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ENA-CEUD01013717-CEUD01013717-1_prodigal-single.1__X__X__00337

Bact-Vir

ENA-CEUD01013717-CEUD01013717-1_prodigal-single.1__X__X__00337

Identity

Kingdom:
phage

Quality

73.3 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 4-78
PDB
Domain cluster: representative
CATH (52)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2zovA00 3.30.1330.60 Alpha Beta › 2-Layer Sandwich › 60s Ribosomal Protein L30; Chain: A; › OmpA-like domain 0.64 45.0 3.54e-01 74.7% 69.9%
1hufA00 3.30.1570.10 Alpha Beta › 2-Layer Sandwich › YopH tyrosine phosphatase N-terminal domain › Protein-tyrosine phosphatase, YopH, N-terminal domain 0.64 44.0 3.74e-01 82.7% 43.9%
1yj7B01 3.30.70.1530 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Hypothetical protein rpa1041 0.64 44.0 4.49e-01 86.7% 76.1%
6zepA01 3.40.630.10 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Zn peptidases 0.62 52.0 3.46e-01 97.3% 31.1%
4w91B01 3.90.1150.10 Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › Aspartate Aminotransferase, domain 1 0.61 52.0 4.38e-01 100.0% 81.2%
4ix8A01 3.90.1150.10 Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › Aspartate Aminotransferase, domain 1 0.61 53.0 4.34e-01 100.0% 83.2%
1cov400 4.10.80.10 Few Secondary Structures › Irregular › Rhinovirus 14, subunit 4 › Picornavirus coat protein VP4 0.60 22.0 2.63e-01 96.0% 41.8%
1w23A02 3.90.1150.10 Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › Aspartate Aminotransferase, domain 1 0.60 50.0 4.57e-01 96.0% 92.2%
2pb2B01 3.90.1150.10 Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › Aspartate Aminotransferase, domain 1 0.59 50.0 4.19e-01 98.7% 78.9%
1js3A03 3.90.1150.10 Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › Aspartate Aminotransferase, domain 1 0.59 52.0 4.81e-01 98.7% 97.9%
3jtnB00 3.30.70.1950 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.59 42.0 4.03e-01 78.7% 63.3%
2axyA00 3.30.1370.10 Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S8; Chain: A, domain 1 › K Homology domain, type 1 0.59 45.0 4.66e-01 85.3% 86.1%
3t4nA01 3.30.310.80 Alpha Beta › 2-Layer Sandwich › TATA-Binding Protein › Kinase associated domain 1, KA1 0.59 45.0 4.16e-01 82.7% 99.0%
7r9xA01 3.30.559.10 Alpha Beta › 2-Layer Sandwich › Chloramphenicol Acetyltransferase › Chloramphenicol acetyltransferase-like domain 0.58 44.0 3.50e-01 82.7% 79.1%
4jn3A01 3.30.559.10 Alpha Beta › 2-Layer Sandwich › Chloramphenicol Acetyltransferase › Chloramphenicol acetyltransferase-like domain 0.58 46.0 3.40e-01 88.0% 72.2%
1lc5A01 3.90.1150.10 Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › Aspartate Aminotransferase, domain 1 0.58 48.0 4.18e-01 96.0% 81.6%
1utaA00 3.30.70.1070 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Sporulation related repeat 0.58 41.0 4.11e-01 85.3% 74.0%
4e1oA03 3.90.1150.10 Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › Aspartate Aminotransferase, domain 1 0.58 50.0 4.62e-01 98.7% 96.9%
5k8bA02 3.90.1150.10 Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › Aspartate Aminotransferase, domain 1 0.58 47.0 3.93e-01 94.7% 95.9%
2ebbA00 3.30.1360.20 Alpha Beta › 2-Layer Sandwich › Gyrase A; domain 2 › Transcriptional coactivator/pterin dehydratase 0.58 49.0 4.60e-01 97.3% 97.9%
