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ENA-CEUD01013717-CEUD01013717-1_prodigal-single.1__X__X__00170

Bact-Vir

ENA-CEUD01013717-CEUD01013717-1_prodigal-single.1__X__X__00170

Identity

Kingdom:
phage

Quality

74.3 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 12-102
PDB
Domain cluster: representative
CATH (50)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2yfaA02 1.20.1440.210 Mainly Alpha › Up-down Bundle › de novo design (two linked rop proteins) › 0.82 61.0 5.53e-01 76.9% 63.8%
2odmA00 1.10.287.750 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › SO2669-like 0.81 60.0 6.46e-01 78.0% 89.9%
4kb2A01 1.10.132.20 Mainly Alpha › Orthogonal Bundle › Topoisomerase I; Chain A, domain 4 › Ribosome-recycling factor 0.79 58.0 5.44e-01 76.9% 87.2%
4oydB00 1.10.132.20 Mainly Alpha › Orthogonal Bundle › Topoisomerase I; Chain A, domain 4 › Ribosome-recycling factor 0.79 58.0 5.34e-01 78.0% 87.2%
4jgiA01 1.10.1240.10 Mainly Alpha › Orthogonal Bundle › Methyltransferase, Methionine Synthase (B12-binding Domains); Chain A, domain 1 › Methionine synthase domain 0.78 62.0 6.61e-01 87.9% 96.2%
6vudA01 1.10.132.20 Mainly Alpha › Orthogonal Bundle › Topoisomerase I; Chain A, domain 4 › Ribosome-recycling factor 0.78 56.0 5.32e-01 75.8% 86.2%
1dd5A01 1.10.132.20 Mainly Alpha › Orthogonal Bundle › Topoisomerase I; Chain A, domain 4 › Ribosome-recycling factor 0.77 56.0 5.27e-01 75.8% 86.2%
2xzmO02 1.10.287.10 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › S15/NS1, RNA-binding 0.76 54.0 6.07e-01 86.8% 95.7%
2uubT00 1.20.58.110 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Ribosomal protein S20 0.76 54.0 5.24e-01 79.1% 67.7%
2yfaB01 1.20.1440.210 Mainly Alpha › Up-down Bundle › de novo design (two linked rop proteins) › 0.75 63.0 5.71e-01 89.0% 84.0%
1t72A01 1.20.58.220 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Phosphate transport system protein phou homolog 2; domain 2 0.75 56.0 5.16e-01 79.1% 76.9%
2rldA00 1.20.1440.60 Mainly Alpha › Up-down Bundle › de novo design (two linked rop proteins) › 23S rRNA-intervening sequence 0.74 54.0 4.99e-01 75.8% 63.2%
5j1gA00 1.20.58.60 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.73 55.0 4.03e-01 79.1% 46.5%
1cunA01 1.20.58.60 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.72 54.0 5.27e-01 79.1% 93.1%
1vctA01 1.20.58.220 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Phosphate transport system protein phou homolog 2; domain 2 0.71 56.0 5.30e-01 84.6% 92.7%
3llwD00 1.10.600.10 Mainly Alpha › Orthogonal Bundle › Farnesyl Diphosphate Synthase › Farnesyl Diphosphate Synthase 0.71 64.0 4.47e-01 100.0% 65.7%
1j5wA02 1.20.58.180 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Class II aaRS and biotin synthetases; domain 2 0.71 50.0 5.36e-01 79.1% 87.0%
2lm9A00 1.20.58.970 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.71 51.0 5.04e-01 75.8% 90.6%
3h36A00 1.10.10.400 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Polyribonucleotide nucleotidyltransferase, RNA-binding domain 0.70 52.0 5.52e-01 78.0% 92.3%
4dlqA02 1.25.40.610 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › 0.70 58.0 5.79e-01 90.1% 89.5%
2ehwA00 6.10.140.1220 Special › Helix non-globular › Helix Hairpins › 0.70 49.0 4.52e-01 72.5% 80.0%
7xcnM01 1.10.1240.10 Mainly Alpha › Orthogonal Bundle › Methyltransferase, Methionine Synthase (B12-binding Domains); Chain A, domain 1 › Methionine synthase domain 0.70 56.0 6.00e-01 89.0% 100.0%
4od4A02 1.20.120.1780 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › UbiA prenyltransferase 0.70 57.0 5.20e-01 87.9% 87.4%
1w99A01 1.20.190.10 Mainly Alpha › Up-down Bundle › Delta-Endotoxin; domain 1 › Pesticidal crystal protein, N-terminal domain 0.69 57.0 4.67e-01 91.2% 65.9%
3n2oA03 1.20.58.930 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.69 56.0 5.52e-01 86.8% 94.8%
