Back to structures

ERMGT119_2_scaffold_6_prodigal-single.1__X__X__00049

Bact-Vir

ERMGT119_2_scaffold_6_prodigal-single.1__X__X__00049

Identity

Kingdom:
phage

Quality

87.5 mean pLDDT

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 9-75
PDB
CATH (47)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2v79A00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.78 35.0 2.91e-01 89.6% 25.2%
2oarB00 1.10.1200.120 Mainly Alpha › Orthogonal Bundle › Non-ribosomal Peptide Synthetase Peptidyl Carrier Protein; Chain A › Large-conductance mechanosensitive channel, MscL; domain 1 0.76 43.0 3.45e-01 89.6% 30.4%
1xttB00 3.40.50.2020 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 0.67 39.0 2.73e-01 82.1% 18.8%
3r0aA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.66 46.0 3.77e-01 71.6% 97.5%
2kl8A00 3.30.70.600 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Ribosomal protein S10 0.62 43.0 3.99e-01 71.6% 56.5%
4djbA00 3.30.70.2870 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Mastadenovirus E4 ORF3 0.62 50.0 4.14e-01 86.6% 54.2%
6abqB00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.61 46.0 3.90e-01 79.1% 86.8%
2rp4A00 6.10.280.60 Special › Helix non-globular › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Transcription factor p53, C-terminal domain 0.61 43.0 4.25e-01 89.6% 70.4%
5mmiG01 3.90.930.12 Alpha Beta › Alpha-Beta Complex › Outer Surface Protein A; domain 3 › Ribosomal protein L6 0.59 43.0 4.04e-01 77.6% 73.8%
6le1A01 3.30.70.330 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › RRM (RNA recognition motif) domain 0.59 44.0 4.43e-01 79.1% 85.3%
1vdhA01 3.30.70.1030 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Apc35880; domain 1 0.57 40.0 3.35e-01 74.6% 41.3%
3dfeA00 3.30.70.120 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.57 39.0 3.67e-01 70.1% 58.5%
4em2A00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.57 50.0 3.85e-01 97.0% 48.0%
6xzqA01 3.40.91.90 Alpha Beta › 3-Layer(aba) Sandwich › Restriction Endonuclease › Influenza RNA-dependent RNA polymerase subunit PA, endonuclease domain 0.57 42.0 3.17e-01 79.1% 48.8%
2p92A00 3.30.70.1490 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Cysteine protease Prp 0.56 42.0 3.76e-01 80.6% 56.8%
2ethA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.56 51.0 3.95e-01 100.0% 51.8%
5inwA02 2.30.39.10 Mainly Beta › Roll › Alpha-1-antitrypsin; domain 1 › Alpha-1-antitrypsin, domain 1 0.56 38.0 3.35e-01 77.6% 45.4%
5h20A00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.56 45.0 3.92e-01 89.6% 59.2%
4pk9A00 3.40.1090.10 Alpha Beta › 3-Layer(aba) Sandwich › Cytosolic phospholipase A2 catalytic domain › Cytosolic phospholipase A2 catalytic domain 0.55 42.0 2.65e-01 82.1% 76.3%
2lu1A00 3.30.70.2370 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.55 38.0 3.58e-01 74.6% 68.5%
4r9iA02 2.30.39.10 Mainly Beta › Roll › Alpha-1-antitrypsin; domain 1 › Alpha-1-antitrypsin, domain 1 0.55 39.0 3.46e-01 77.6% 51.0%
1hp7A01 2.30.39.10 Mainly Beta › Roll › Alpha-1-antitrypsin; domain 1 › Alpha-1-antitrypsin, domain 1 0.55 37.0 3.41e-01 77.6% 50.5%
1hbxA01 3.40.1810.10 Alpha Beta › 3-Layer(aba) Sandwich › SRF-like › Transcription factor, MADS-box 0.55 41.0 4.10e-01 83.6% 80.3%
7xinA03 3.90.1150.10 Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › Aspartate Aminotransferase, domain 1 0.55 38.0 3.19e-01 80.6% 44.0%
1jgsA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.54 45.0 3.60e-01 95.5% 45.7%
1bm9A00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.54 48.0 3.98e-01 100.0% 75.8%
1vehA01 3.30.300.130 Alpha Beta › 2-Layer Sandwich › GMP Synthetase; Chain A, domain 3 › Fe-S cluster assembly (FSCA) 0.54 37.0 3.62e-01 74.6% 65.3%
2dqlA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.53 38.0 3.17e-01 82.1% 43.5%
6lpnA04 3.30.70.2740 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.53 40.0 3.58e-01 80.6% 83.2%
5dymA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.53 42.0 3.79e-01 94.0% 61.5%
2od4B01 3.30.70.100 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.53 37.0 3.43e-01 74.6% 56.2%
3l7wA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.53 43.0 3.81e-01 94.0% 74.3%
3pm9A04 3.30.70.2740 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.52 36.0 3.33e-01 71.6% 58.6%
