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ENA-CEUD01013717-CEUD01013717-1_prodigal-single.1__X__X__00317

Bact-Vir

ENA-CEUD01013717-CEUD01013717-1_prodigal-single.1__X__X__00317

Identity

Kingdom:
phage

Quality

87.6 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 1-76
PDB
Domain cluster: representative
CATH (1)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1edhA01 2.60.40.60 Mainly Beta › Sandwich › Immunoglobulin-like › Cadherins 0.50 37.0 3.49e-01 81.6% 93.9%
ECOD (2)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
5060704 371.1.1.5 few secondary structure elements › Phospholipase A2, PLA2 › Phospholipase A2, PLA2 › Phospholipase A2, PLA2 › DUF1353 0.88 57.0 4.91e-01 86.8% 45.5%
3838528 319.3.1.0 beta sandwiches › HSP20-like › B2 domain of PilQ › B2 domain of PilQ 0.58 41.0 3.62e-01 73.7% 80.0%
D2 medium residues 77-151
PDB
Domain cluster: representative
CATH (43)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1e5rB02 1.10.1720.10 Mainly Alpha › Orthogonal Bundle › Proline Oxidase; Chain: A, Domain 2 › L-proline 3-hydroxylase, C-terminal domain 0.67 49.0 4.74e-01 82.7% 69.0%
3e3vA03 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.66 42.0 4.73e-01 77.3% 87.5%
1wkbA03 1.10.730.10 Mainly Alpha › Orthogonal Bundle › Isoleucyl-tRNA Synthetase; Domain 1 › Isoleucyl-tRNA Synthetase; Domain 1 0.65 49.0 4.25e-01 82.7% 70.2%
1x8zB00 1.20.140.40 Mainly Alpha › Up-down Bundle › Butyryl-CoA Dehydrogenase, subunit A; domain 3 › Invertase/pectin methylesterase inhibitor family protein 0.64 48.0 3.91e-01 81.3% 58.5%
2jbwA01 1.20.1440.110 Mainly Alpha › Up-down Bundle › de novo design (two linked rop proteins) › acylaminoacyl peptidase 0.64 50.0 4.51e-01 85.3% 66.0%
2yb5F01 1.20.1280.250 Mainly Alpha › Up-down Bundle › Monooxygenase › 0.64 49.0 4.75e-01 94.7% 74.4%
5tqbB01 1.25.40.10 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain 0.63 48.0 3.21e-01 85.3% 32.2%
2hsbA00 1.20.120.330 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Nucleotidyltransferases domain 2 0.63 47.0 4.00e-01 81.3% 90.5%
2v6yA00 1.20.58.80 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Phosphotransferase system, lactose/cellobiose-type IIA subunit 0.62 48.0 4.84e-01 84.0% 88.0%
2yevA03 1.20.120.80 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Cytochrome c oxidase, subunit III, four-helix bundle 0.62 52.0 3.96e-01 93.3% 63.0%
1j5wA02 1.20.58.180 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Class II aaRS and biotin synthetases; domain 2 0.62 45.0 4.52e-01 78.7% 80.5%
2pmrA00 1.20.1270.90 Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › AF1782-like 0.62 42.0 4.19e-01 72.0% 68.4%
4g1tA01 1.25.40.10 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain 0.61 44.0 3.82e-01 81.3% 47.2%
2crbA00 1.20.58.80 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Phosphotransferase system, lactose/cellobiose-type IIA subunit 0.61 48.0 4.50e-01 88.0% 80.4%
2vkjA00 1.20.58.2030 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.61 42.0 3.83e-01 85.3% 51.9%
3fnbA01 1.20.1440.110 Mainly Alpha › Up-down Bundle › de novo design (two linked rop proteins) › acylaminoacyl peptidase 0.61 47.0 4.13e-01 84.0% 63.2%
4agsB04 1.20.1050.10 Mainly Alpha › Up-down Bundle › Glutathione S-transferase Yfyf (Class Pi); Chain A, domain 2 › 0.60 49.0 4.07e-01 89.3% 92.5%
3nbxX03 1.20.58.1510 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.59 45.0 4.12e-01 82.7% 86.1%