1quuA01 1.20.58.60 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.68 50.0 4.52e-01 78.0% 76.2%
3uumA00 1.20.58.60 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.68 51.0 4.62e-01 79.1% 81.1%
3tm8B00 1.10.3210.10 Mainly Alpha › Orthogonal Bundle › Hypothetical protein af1432 › Hypothetical protein af1432 0.68 60.0 4.11e-01 96.7% 42.0%
1vs5O00 1.10.287.10 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › S15/NS1, RNA-binding 0.68 49.0 5.02e-01 75.8% 100.0%
4kp3C00 1.20.58.1770 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.67 43.0 4.57e-01 89.0% 74.1%
3zc0D00 1.20.58.2140 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.66 52.0 4.23e-01 87.9% 50.3%
2qr4A01 1.20.140.70 Mainly Alpha › Up-down Bundle › Butyryl-CoA Dehydrogenase, subunit A; domain 3 › Oligopeptidase f, N-terminal domain 0.66 55.0 4.63e-01 92.3% 99.4%
1s35A02 1.20.58.60 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.66 49.0 4.62e-01 79.1% 86.4%
1yxrA01 1.20.58.80 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Phosphotransferase system, lactose/cellobiose-type IIA subunit 0.65 46.0 4.99e-01 74.7% 89.2%
3f4mA00 1.20.1440.160 Mainly Alpha › Up-down Bundle › de novo design (two linked rop proteins) › Tumor necrosis factor alpha-induced protein 8-like 0.65 52.0 4.43e-01 87.9% 58.4%
3besR03 6.10.140.1480 Special › Helix non-globular › Helix Hairpins › 0.65 39.0 4.68e-01 92.3% 96.4%
2bvlA01 1.20.58.1190 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.65 47.0 4.87e-01 84.6% 81.4%
3pjaJ01 1.20.58.190 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Translin; domain 1 0.65 51.0 4.61e-01 86.8% 80.2%
5tqbB01 1.25.40.10 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain 0.65 54.0 3.67e-01 91.2% 49.7%
3am6A00 1.20.1070.10 Mainly Alpha › Up-down Bundle › Rhopdopsin 7-helix transmembrane proteins › Rhodopsin 7-helix transmembrane proteins 0.65 53.0 3.97e-01 89.0% 43.8%
2i2xB01 1.10.1240.10 Mainly Alpha › Orthogonal Bundle › Methyltransferase, Methionine Synthase (B12-binding Domains); Chain A, domain 1 › Methionine synthase domain 0.65 50.0 4.91e-01 85.7% 76.0%
2xs1A01 1.25.40.280 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › alix/aip1 like domains 0.64 52.0 3.51e-01 89.0% 66.1%
2v6yA00 1.20.58.80 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Phosphotransferase system, lactose/cellobiose-type IIA subunit 0.64 45.0 4.82e-01 78.0% 89.3%
4u7iA00 1.20.58.80 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Phosphotransferase system, lactose/cellobiose-type IIA subunit 0.64 46.0 4.64e-01 76.9% 82.8%
1cnt200 1.20.1250.10 Mainly Alpha › Up-down Bundle › Growth Hormone; Chain: A; › 0.64 48.0 4.18e-01 78.0% 55.4%
1d2mA03 6.10.140.240 Special › Helix non-globular › Helix Hairpins › 0.63 40.0 4.55e-01 72.5% 87.9%
1q6aA00 1.10.1240.30 Mainly Alpha › Orthogonal Bundle › Methyltransferase, Methionine Synthase (B12-binding Domains); Chain A, domain 1 › KaiA/RbsU domain 0.62 53.0 5.06e-01 94.5% 88.8%
6d5xA00 1.20.1200.10 Mainly Alpha › Up-down Bundle › Hypothetical Protein Ta1238; Chain: A; › Cobalamin adenosyltransferase-like 0.61 47.0 4.03e-01 83.5% 91.4%
2gtvX00 1.20.59.10 Mainly Alpha › Up-down Bundle › Chorismate Mutase Domain, subunit A › Chorismate mutase 0.60 50.0 4.88e-01 94.5% 95.2%
3thxB03 1.10.1420.10 Mainly Alpha › Orthogonal Bundle › MutS, DNA mismatch repair protein; Chain A, domain 3 › 0.58 44.0 3.54e-01 81.3% 67.4%
ECOD (57)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4247950 4994.1.1.1 alpha duplicates or obligate multimers › EF2458-like › EF2458-like › EF2458-like › DUF1507 0.87 65.0 6.45e-01 78.0% 81.1%
4524825 604.9.1.1 alpha bundles › Spectrin repeat-like › Ribosomal protein S20 › Ribosomal protein S20 › Ribosomal_S20p 0.86 65.0 6.44e-01 79.1% 75.8%
3306390 604.9.1.1 alpha bundles › Spectrin repeat-like › Ribosomal protein S20 › Ribosomal protein S20 › Ribosomal_S20p 0.84 64.0 6.08e-01 79.1% 72.4%
