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ENA-CEUD01013717-CEUD01013717-1_prodigal-single.1__X__X__00353
Bact-VirENA-CEUD01013717-CEUD01013717-1_prodigal-single.1__X__X__00353
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 10-98
Domain cluster:
rep: NC_048772.1__YP_009847018.1__HWC28_gp219__00219__D3-98
CATH (31)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2dqlA00 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.71 | 54.0 | 4.88e-01 | 78.7% | 66.1% |
| 2p4wA01 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.69 | 48.0 | 4.57e-01 | 73.0% | 62.1% |
| 1bm9A00 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.67 | 49.0 | 4.40e-01 | 75.3% | 64.2% |
| 5f7qC01 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.67 | 49.0 | 5.43e-01 | 75.3% | 97.1% |
| 2mlgA00 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.67 | 48.0 | 5.13e-01 | 80.9% | 85.7% |
| 3c18A03 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.66 | 40.0 | 4.81e-01 | 98.9% | 94.7% |
| 1sfxB00 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.65 | 45.0 | 4.25e-01 | 73.0% | 60.6% |
| 5h20A00 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.65 | 47.0 | 4.46e-01 | 75.3% | 68.9% |
| 3l9fA01 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.62 | 43.0 | 4.36e-01 | 71.9% | 79.8% |
| 3elkA00 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.61 | 46.0 | 4.38e-01 | 79.8% | 71.4% |
| 4ejoA00 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.61 | 45.0 | 4.15e-01 | 77.5% | 63.4% |
| 3ke2B00 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.60 | 42.0 | 4.13e-01 | 74.2% | 66.7% |
| 1jo0A00 | 3.30.110.60 | Alpha Beta › 2-Layer Sandwich › Translation Initiation Factor IF3 › YhbY-like | 0.58 | 45.0 | 4.44e-01 | 100.0% | 79.4% |
| 3g3sA01 | 3.40.630.110 | Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › GNAT acetyltransferase-like | 0.57 | 48.0 | 4.44e-01 | 93.3% | 83.6% |
| 2ab5B01 | 3.10.28.10 | Alpha Beta › Roll › Endonuclease I-creI › Homing endonucleases | 0.56 | 40.0 | 3.57e-01 | 74.2% | 57.0% |
| 2yqzA01 | 3.40.50.150 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 | 0.56 | 48.0 | 3.87e-01 | 100.0% | 85.5% |
| 1vm0A00 | 3.30.110.20 | Alpha Beta › 2-Layer Sandwich › Translation Initiation Factor IF3 › Alba-like domain | 0.56 | 46.0 | 4.58e-01 | 89.9% | 88.2% |
| 3zieD00 | 3.30.110.150 | Alpha Beta › 2-Layer Sandwich › Translation Initiation Factor IF3 › SepF-like protein | 0.56 | 41.0 | 4.20e-01 | 98.9% | 85.4% |
| 3u1dB00 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.54 | 38.0 | 3.29e-01 | 73.0% | 91.6% |
| 1repC02 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.53 | 37.0 | 3.72e-01 | 74.2% | 94.5% |
| 1atnD00 | 3.60.10.10 | Alpha Beta › 4-Layer Sandwich › Deoxyribonuclease I; Chain A › Endonuclease/exonuclease/phosphatase | 0.53 | 44.0 | 3.28e-01 | 96.6% | 98.1% |
| 4z9eA00 | 3.30.110.20 | Alpha Beta › 2-Layer Sandwich › Translation Initiation Factor IF3 › Alba-like domain | 0.52 | 42.0 | 4.37e-01 | 88.8% | 100.0% |