1usmA00 3.30.1360.20 Alpha Beta › 2-Layer Sandwich › Gyrase A; domain 2 › Transcriptional coactivator/pterin dehydratase 0.58 43.0 4.30e-01 81.3% 85.7%
4ozjA00 3.30.70.120 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.57 44.0 3.99e-01 82.7% 61.5%
3jcmH04 3.30.70.870 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Elongation Factor G (Translational Gtpase), domain 3 0.57 40.0 4.05e-01 85.3% 72.7%
3eucA01 3.90.1150.10 Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › Aspartate Aminotransferase, domain 1 0.57 38.0 3.21e-01 88.0% 38.0%
3l7yA02 3.30.1240.10 Alpha Beta › 2-Layer Sandwich › Hypothetical Protein, Haloacid Dehalogenase-like Hydrolase; Chain: A; domain 2 › 0.55 41.0 3.66e-01 80.0% 87.2%
5koxA02 3.30.70.2450 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.55 43.0 4.16e-01 89.3% 76.7%
3hdoA01 3.90.1150.10 Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › Aspartate Aminotransferase, domain 1 0.55 45.0 3.93e-01 98.7% 77.7%
3n01A00 3.30.70.2470 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Protein-tyrosine phosphatase receptor IA-2 ectodomain 0.55 41.0 3.96e-01 82.7% 80.5%
4zevA02 3.30.1240.10 Alpha Beta › 2-Layer Sandwich › Hypothetical Protein, Haloacid Dehalogenase-like Hydrolase; Chain: A; domain 2 › 0.54 41.0 3.70e-01 82.7% 86.9%
1k8kF00 3.30.1460.20 Alpha Beta › 2-Layer Sandwich › Yope Regulator; Chain: A, › 0.54 39.0 3.19e-01 81.3% 44.3%
2mkyA00 3.30.70.1530 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Hypothetical protein rpa1041 0.54 36.0 3.94e-01 85.3% 91.4%
1rniA02 3.30.2250.10 Alpha Beta › 2-Layer Sandwich › Prim-pol fold › Bifunctional DNA primase/polymerase domain 0.54 43.0 3.79e-01 89.3% 76.5%
3b8xA02 3.90.1150.10 Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › Aspartate Aminotransferase, domain 1 0.54 44.0 3.79e-01 93.3% 96.8%
3ncvA02 3.30.1370.100 Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S8; Chain: A, domain 1 › MutL, C-terminal domain, regulatory subdomain 0.54 43.0 4.14e-01 93.3% 82.4%
6lxgA01 3.30.70.260 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › ACT domain 0.53 39.0 4.01e-01 81.3% 89.0%
2b30A02 3.30.1240.10 Alpha Beta › 2-Layer Sandwich › Hypothetical Protein, Haloacid Dehalogenase-like Hydrolase; Chain: A; domain 2 › 0.53 40.0 3.59e-01 82.7% 87.2%
1tuaA01 3.30.1370.10 Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S8; Chain: A, domain 1 › K Homology domain, type 1 0.53 42.0 4.15e-01 93.3% 92.9%
5wt3A01 3.30.70.2580 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.53 35.0 3.72e-01 85.3% 80.0%
2gqfA01 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.52 45.0 3.24e-01 100.0% 96.8%
2zdiC00 1.10.287.370 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › 0.52 38.0 3.04e-01 76.0% 52.7%
1p5hA01 3.40.50.10540 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Crotonobetainyl-coa:carnitine coa-transferase; domain 1 0.52 45.0 3.02e-01 100.0% 53.9%
1i94H01 3.30.1370.30 Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S8; Chain: A, domain 1 › 0.52 37.0 3.75e-01 85.3% 74.4%
4mt1A07 3.30.70.1440 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Multidrug efflux transporter AcrB pore domain 0.52 38.0 3.51e-01 80.0% 72.5%