3t57A02 1.20.1180.10 Mainly Alpha › Up-down Bundle › Udp N-acetylglucosamine O-acyltransferase; Domain 2 › Udp N-acetylglucosamine O-acyltransferase, C-terminal domain 0.59 46.0 4.63e-01 94.7% 85.3%
2zueA03 1.10.730.10 Mainly Alpha › Orthogonal Bundle › Isoleucyl-tRNA Synthetase; Domain 1 › Isoleucyl-tRNA Synthetase; Domain 1 0.59 44.0 3.87e-01 82.7% 67.2%
3qc1A01 1.25.40.540 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › TAP42-like family 0.59 45.0 3.67e-01 85.3% 50.3%
1f7uA02 1.10.730.10 Mainly Alpha › Orthogonal Bundle › Isoleucyl-tRNA Synthetase; Domain 1 › Isoleucyl-tRNA Synthetase; Domain 1 0.58 44.0 3.81e-01 84.0% 65.6%
2nr4A02 1.20.58.290 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Hypothetical membrane protein ta0354_69_121. 0.58 41.0 4.45e-01 84.0% 100.0%
1gu9C00 1.20.1290.10 Mainly Alpha › Up-down Bundle › AhpD-like › AhpD-like 0.58 42.0 3.30e-01 77.3% 59.5%
2m63A00 1.25.40.780 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › 0.58 43.0 3.49e-01 85.3% 39.5%
3ddhA02 1.10.150.240 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Putative phosphatase; domain 2 0.58 45.0 4.39e-01 84.0% 81.5%
1iq0A03 1.10.730.10 Mainly Alpha › Orthogonal Bundle › Isoleucyl-tRNA Synthetase; Domain 1 › Isoleucyl-tRNA Synthetase; Domain 1 0.57 43.0 3.80e-01 82.7% 74.1%
1sr2A00 1.20.120.160 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › HPT domain 0.57 46.0 4.07e-01 90.7% 65.5%
2mpcA00 1.10.533.10 Mainly Alpha › Orthogonal Bundle › Death Domain, Fas › Death Domain, Fas 0.57 43.0 4.08e-01 81.3% 84.4%
4u7iA00 1.20.58.80 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Phosphotransferase system, lactose/cellobiose-type IIA subunit 0.57 44.0 4.16e-01 85.3% 88.2%
3dzaA01 1.20.120.1940 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › YfdX protein domain 0.56 48.0 4.25e-01 98.7% 87.2%
2do9A01 1.10.533.10 Mainly Alpha › Orthogonal Bundle › Death Domain, Fas › Death Domain, Fas 0.56 41.0 4.02e-01 78.7% 83.3%
4me2A00 1.25.40.10 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain 0.56 41.0 3.17e-01 81.3% 51.5%
1j30A00 1.20.1260.10 Mainly Alpha › Up-down Bundle › Ferritin › Ferritin, core subunit, four-helix bundle 0.54 43.0 3.57e-01 88.0% 83.7%
4hhxA00 1.20.81.30 Mainly Alpha › Up-down Bundle › Receptor-associated Protein › Type II secretion system (T2SS), domain F 0.54 45.0 4.10e-01 96.0% 76.0%
2katA00 1.25.40.10 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain 0.53 42.0 3.68e-01 86.7% 75.7%
3u8vA00 1.20.120.660 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › IL-4 antagonist (De novo design) like domain 0.53 43.0 4.18e-01 90.7% 86.7%
5nl6A02 1.20.58.60 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.53 43.0 3.86e-01 90.7% 91.7%
3frrA00 1.20.1260.60 Mainly Alpha › Up-down Bundle › Ferritin › Vacuolar protein sorting-associated protein Ist1 0.53 41.0 3.13e-01 86.7% 84.4%
7c1iA01 1.20.120.160 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › HPT domain 0.52 44.0 4.03e-01 96.0% 73.0%
1zeeA01 1.20.58.600 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.52 38.0 3.38e-01 80.0% 56.8%
3ma5A00 1.25.40.10 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain 0.50 39.0 3.72e-01 86.7% 95.6%
3iqtA01 1.20.120.160 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › HPT domain 0.50 41.0 3.69e-01 97.3% 83.3%
ECOD (53)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3384200 109.4.1.0 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.72 45.0 3.70e-01 78.7% 34.8%