3957298 604.9.1.1 alpha bundles › Spectrin repeat-like › Ribosomal protein S20 › Ribosomal protein S20 › Ribosomal_S20p 0.84 58.0 5.93e-01 79.1% 72.2%
3669139 109.4.1.359 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › Exo70_C 0.81 69.0 4.09e-01 91.2% 19.2%
4290271 604.9.1.1 alpha bundles › Spectrin repeat-like › Ribosomal protein S20 › Ribosomal protein S20 › Ribosomal_S20p 0.79 56.0 5.72e-01 79.1% 74.4%
4137468 310.2.1.1 a+b two layers › RRF/tRNA synthetase additional domain-like › Ribosome recycling factor, RRF › Ribosome recycling factor, RRF › RRF 0.79 58.0 4.53e-01 76.9% 91.9%
1711732 601.2.1.7 alpha bundles › Four-helical up-and-down bundle › Cytochromes › Cytochromes › HBM 0.79 60.0 5.46e-01 80.2% 66.7%
2597170 310.2.1.1 a+b two layers › RRF/tRNA synthetase additional domain-like › Ribosome recycling factor, RRF › Ribosome recycling factor, RRF › RRF 0.78 57.0 4.48e-01 76.9% 91.9%
4277373 4994.1.1.1 alpha duplicates or obligate multimers › EF2458-like › EF2458-like › EF2458-like › DUF1507 0.78 59.0 5.91e-01 80.2% 83.9%
3648733 310.2.1.1 a+b two layers › RRF/tRNA synthetase additional domain-like › Ribosome recycling factor, RRF › Ribosome recycling factor, RRF › RRF 0.77 56.0 4.27e-01 76.9% 90.0%
54292 633.10.1.0 alpha bundles › Bromodomain-like › IVS-encoded protein-like › IVS-encoded protein-like 0.74 54.0 5.00e-01 75.8% 64.3%
4362035 310.2.1.1 a+b two layers › RRF/tRNA synthetase additional domain-like › Ribosome recycling factor, RRF › Ribosome recycling factor, RRF › RRF 0.74 55.0 4.34e-01 78.0% 92.4%
3389546 604.1.1.1 alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat › Spectrin 0.74 55.0 5.82e-01 78.0% 90.0%
5075806 4995.1.1.1 alpha arrays › Methionine synthase domain-like › Methionine synthase domain-like › Methionine synthase domain-like › B12-binding_2 0.74 54.0 5.69e-01 82.4% 86.3%
3706056 604.22.1.0 alpha bundles › Spectrin repeat-like › tubulin binding cofactor C N-terminal domain › tubulin binding cofactor C N-terminal domain 0.73 52.0 5.39e-01 78.0% 78.8%
3181390 109.4.1.189 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR_2 0.73 60.0 3.59e-01 90.1% 13.3%
3478235 633.23.1.0 alpha bundles › Bromodomain-like › Claudin › Claudin 0.72 54.0 4.81e-01 78.0% 60.9%
4940116 140.1.1.14 alpha bundles › Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases › Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases › Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases › tRNA-synt_1e 0.72 51.0 4.33e-01 75.8% 45.5%
54287 633.10.1.0 alpha bundles › Bromodomain-like › IVS-encoded protein-like › IVS-encoded protein-like 0.71 53.0 4.94e-01 79.1% 67.8%
3559718 604.1.1.1 alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat › Spectrin 0.71 53.0 5.01e-01 79.1% 86.4%
3846037 604.1.1.1 alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat › Spectrin 0.71 53.0 4.72e-01 79.1% 73.1%
1837845 109.4.1.147 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › EST1_DNA_bind 0.71 61.0 3.98e-01 94.5% 29.0%
4586684 604.1.1.0 alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat 0.71 53.0 4.66e-01 78.0% 71.5%
4399436 601.54.1.0 alpha bundles › Four-helical up-and-down bundle › low CO2-inducible protein LCI1 › low CO2-inducible protein LCI1 0.71 51.0 4.43e-01 75.8% 56.4%
4936976 633.10.1.2 alpha bundles › Bromodomain-like › IVS-encoded protein-like › IVS-encoded protein-like › Bbp7-like 0.70 54.0 5.13e-01 80.2% 72.4%
3576603 604.12.1.1 alpha bundles › Spectrin repeat-like › MIT domain › MIT domain › MIT 0.70 46.0 4.99e-01 72.5% 80.0%
3660 633.10.1.1 alpha bundles › Bromodomain-like › IVS-encoded protein-like › IVS-encoded protein-like › 23S_rRNA_IVP 0.70 53.0 4.97e-01 80.2% 66.4%
3487245 604.1.1.0 alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat 0.70 52.0 4.80e-01 78.0% 83.5%