| 2py6A03 | 3.40.50.150 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 | 0.52 | 45.0 | 3.67e-01 | 100.0% | 97.8% |
| 3zigA00 | 3.30.110.150 | Alpha Beta › 2-Layer Sandwich › Translation Initiation Factor IF3 › SepF-like protein | 0.52 | 40.0 | 4.12e-01 | 98.9% | 90.2% |
| 1zo0A00 | 3.40.630.60 | Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › | 0.52 | 44.0 | 4.03e-01 | 98.9% | 82.5% |
| 4xrpC01 | 3.40.50.150 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 | 0.52 | 44.0 | 3.60e-01 | 96.6% | 93.7% |
| 2zihC00 | 1.10.3630.10 | Mainly Alpha › Orthogonal Bundle › yeast vps74-n-term truncation variant fold › yeast vps74-n-term truncation variant domain like | 0.52 | 42.0 | 3.05e-01 | 91.0% | 98.9% |
| 2as0A03 | 3.40.50.150 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 | 0.51 | 43.0 | 3.42e-01 | 100.0% | 85.8% |
| 4o8uA00 | 3.30.420.440 | Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › Protein of unknown function DUF4152 | 0.51 | 44.0 | 3.34e-01 | 97.8% | 94.7% |
| 1g38A01 | 3.40.50.150 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 | 0.51 | 44.0 | 3.38e-01 | 100.0% | 79.8% |
| 2yq1C00 | 3.30.70.390 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Epstein Barr virus nuclear antigen-1, DNA-binding domain | 0.51 | 37.0 | 3.27e-01 | 75.3% | 55.7% |
ECOD (60)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4988082 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.74 | 48.0 | 5.39e-01 | 71.9% | 85.7% |
| 4980261 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.71 | 50.0 | 4.77e-01 | 73.0% | 66.7% |
| 3727445 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.71 | 53.0 | 4.97e-01 | 77.5% | 73.3% |
| 4012739 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.70 | 49.0 | 4.27e-01 | 73.0% | 51.9% |
| 3488429 | 375.1.1.179 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › TFIIE_alpha | 0.70 | 49.0 | 3.84e-01 | 73.0% | 37.3% |
| 3783244 | 375.1.1.179 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › TFIIE_alpha | 0.70 | 49.0 | 3.62e-01 | 73.0% | 30.7% |
| 3223233 | 375.1.1.179 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › TFIIE_alpha | 0.70 | 49.0 | 3.58e-01 | 73.0% | 30.0% |
| 5061514 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.70 | 51.0 | 3.93e-01 | 76.4% | 84.2% |
| 3689581 | 101.1.2.517 ↗ | alpha arrays › HTH › HTH › winged helix domain › RNA_pol_Rpc82, HTH_9, POLR3C_WHD | 0.69 | 49.0 | 2.97e-01 | 73.0% | 13.1% |
| 3989819 | 101.1.2.135 ↗ | alpha arrays › HTH › HTH › winged helix domain › MarR_2 | 0.69 | 49.0 | 5.34e-01 | 75.3% | 94.7% |
| 3738674 | 101.1.2.207 ↗ | alpha arrays › HTH › HTH › winged helix domain › TFC3_eWH | 0.69 | 50.0 | 4.61e-01 | 75.3% | 79.1% |
| 3550392 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.68 | 48.0 | 3.77e-01 | 73.0% | 37.3% |
| 3280969 | 101.1.2.136 ↗ | alpha arrays › HTH › HTH › winged helix domain › HTH_20 | 0.68 | 50.0 | 4.78e-01 | 75.3% | 71.0% |
