › Roll › Transcriptional Co-activator pc4; Chain A › Transcriptional Coactivator Pc4; Chain A 0.60 35.0 3.66e-01 73.6% 62.1%
3c0tA00 2.40.320.10 Mainly Beta › Beta Barrel › Hypothetical Protein Pfu-838710-001 › Hypothetical Protein Pfu-838710-001 0.58 48.0 3.52e-01 93.1% 84.6%
5zwzA01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.58 43.0 4.36e-01 100.0% 80.0%
1pbyA02 2.40.128.120 Mainly Beta › Beta Barrel › Lipocalin › Quinohemoprotein amine dehydrogenase alpha subunit, domain 2 0.56 47.0 4.19e-01 100.0% 65.1%
2retA00 3.30.1300.30 Alpha Beta › 2-Layer Sandwich › Pantoate--beta-alanine Ligase; Chain: A,domain 2 › GSPII I/J protein-like 0.56 37.0 3.58e-01 77.8% 58.3%
4jglA00 2.40.128.530 Mainly Beta › Beta Barrel › Lipocalin › 0.56 47.0 3.83e-01 100.0% 60.5%
2cm4A00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.55 48.0 3.87e-01 100.0% 54.5%
3kreA01 3.30.200.20 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 0.54 40.0 3.63e-01 79.2% 79.4%
4ifdI02 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.53 44.0 3.61e-01 94.4% 68.1%
3l0qA01 3.30.420.40 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain 0.53 46.0 2.97e-01 100.0% 90.6%
6gbuD00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.53 40.0 4.19e-01 100.0% 92.2%
1yy3A02 2.40.10.240 Mainly Beta › Beta Barrel › Thrombin, subunit H › QueA-like 0.52 41.0 3.72e-01 86.1% 77.8%
3jtyB01 2.40.160.10 Mainly Beta › Beta Barrel › Porin › Porin 0.51 41.0 2.65e-01 90.3% 59.4%
2xklA00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.51 43.0 3.52e-01 100.0% 60.4%
1gteA04 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.50 41.0 3.39e-01 98.6% 96.7%
ECOD (27)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3577505 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.69 43.0 4.05e-01 100.0% 52.9%
3866571 4.1.1.34 beta barrels › SH3 › SH3 › SH3 › MBT 0.67 47.0 2.87e-01 100.0% 11.9%
3926207 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.66 44.0 5.06e-01 100.0% 94.3%
3784140 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.64 44.0 4.96e-01 100.0% 92.7%
3649311 9.2.1.4 beta barrels › Lipocalins/Streptavidin › Avidin/Streptavidin › Avidin/Streptavidin › DUF2921_N 0.62 53.0 4.08e-01 100.0% 69.4%
3685970 9.1.1.0 beta barrels › Lipocalins/Streptavidin › Lipocalins › Lipocalins 0.60 54.0 4.07e-01 100.0% 93.5%
3938415 4.1.1.1 beta barrels › SH3 › SH3 › SH3 › SH3_1 0.60 47.0 4.95e-01 100.0% 93.8%
4978676 295.1.1.1 a+b two layers › ssDNA-binding transcriptional regulator domain-like › ssDNA-binding transcriptional regulator domain › ssDNA-binding transcriptional regulator domain › PC4 0.59 39.0 3.77e-01 77.8% 60.0%
3828371 4.1.1.42 beta barrels › SH3 › SH3 › SH3 › Agenet 0.59 44.0 4.17e-01 100.0% 67.1%
3664869 4.1.1.158 beta barrels › SH3 › SH3 › SH3 › DUF3444 0.58 51.0 3.65e-01 100.0% 33.6%
3706998 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.58 37.0 3.93e-01 100.0% 76.7%
3705404 3291.1.1.0 alpha bundles › Charged multivesicular body protein 3 (CHMP3)-related › Charged multivesicular body protein 3 (CHMP3)-related › Charged multivesicular body protein 3 (CHMP3)-related 0.57 50.0 3.44e-01 100.0% 74.5%
3719639 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.56 49.0 4.12e-01 100.0% 67.2%
3713672 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.55 47.0 3.99e-01 100.0% 58.3%
3830083 4.1.1.12 beta barrels › SH3 › SH3 › SH3 › PWWP 0.55 36.0 3.01e-01 100.0% 36.3%
3434094 4.1.1.158 beta barrels › SH3 › SH3 › SH3 › DUF3444 0.55 48.0 4.40e-01 100.0% 75.8%
3713571 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.54 45.0 4.06e-01 100.0% 64.8%
3707345 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.54 47.0 4.45e-01 100.0% 92.2%
3887433 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.54 48.0 4.10e-01 100.0% 97.4%
3877687 220.1.1.1 beta barrels › PH domain-like › PH domain-like › PH domain-like › PH 0.53 46.0 3.87e-01 100.0% 70.8%
3967197 1.1.7.0 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.53 31.0 3.16e-01 100.0% 57.1%
3702362 63.1.1.3 beta barrels › Mannose 6-phosphate receptor domain › Mannose 6-phosphate receptor domain › Mannose 6-phosphate receptor domain › PRKCSH 0.52 44.0 3.61e-01 100.0% 82.1%
3718969 148.1.3.0 alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain 0.52 45.0 3.43e-01 100.0% 70.9%
3970000 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.51 38.0 3.47e-01 81.9% 86.0%
5024219 5.1.3.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed 0.51 41.0 2.60e-01 94.4% 26.8%
3479782 2003.1.2.0 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain 0.50 43.0 3.27e-01 100.0% 96.3%
4954883 2003.1.5.82 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › Methyltransf_31 0.50 39.0 2.74e-01 87.5% 33.2%