4517375 604.1.1.1 alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat › Spectrin 0.70 52.0 4.92e-01 79.1% 83.6%
3469833 604.1.1.1 alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat › Spectrin 0.70 52.0 4.76e-01 79.1% 76.7%
3844817 604.1.1.1 alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat › Spectrin 0.69 52.0 4.50e-01 79.1% 68.6%
3943967 180.1.1.1 alpha bundles › Acid phosphatase/Vanadium-dependent haloperoxidase › Acid phosphatase/Vanadium-dependent haloperoxidase › Acid phosphatase/Vanadium-dependent haloperoxidase › PAP2 0.69 53.0 4.24e-01 82.4% 77.8%
3594772 604.12.1.0 alpha bundles › Spectrin repeat-like › MIT domain › MIT domain 0.69 48.0 4.94e-01 74.7% 76.5%
4416227 604.34.1.1 alpha bundles › Spectrin repeat-like › Helical bundle domain in arginine decarboxylase › Helical bundle domain in arginine decarboxylase › Arg_decarb_HB 0.69 56.0 5.45e-01 86.8% 91.0%
3883667 604.1.1.0 alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat 0.69 50.0 4.81e-01 76.9% 96.2%
3264196 5067.1.1.13 alpha bundles › Multidrug efflux transporter AcrB transmembrane domain › Multidrug efflux transporter AcrB transmembrane domain › Multidrug efflux transporter AcrB transmembrane domain › ALMT 0.69 54.0 4.45e-01 84.6% 48.5%
3987006 5086.1.1.93 alpha bundles › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins › HH_EMRA 0.68 49.0 4.22e-01 74.7% 100.0%
3748412 604.1.1.92 alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat › SR_desmoplakin_3 0.68 51.0 4.71e-01 79.1% 90.4%
3481781 604.12.1.1 alpha bundles › Spectrin repeat-like › MIT domain › MIT domain › MIT 0.68 47.0 5.02e-01 76.9% 82.5%
4323909 101.11.1.1 alpha arrays › HTH › Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domain 3 › Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domain 3 › PNPase 0.68 50.0 5.01e-01 80.2% 77.9%
3749998 604.1.1.1 alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat › Spectrin 0.67 49.0 4.55e-01 78.0% 79.2%
3585899 604.1.1.1 alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat › Spectrin 0.67 49.0 4.67e-01 78.0% 83.6%
3574755 604.1.1.1 alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat › Spectrin 0.67 51.0 4.80e-01 81.3% 90.0%
3583440 604.1.1.1 alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat › Spectrin 0.67 50.0 4.58e-01 79.1% 79.2%
3935017 604.12.1.0 alpha bundles › Spectrin repeat-like › MIT domain › MIT domain 0.67 49.0 5.19e-01 79.1% 92.5%
3497645 604.1.1.1 alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat › Spectrin 0.67 50.0 5.24e-01 79.1% 91.3%
4998720 316.1.1.0 a+b three layers › Nucleotidyltransferase-like › Nucleotidyltransferase › Nucleotidyltransferase 0.66 55.0 3.94e-01 91.2% 47.4%
3754166 109.4.1.192 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › TPR_8 0.65 53.0 4.05e-01 89.0% 41.9%
4839189 192.29.1.0 alpha bundles › Long alpha-hairpin › bMERB domain (bivalent Mical/EHBP Rab binding) › bMERB domain (bivalent Mical/EHBP Rab binding) 0.65 53.0 4.88e-01 92.3% 85.2%
4970557 604.12.1.0 alpha bundles › Spectrin repeat-like › MIT domain › MIT domain 0.64 45.0 4.94e-01 79.1% 95.7%
3407072 604.12.1.0 alpha bundles › Spectrin repeat-like › MIT domain › MIT domain 0.64 46.0 4.88e-01 78.0% 88.7%
3926031 604.12.1.0 alpha bundles › Spectrin repeat-like › MIT domain › MIT domain 0.63 49.0 4.88e-01 85.7% 87.4%
3655413 109.2.1.7 alpha superhelices › Repetitive alpha hairpins › alpha/alpha toroid › alpha/alpha toroid › Terpene_synth 0.61 49.0 3.74e-01 87.9% 37.3%
3523907 604.1.1.92 alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat › SR_desmoplakin_3 0.60 46.0 4.11e-01 81.3% 78.4%
3921009 2004.1.1.0 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases 0.59 47.0 3.10e-01 89.0% 21.6%
3187407 633.10.1.4 alpha bundles › Bromodomain-like › IVS-encoded protein-like › IVS-encoded protein-like › DUF3429 0.59 46.0 3.76e-01 83.5% 53.5%
D2 medium residues 103-184
PDB