| 3485716 | 101.1.2.31 ↗ | alpha arrays › HTH › HTH › winged helix domain › TFIIE_alpha | 0.68 | 48.0 | 3.72e-01 | 73.0% | 36.3% |
| 4001659 | 101.1.2.236 ↗ | alpha arrays › HTH › HTH › winged helix domain › POLR3C_WHD | 0.68 | 48.0 | 3.76e-01 | 73.0% | 39.4% |
| 4232356 | 101.1.2.517 ↗ | alpha arrays › HTH › HTH › winged helix domain › RNA_pol_Rpc82, HTH_9, POLR3C_WHD | 0.68 | 48.0 | 2.91e-01 | 73.0% | 13.0% |
| 2609 | 101.1.2.38 ↗ | alpha arrays › HTH › HTH › winged helix domain › RTP | 0.67 | 49.0 | 4.40e-01 | 75.3% | 64.2% |
| 4022243 | 101.1.2.517 ↗ | alpha arrays › HTH › HTH › winged helix domain › RNA_pol_Rpc82, HTH_9, POLR3C_WHD | 0.67 | 47.0 | 2.91e-01 | 73.0% | 13.7% |
| 5080275 | 101.1.2.914 ↗ | alpha arrays › HTH › HTH › winged helix domain › DUF6015 | 0.67 | 46.0 | 4.18e-01 | 73.0% | 52.5% |
| 3724779 | 101.1.2.236 ↗ | alpha arrays › HTH › HTH › winged helix domain › POLR3C_WHD | 0.67 | 47.0 | 3.76e-01 | 73.0% | 40.6% |
| 3930816 | 101.1.2.236 ↗ | alpha arrays › HTH › HTH › winged helix domain › POLR3C_WHD | 0.67 | 48.0 | 3.29e-01 | 73.0% | 25.1% |
| 5016560 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.67 | 47.0 | 4.67e-01 | 73.0% | 71.6% |
| 3741614 | 101.1.2.236 ↗ | alpha arrays › HTH › HTH › winged helix domain › POLR3C_WHD | 0.67 | 47.0 | 3.80e-01 | 73.0% | 41.8% |
| 4081599 | 101.1.2.236 ↗ | alpha arrays › HTH › HTH › winged helix domain › POLR3C_WHD | 0.67 | 47.0 | 4.38e-01 | 73.0% | 62.7% |
| 4443506 | 101.1.2.517 ↗ | alpha arrays › HTH › HTH › winged helix domain › RNA_pol_Rpc82, HTH_9, POLR3C_WHD | 0.66 | 47.0 | 3.01e-01 | 73.0% | 17.1% |
| 3262460 | 101.1.2.661 ↗ | alpha arrays › HTH › HTH › winged helix domain › HTH_9, POLR3C_WHD | 0.66 | 47.0 | 3.05e-01 | 73.0% | 18.9% |
| 3493458 | 101.1.2.236 ↗ | alpha arrays › HTH › HTH › winged helix domain › POLR3C_WHD | 0.66 | 46.0 | 3.87e-01 | 73.0% | 46.0% |
| 4997952 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.66 | 46.0 | 4.74e-01 | 71.9% | 85.9% |
| 4948474 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.66 | 47.0 | 5.18e-01 | 74.2% | 97.1% |
| 3413597 | 101.1.2.394 ↗ | alpha arrays › HTH › HTH › winged helix domain › eWH_GTF3C1 | 0.66 | 47.0 | 3.16e-01 | 75.3% | 23.2% |
| 4190752 | 101.1.2.236 ↗ | alpha arrays › HTH › HTH › winged helix domain › POLR3C_WHD | 0.65 | 46.0 | 4.57e-01 | 73.0% | 72.6% |
| 5010738 | 101.1.2.30 ↗ | alpha arrays › HTH › HTH › winged helix domain › TrmB | 0.65 | 46.0 | 4.18e-01 | 73.0% | 57.6% |
| 3781172 | 101.1.2.517 ↗ | alpha arrays › HTH › HTH › winged helix domain › RNA_pol_Rpc82, HTH_9, POLR3C_WHD | 0.65 | 46.0 | 2.94e-01 | 73.0% | 17.0% |
| 3582574 | 101.1.2.236 ↗ | alpha arrays › HTH › HTH › winged helix domain › POLR3C_WHD | 0.65 | 46.0 | 4.63e-01 | 73.0% | 76.7% |
| 3630104 | 192.24.1.6 ↗ | alpha bundles › Long alpha-hairpin › RPC62 helical hairpin domain › RPC62 helical hairpin domain › RNA_pol_Rpc82, HTH_9, POLR3C_WHD | 0.65 | 46.0 | 2.95e-01 | 73.0% | 18.2% |
| 5082698 | 101.1.2.914 ↗ | alpha arrays › HTH › HTH › winged helix domain › DUF6015 | 0.65 | 45.0 | 4.50e-01 | 73.0% | 71.1% |