2j0wA04 3.30.70.260 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › ACT domain 0.52 39.0 3.90e-01 81.3% 88.0%
2ragA00 3.20.20.140 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Metal-dependent hydrolases 0.52 46.0 2.94e-01 100.0% 96.2%
2k49A00 2.30.29.80 Mainly Beta › Roll › PH-domain like › 0.52 36.0 3.14e-01 76.0% 46.6%
2ganA02 6.20.300.10 Special › Other non-globular › CbiD-like › 0.52 27.0 3.42e-01 89.3% 94.9%
2ab5B01 3.10.28.10 Alpha Beta › Roll › Endonuclease I-creI › Homing endonucleases 0.52 36.0 3.12e-01 74.7% 49.2%
1t94B02 3.30.70.270 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Reverse transcriptase/Diguanylate cyclase domain 0.51 42.0 3.63e-01 89.3% 75.6%
2ja9A02 3.30.1370.10 Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S8; Chain: A, domain 1 › K Homology domain, type 1 0.51 43.0 4.17e-01 98.7% 94.0%
2c4kA01 3.40.50.2020 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 0.50 41.0 3.26e-01 93.3% 91.0%
4cllA01 3.30.70.1230 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Nucleotide cyclase, GGDEF domain 0.50 42.0 3.15e-01 97.3% 87.6%
ECOD (57)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4948478 327.11.2.0 a+b two layers › Alpha-lytic protease prodomain-like › KH-domains › Eukaryotic type KH-domain (KH-domain type I) 0.71 51.0 5.47e-01 85.3% 87.5%
3423775 601.16.1.8 alpha bundles › Four-helical up-and-down bundle › FAT domain of focal adhesion kinase › FAT domain of focal adhesion kinase › DUF1218 0.60 43.0 3.44e-01 76.0% 80.0%
5063265 304.8.1.4 a+b two layers › Alpha-beta plaits › ACT-like › ACT-like › NikR_C 0.59 43.0 4.39e-01 78.7% 80.0%
3885544 327.11.2.0 a+b two layers › Alpha-lytic protease prodomain-like › KH-domains › Eukaryotic type KH-domain (KH-domain type I) 0.59 41.0 4.45e-01 84.0% 93.3%
3167249 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.59 41.0 3.67e-01 73.3% 86.7%
4947398 304.8.1.0 a+b two layers › Alpha-beta plaits › ACT-like › ACT-like 0.58 44.0 4.42e-01 81.3% 82.7%
4523483 304.8.1.4 a+b two layers › Alpha-beta plaits › ACT-like › ACT-like › NikR_C 0.58 43.0 4.40e-01 81.3% 81.3%
5041003 304.8.1.4 a+b two layers › Alpha-beta plaits › ACT-like › ACT-like › NikR_C 0.58 43.0 4.31e-01 81.3% 79.5%
3853513 2007.1.2.0 a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › Periplasmic binding protein-like I 0.57 50.0 3.42e-01 100.0% 82.5%
3220597 7515.1.1.5 a/b three-layered sandwiches › Alkaline phosphatase-like › Alkaline phosphatase-like › Alkaline phosphatase-like › Sulfatase,SGSH_C 0.56 45.0 2.78e-01 94.7% 51.5%
4954762 241.1.1.0 a+b two layers › Type III secretory system chaperone-like › Type III secretory system chaperone › Type III secretory system chaperone 0.56 49.0 4.22e-01 100.0% 95.2%
4980617 304.8.1.4 a+b two layers › Alpha-beta plaits › ACT-like › ACT-like › NikR_C 0.56 42.0 4.20e-01 81.3% 78.5%
3955512 305.1.1.0 a+b two layers › DCoH-like › RBP11-like subunits of RNA polymerase › RBP11-like subunits of RNA polymerase 0.55 41.0 3.64e-01 82.7% 60.0%
4469509 327.19.1.1 a+b two layers › Alpha-lytic protease prodomain-like › DNA mismatch repair protein MutL regulatory subdomain › DNA mismatch repair protein MutL regulatory subdomain › MutL_C 0.55 44.0 4.31e-01 90.7% 87.1%
