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ENA-CEUD01013717-CEUD01013717-1_prodigal-single.1__X__X__00190
Bact-VirENA-CEUD01013717-CEUD01013717-1_prodigal-single.1__X__X__00190
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 132-266
Domain cluster:
rep: OL964735.1__UJD20213.1__T73t3_264__00264__D612-751
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF26926.1 best | Phage_T4_rIIB | 97.6 | 1.10e-27 | 94.8% | 26.1% |
D2
high
residues 329-379_404-438
D3
medium
residues 3-108
Domain cluster:
rep: rifoxyd1_full_scaffold_5_prodigal-single.1__X__X__00496__D4-100
CATH (6)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 5hr9A02 | 3.30.210.10 | Alpha Beta › 2-Layer Sandwich › Beta Polymerase; domain 3 › DNA polymerase, thumb domain | 0.67 | 31.0 | 3.82e-01 | 70.8% | 68.1% |
| 4npsA02 | 2.40.50.140 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins | 0.63 | 30.0 | 3.84e-01 | 86.8% | 79.3% |
| 1ybyA02 | 2.40.50.140 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins | 0.59 | 30.0 | 3.72e-01 | 88.7% | 79.7% |
| 1dq3A02 | 3.30.160.90 | Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › | 0.56 | 32.0 | 3.69e-01 | 79.2% | 78.9% |
| 3go5A01 | 2.40.50.330 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › | 0.54 | 30.0 | 3.58e-01 | 71.7% | 81.7% |
| 4gu4A01 | 2.10.25.20 | Mainly Beta › Ribbon › Laminin › reovirus attachment protein sigma1; domain 1 | 0.52 | 22.0 | 3.10e-01 | 91.5% | 88.4% |
ECOD (6)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 5010030 | 211.1.1.0 ↗ | a+b two layers › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase | 0.62 | 20.0 | 3.24e-01 | 71.7% | 75.0% |
| 4995140 | 2484.1.1.124 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › OrfB_IS605 | 0.56 | 28.0 | 2.60e-01 | 70.8% | 33.8% |
| 3589473 | 4.8.1.0 ↗ | beta barrels › SH3 › Chromo domain-like › Chromo domain-like | 0.53 | 27.0 | 3.10e-01 | 92.5% | 63.7% |
| 5060972 | 327.11.2.13 ↗ | a+b two layers › Alpha-lytic protease prodomain-like › KH-domains › Eukaryotic type KH-domain (KH-domain type I) › KH_PNO1_2nd | 0.53 | 34.0 | 3.55e-01 | 84.0% | 70.0% |
| 5001329 | 327.11.2.13 ↗ | a+b two layers › Alpha-lytic protease prodomain-like › KH-domains › Eukaryotic type KH-domain (KH-domain type I) › KH_PNO1_2nd | 0.52 | 34.0 | 3.71e-01 | 83.0% | 82.4% |
| None | — | 0.51 | 42.0 | 2.58e-01 | 92.5% | 34.6% |