| 3655482 | 101.1.2.386 ↗ | alpha arrays › HTH › HTH › winged helix domain › WH_DRP | 0.65 | 46.0 | 3.68e-01 | 75.3% | 44.4% |
| 5050885 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.64 | 42.0 | 4.73e-01 | 76.4% | 92.3% |
| 5045098 | 101.1.2.136 ↗ | alpha arrays › HTH › HTH › winged helix domain › HTH_20 | 0.64 | 45.0 | 4.50e-01 | 73.0% | 87.8% |
| 4025929 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.63 | 45.0 | 4.09e-01 | 73.0% | 74.8% |
| 3821254 | 101.1.2.88 ↗ | alpha arrays › HTH › HTH › winged helix domain › Dimerisation | 0.62 | 44.0 | 3.96e-01 | 74.2% | 64.0% |
| 3483770 | 101.1.2.271 ↗ | alpha arrays › HTH › HTH › winged helix domain › B-block_TFIIIC | 0.62 | 50.0 | 4.14e-01 | 89.9% | 87.9% |
| 4940742 | 101.1.2.554 ↗ | alpha arrays › HTH › HTH › winged helix domain › PF30184 | 0.61 | 44.0 | 4.49e-01 | 74.2% | 84.7% |
| 3194355 | 101.1.2.517 ↗ | alpha arrays › HTH › HTH › winged helix domain › RNA_pol_Rpc82, HTH_9, POLR3C_WHD | 0.58 | 41.0 | 2.53e-01 | 74.2% | 12.4% |
| 4354474 | 101.1.2.598 ↗ | alpha arrays › HTH › HTH › winged helix domain › RNA_pol_Rpc82, POLR3C_WHD | 0.58 | 41.0 | 2.62e-01 | 74.2% | 14.8% |
| 3625937 | 101.1.2.216 ↗ | alpha arrays › HTH › HTH › winged helix domain › CED4_WHD | 0.58 | 41.0 | 3.54e-01 | 75.3% | 51.3% |
| 4990676 | 101.1.2.101 ↗ | alpha arrays › HTH › HTH › winged helix domain › Cdc6_C | 0.57 | 40.0 | 3.82e-01 | 75.3% | 72.7% |
| 3953587 | 2008.1.1.168 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › PF30184 | 0.57 | 40.0 | 3.88e-01 | 74.2% | 72.0% |
| 3385565 | 320.1.1.16 ↗ | a+b two layers › R3H domain-like › R3H domain › R3H domain › HP0268 | 0.57 | 43.0 | 4.54e-01 | 94.4% | 94.9% |
| 3248329 | 2003.1.5.0 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases | 0.56 | 47.0 | 3.44e-01 | 96.6% | 75.7% |
| 3781035 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.56 | 40.0 | 3.95e-01 | 74.2% | 94.7% |
| 3608304 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.54 | 37.0 | 3.52e-01 | 71.9% | 74.5% |
| 3595010 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.54 | 38.0 | 3.73e-01 | 74.2% | 95.0% |
| 3599928 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.53 | 39.0 | 3.55e-01 | 78.7% | 95.2% |
| 3220341 | 2003.1.5.0 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases | 0.53 | 44.0 | 3.40e-01 | 97.8% | 76.1% |
| 3877290 | 101.1.2.699 ↗ | alpha arrays › HTH › HTH › winged helix domain › KCTD_C | 0.53 | 39.0 | 3.63e-01 | 79.8% | 91.3% |
| 3219323 | 207.1.1.81 ↗ | beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats › FTH | 0.52 | 41.0 | 3.08e-01 | 88.8% | 81.7% |
| None | — | 0.51 | 44.0 | 3.54e-01 | 100.0% | 94.6% | |
| 4978111 | 242.1.1.0 ↗ | a+b two layers › Homing endonucleases-like › Homing endonucleases › Homing endonucleases | 0.51 | 36.0 | 3.12e-01 | 74.2% | 54.5% |
| 4672348 | 2003.1.12.2 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › UDPG/MGDP dehydrogenase C-terminal domain › SRR1 | 0.50 | 43.0 | 3.48e-01 | 100.0% | 86.3% |