3379390 109.4.1.1267 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR, PPR_2, DYW_deaminase, E_motif 0.70 46.0 2.84e-01 78.7% 11.4%
3457719 109.4.1.1262 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR, PPR_1, PPR_2, PPR_long 0.68 46.0 2.75e-01 80.0% 9.5%
5002688 109.4.1.186 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › ANAPC3 0.68 49.0 3.41e-01 76.0% 27.9%
3814765 109.4.1.1336 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR_1, PPR_2, PPR_3 0.67 44.0 3.62e-01 77.3% 35.7%
5050919 604.1.1.0 alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat 0.67 53.0 4.72e-01 88.0% 94.5%
3308046 109.4.1.883 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR+PPR_2 0.66 44.0 3.98e-01 78.7% 48.6%
3306457 109.4.1.1282 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR, PPR_1, PPR_2, TPR_24 0.66 45.0 3.94e-01 77.3% 46.1%
3834601 109.4.1.189 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR_2 0.65 43.0 3.97e-01 78.7% 51.0%
5049135 109.7.1.0 alpha superhelices › Repetitive alpha hairpins › Cytochrome c oxidase subunit E › Cytochrome c oxidase subunit E 0.64 45.0 4.67e-01 80.0% 80.0%
5075267 604.12.1.0 alpha bundles › Spectrin repeat-like › MIT domain › MIT domain 0.64 45.0 4.79e-01 80.0% 86.2%
3309583 604.12.1.65 alpha bundles › Spectrin repeat-like › MIT domain › MIT domain › MIT_ATG1 0.64 48.0 4.75e-01 81.3% 91.3%
3823524 109.4.1.1257 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR_1, PPR_2 0.63 43.0 3.70e-01 81.3% 42.4%
4979974 604.12.1.0 alpha bundles › Spectrin repeat-like › MIT domain › MIT domain 0.63 44.0 4.94e-01 82.7% 100.0%
165995 604.12.1.1 alpha bundles › Spectrin repeat-like › MIT domain › MIT domain › MIT 0.62 48.0 4.84e-01 84.0% 88.0%
3472152 109.4.1.626 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › TRAPPC9-Trs120 0.62 44.0 2.96e-01 82.7% 18.7%
3498003 109.4.1.626 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › TRAPPC9-Trs120 0.61 44.0 3.25e-01 84.0% 27.8%
5048121 109.4.1.0 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.61 47.0 3.47e-01 84.0% 30.7%
1843711 601.48.1.1 alpha bundles › Four-helical up-and-down bundle › vWA2 C-terminal domain › vWA2 C-terminal domain › ArnB_C 0.61 48.0 4.60e-01 92.0% 74.4%
4002826 604.12.1.9 alpha bundles › Spectrin repeat-like › MIT domain › MIT domain › ATG1-like_MIT2 0.61 47.0 4.33e-01 85.3% 71.0%
3838201 3883.1.1.1 alpha bundles › CDP-alcohol phosphotransferase helical bundle domain › CDP-alcohol phosphotransferase helical bundle domain › CDP-alcohol phosphotransferase helical bundle domain › CDP-OH_P_transf 0.60 48.0 3.75e-01 89.3% 52.0%
3165197 109.4.1.0 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.60 39.0 2.96e-01 80.0% 26.8%
3440790 604.12.1.9 alpha bundles › Spectrin repeat-like › MIT domain › MIT domain › ATG1-like_MIT2 0.60 46.0 4.51e-01 86.7% 89.4%
3974599 601.3.1.0 alpha bundles › Four-helical up-and-down bundle › Histidine-containing phosphotransfer domain, HPT domain › Histidine-containing phosphotransfer domain, HPT domain 0.60 51.0 4.19e-01 96.0% 60.0%
3614864 109.4.1.0 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.60 47.0 3.58e-01 86.7% 76.5%
5022046 109.4.1.198 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › TPR_12 0.60 48.0 3.38e-01 90.7% 62.0%
3171305 604.12.1.0 alpha bundles › Spectrin repeat-like › MIT domain › MIT domain 0.60 47.0 4.12e-01 86.7% 85.2%
5055533 109.4.1.0 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.60 43.0 3.56e-01 82.7% 41.4%