3597627 304.151.1.0 a+b two layers › Alpha-beta plaits › Ferredoxin-like domain of receptor-type protein tyrosine phosphatase › Ferredoxin-like domain of receptor-type protein tyrosine phosphatase 0.55 42.0 3.73e-01 84.0% 72.2%
3887526 304.24.1.18 a+b two layers › Alpha-beta plaits › EF-G C-terminal domain-like › EF-G C-terminal domain-like › TYW2_N 0.55 39.0 3.77e-01 82.7% 65.9%
3448756 304.9.1.0 a+b two layers › Alpha-beta plaits › RNA-binding domain, RBD › RNA-binding domain, RBD 0.55 42.0 4.00e-01 82.7% 68.9%
3615029 4955.1.1.0 a+b two layers › permuted ferredoxin-like domain in yeast RNA-polymerase beta-prime subunit › permuted ferredoxin-like domain in yeast RNA-polymerase beta-prime subunit › permuted ferredoxin-like domain in yeast RNA-polymerase beta-prime subunit 0.54 41.0 3.97e-01 84.0% 84.4%
3711102 320.1.1.1 a+b two layers › R3H domain-like › R3H domain › R3H domain › R3H 0.54 34.0 3.17e-01 94.7% 47.0%
5000514 304.19.1.1 a+b two layers › Alpha-beta plaits › eIF-2-alpha, C-terminal domain › eIF-2-alpha, C-terminal domain › EIF_2_alpha 0.54 41.0 3.93e-01 84.0% 71.6%
3224886 3016.1.1.0 a+b two layers › C-terminal domain in some PLP-dependent transferases › C-terminal domain in some PLP-dependent transferases › C-terminal domain in some PLP-dependent transferases 0.54 42.0 3.93e-01 86.7% 74.7%
5049161 177.1.1.0 alpha bundles › Phospholipase C/P1 nuclease › Phospholipase C/P1 nuclease › Phospholipase C/P1 nuclease 0.54 47.0 3.47e-01 100.0% 99.0%
5083918 192.2.1.2 alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › Prefoldin 0.54 38.0 3.19e-01 74.7% 56.9%
3563017 304.24.1.18 a+b two layers › Alpha-beta plaits › EF-G C-terminal domain-like › EF-G C-terminal domain-like › TYW2_N 0.54 38.0 3.98e-01 82.7% 81.4%
4109815 304.24.1.18 a+b two layers › Alpha-beta plaits › EF-G C-terminal domain-like › EF-G C-terminal domain-like › TYW2_N 0.54 38.0 3.70e-01 82.7% 67.1%
3595328 320.1.1.0 a+b two layers › R3H domain-like › R3H domain › R3H domain 0.53 34.0 3.10e-01 94.7% 44.8%
4303742 192.2.1.2 alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › Prefoldin 0.53 38.0 3.26e-01 74.7% 64.2%
4541612 2004.1.1.514 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › AAA_23, AAA_29, SbcC_Walker_B 0.53 38.0 2.43e-01 76.0% 83.4%
5029396 192.2.1.2 alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › Prefoldin 0.53 38.0 3.30e-01 74.7% 67.0%
4143313 327.19.1.1 a+b two layers › Alpha-lytic protease prodomain-like › DNA mismatch repair protein MutL regulatory subdomain › DNA mismatch repair protein MutL regulatory subdomain › MutL_C 0.53 43.0 4.23e-01 94.7% 84.7%
4531300 327.19.1.1 a+b two layers › Alpha-lytic protease prodomain-like › DNA mismatch repair protein MutL regulatory subdomain › DNA mismatch repair protein MutL regulatory subdomain › MutL_C 0.53 43.0 4.21e-01 94.7% 89.4%
3997731 304.24.1.0 a+b two layers › Alpha-beta plaits › EF-G C-terminal domain-like › EF-G C-terminal domain-like 0.53 39.0 3.87e-01 86.7% 75.0%
3507097 304.20.1.3 a+b two layers › Alpha-beta plaits › PAP/Archaeal CCA-adding enzyme, C-terminal domain › PAP/Archaeal CCA-adding enzyme, C-terminal domain › Nrap_D6 0.53 40.0 3.55e-01 84.0% 85.2%
3329453 192.2.1.2 alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › Prefoldin 0.53 38.0 3.02e-01 74.7% 51.7%
5024938 192.2.1.2 alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › Prefoldin 0.53 38.0 3.13e-01 74.7% 56.9%
5068324 304.24.1.5 a+b two layers › Alpha-beta plaits › EF-G C-terminal domain-like › EF-G C-terminal domain-like › Trm5_N 0.53 36.0 3.73e-01 81.3% 77.1%
4104601 327.19.1.1 a+b two layers › Alpha-lytic protease prodomain-like › DNA mismatch repair protein MutL regulatory subdomain › DNA mismatch repair protein MutL regulatory subdomain › MutL_C 0.53 43.0 4.20e-01 96.0% 89.4%
3216556 109.4.1.0 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.52 40.0 3.18e-01 82.7% 39.0%
3598758 304.20.1.0 a+b two layers › Alpha-beta plaits › PAP/Archaeal CCA-adding enzyme, C-terminal domain › PAP/Archaeal CCA-adding enzyme, C-terminal domain 0.52 40.0 3.15e-01 82.7% 90.3%
4951472 192.2.1.2 alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › Prefoldin 0.52 38.0 3.04e-01 76.0% 51.0%
5075143 242.1.1.0 a+b two layers › Homing endonucleases-like › Homing endonucleases › Homing endonucleases 0.52 41.0 3.07e-01 88.0% 79.0%
3629469 304.4.1.53 a+b two layers › Alpha-beta plaits › Dimeric alpha+beta barrel › Dimeric alpha+beta barrel › R1_ABCA1 0.52 39.0 3.80e-01 82.7% 72.9%
5057974 192.2.1.2 alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › Prefoldin 0.52 37.0 3.23e-01 74.7% 64.3%
5040546 192.2.1.2 alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › Prefoldin 0.52 37.0 2.95e-01 74.7% 50.3%
3922996 198.1.1.4 alpha arrays › Saposin-like › Saposin-like › Saposin-like › DUF3456 0.52 36.0 3.16e-01 74.7% 95.2%
3229643 192.2.1.2 alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › Prefoldin 0.51 35.0 2.97e-01 76.0% 44.2%
4483443 2003.1.2.16 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain › FAD_binding_3,NAD_binding_8 0.51 46.0 3.07e-01 100.0% 83.7%
4959193 304.39.1.0 a+b two layers › Alpha-beta plaits › Mechanosensitive channel protein MscS (YggB), C-terminal domain › Mechanosensitive channel protein MscS (YggB), C-terminal domain 0.51 37.0 3.64e-01 81.3% 84.7%
5065094 242.1.1.0 a+b two layers › Homing endonucleases-like › Homing endonucleases › Homing endonucleases 0.51 36.0 3.18e-01 78.7% 51.2%
4937104 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.51 36.0 3.27e-01 74.7% 81.9%
4661346 192.2.1.2 alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › Prefoldin 0.50 36.0 2.90e-01 74.7% 51.7%
3642010 101.1.2.57 alpha arrays › HTH › HTH › winged helix domain › EAP30 0.50 35.0 3.29e-01 73.3% 76.8%
3172478 708.1.1.30 beta complex topology › ETN0001 domain-like › ETN0001 domain-like › NAC/WRKY/GCM/WOPR domain › PF30069, PF30070 0.50 45.0 3.46e-01 100.0% 47.3%
3741405 327.11.2.3 a+b two layers › Alpha-lytic protease prodomain-like › KH-domains › Eukaryotic type KH-domain (KH-domain type I) › KH_6 0.50 42.0 4.15e-01 96.0% 93.8%
3365716 304.8.1.0 a+b two layers › Alpha-beta plaits › ACT-like › ACT-like 0.50 38.0 3.69e-01 82.7% 82.4%
3622588 101.1.2.24 alpha arrays › HTH › HTH › winged helix domain › MAGE 0.50 41.0 2.98e-01 94.7% 46.3%
3514595 327.11.2.3 a+b two layers › Alpha-lytic protease prodomain-like › KH-domains › Eukaryotic type KH-domain (KH-domain type I) › KH_6 0.50 41.0 4.12e-01 93.3% 93.3%