3657338 604.12.1.0 alpha bundles › Spectrin repeat-like › MIT domain › MIT domain 0.59 46.0 4.48e-01 86.7% 90.6%
5012033 601.7.1.0 alpha bundles › Four-helical up-and-down bundle › HEPN › Nucleotidyltransferase substrate binding subunit/domain 0.59 47.0 4.13e-01 88.0% 90.4%
3777209 109.4.1.192 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › TPR_8 0.59 45.0 3.43e-01 84.0% 34.4%
3810029 109.4.1.1262 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR, PPR_1, PPR_2, PPR_long 0.58 41.0 3.46e-01 84.0% 42.3%
4881789 109.3.1.0 alpha superhelices › Repetitive alpha hairpins › Ankyrin repeat › Ankyrin repeat 0.58 44.0 4.25e-01 86.7% 71.3%
3629701 604.12.1.0 alpha bundles › Spectrin repeat-like › MIT domain › MIT domain 0.58 44.0 4.22e-01 81.3% 77.6%
4944372 5073.1.2.0 alpha bundles › Calcium ATPase transmembrane domain-related › Calcium ATPase transmembrane domain-related › Copper efflux ATPase transmembrane domain 0.58 48.0 3.31e-01 92.0% 91.9%
4949961 109.7.1.0 alpha superhelices › Repetitive alpha hairpins › Cytochrome c oxidase subunit E › Cytochrome c oxidase subunit E 0.58 41.0 4.21e-01 77.3% 78.6%
5057580 109.4.1.0 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.58 46.0 3.35e-01 89.3% 61.8%
3926031 604.12.1.0 alpha bundles › Spectrin repeat-like › MIT domain › MIT domain 0.57 44.0 4.17e-01 85.3% 78.9%
3381051 109.4.1.1258 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR, PPR_1, PPR_2 0.57 48.0 2.98e-01 93.3% 38.4%
5028674 129.1.1.5 alpha arrays › 6-phosphogluconate dehydrogenase C-terminal domain-like › 6-phosphogluconate dehydrogenase C-terminal domain-like › 6-phosphogluconate dehydrogenase C-terminal domain-like › Ferric_reduct 0.57 46.0 3.34e-01 90.7% 39.6%
5078340 604.12.1.1 alpha bundles › Spectrin repeat-like › MIT domain › MIT domain › MIT 0.56 44.0 4.15e-01 84.0% 93.3%
3194235 109.4.1.0 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.56 38.0 3.58e-01 78.7% 55.8%
3603137 109.4.1.0 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.56 45.0 3.60e-01 92.0% 63.0%
5050536 604.12.1.0 alpha bundles › Spectrin repeat-like › MIT domain › MIT domain 0.56 43.0 4.40e-01 88.0% 90.0%
5076566 109.4.1.0 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.55 46.0 3.46e-01 100.0% 82.3%
3456188 109.7.1.10 alpha superhelices › Repetitive alpha hairpins › Cytochrome c oxidase subunit E › Cytochrome c oxidase subunit E › WAV3_C 0.55 43.0 4.35e-01 89.3% 88.0%
3291651 532.1.1.1 alpha arrays › Type III secretion system domain-like › Antibiotic binding domain of TipA-like multidrug resistance regulators › Antibiotic binding domain of TipA-like multidrug resistance regulators › TipAS 0.55 45.0 3.99e-01 94.7% 69.6%
4340169 601.3.1.1 alpha bundles › Four-helical up-and-down bundle › Histidine-containing phosphotransfer domain, HPT domain › Histidine-containing phosphotransfer domain, HPT domain › Hpt 0.54 44.0 3.79e-01 90.7% 72.4%
5062478 604.12.1.0 alpha bundles › Spectrin repeat-like › MIT domain › MIT domain 0.54 42.0 4.04e-01 86.7% 85.6%
1873797 109.4.1.41 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › Lipoprotein_11 0.54 36.0 3.50e-01 85.3% 59.8%
3816083 604.37.1.0 alpha bundles › Spectrin repeat-like › Legionella effector Lem22 › Legionella effector Lem22 0.54 45.0 3.48e-01 96.0% 73.0%
3646235 101.1.10.7 alpha arrays › HTH › HTH › Cyclin-like › Cyclin_C 0.54 40.0 3.89e-01 84.0% 71.8%
3435219 3718.1.1.27 alpha bundles › Flagellar protein fliT › Flagellar protein fliT › Flagellar protein fliT › DUF3755 0.51 38.0 3.83e-01 84.0% 93.8%