3fdjA03 3.30.1180.10 Alpha Beta › 2-Layer Sandwich › Hypothetical Protein Tm841; Chain: A;domain 3 › 0.52 39.0 3.21e-01 80.6% 83.6%
3bpvA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.52 44.0 3.53e-01 95.5% 53.3%
2gukA00 3.30.2190.10 Alpha Beta › 2-Layer Sandwich › PG1857-like › PG1857-like 0.52 37.0 3.29e-01 79.1% 70.3%
2fh5A01 3.30.450.60 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › 0.52 43.0 3.54e-01 91.0% 51.6%
3hz7A00 3.30.110.40 Alpha Beta › 2-Layer Sandwich › Translation Initiation Factor IF3 › TusA-like domain 0.52 35.0 3.47e-01 71.6% 71.2%
3buxB03 3.30.505.10 Alpha Beta › 2-Layer Sandwich › SHC Adaptor Protein › SH2 domain 0.51 36.0 3.36e-01 74.6% 89.5%
4esbA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.51 46.0 3.96e-01 100.0% 79.6%
4ykiA01 3.40.190.10 Alpha Beta › 3-Layer(aba) Sandwich › D-Maltodextrin-Binding Protein; domain 2 › Periplasmic binding protein-like II 0.51 39.0 3.17e-01 88.1% 56.5%
1c7uA01 3.40.1810.10 Alpha Beta › 3-Layer(aba) Sandwich › SRF-like › Transcription factor, MADS-box 0.51 34.0 3.47e-01 80.6% 73.0%
7dvrA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.51 45.0 3.56e-01 100.0% 51.8%
4f3nA00 3.40.50.12710 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 0.51 43.0 2.76e-01 100.0% 78.3%
1sfxB00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.50 42.0 3.61e-01 91.0% 58.7%
5mz2I00 3.30.190.10 Alpha Beta › 2-Layer Sandwich › Ribulose 1,5 Bisphosphate Carboxylase/Oxygenase › Ribulose bisphosphate carboxylase, small subunit 0.50 36.0 2.87e-01 76.1% 44.6%
3ieyB00 3.40.1350.150 Alpha Beta › 3-Layer(aba) Sandwich › Trna Endonuclease; Chain: A, domain 1 › 0.50 37.0 2.91e-01 79.1% 59.2%
ECOD (62)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3321517 2007.2.3.9 a/b three-layered sandwiches › Flavodoxin-like › Flavoproteins/Phosphotyrosine protein phosphatases-like › (Phosphotyrosine protein) phosphatases II › PTPlike_phytase 0.90 47.0 2.82e-01 86.6% 9.2%
3800293 304.8.1.0 a+b two layers › Alpha-beta plaits › ACT-like › ACT-like 0.81 38.0 3.41e-01 71.6% 33.3%
3318217 263.1.1.1 a+b three layers › SRF-like › SRF-like › SRF-like › SRF-TF 0.80 43.0 4.00e-01 82.1% 43.8%
3781870 263.1.1.1 a+b three layers › SRF-like › SRF-like › SRF-like › SRF-TF 0.80 42.0 3.89e-01 82.1% 41.2%
4995243 3501.1.1.1 a+b two layers › protein PCC1 › protein PCC1 › protein PCC1 › Pcc1 0.80 57.0 5.48e-01 74.6% 66.7%
4274656 263.1.1.0 a+b three layers › SRF-like › SRF-like › SRF-like 0.79 58.0 4.48e-01 95.5% 37.1%
3380863 2007.2.3.9 a/b three-layered sandwiches › Flavodoxin-like › Flavoproteins/Phosphotyrosine protein phosphatases-like › (Phosphotyrosine protein) phosphatases II › PTPlike_phytase 0.78 53.0 2.98e-01 70.1% 13.6%
4026519 3871.1.1.1 alpha duplicates or obligate multimers › PHIST › PHIST › PHIST › PRESAN 0.73 52.0 4.06e-01 76.1% 37.0%
3601501 2007.2.3.0 a/b three-layered sandwiches › Flavodoxin-like › Flavoproteins/Phosphotyrosine protein phosphatases-like › (Phosphotyrosine protein) phosphatases II 0.73 51.0 2.76e-01 73.1% 7.9%
4669204 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.70 49.0 2.91e-01 71.6% 94.8%
3602715 101.1.2.30 alpha arrays › HTH › HTH › winged helix domain › TrmB 0.69 50.0 3.98e-01 76.1% 78.4%
5023661 101.1.2.30 alpha arrays › HTH › HTH › winged helix domain › TrmB 0.68 49.0 3.84e-01 74.6% 78.3%
4067342 5069.1.1.15 alpha bundles › Transmembrane heme-binding four-helical bundle › Transmembrane heme-binding four-helical bundle › Transmembrane di-heme cytochromes › Cytochrom_C_asm 0.67 51.0 3.18e-01 80.6% 51.9%
4944959 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.65 44.0 3.72e-01 71.6% 84.5%
3627409 6166.1.1.1 alpha bundles › N-terminal domain of Delta(14)-sterol reductase, MaSR1 › N-terminal domain of Delta(14)-sterol reductase, MaSR1 › N-terminal domain of Delta(14)-sterol reductase, MaSR1 › ERG4_ERG24 0.64 51.0 3.61e-01 85.1% 47.5%
4222853 7523.1.1.0 a/b three-layered sandwiches › Periplasmic binding protein-like II › Periplasmic binding protein-like II › Periplasmic binding protein-like II 0.64 52.0 4.34e-01 88.1% 54.8%
4965874 101.1.2.30 alpha arrays › HTH › HTH › winged helix domain › TrmB 0.64 47.0 3.69e-01 77.6% 73.9%
3934420 5001.1.1.44 alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › 7TM_GPCR_Srv 0.63 58.0 4.03e-01 100.0% 54.8%
4965204 7523.1.1.0 a/b three-layered sandwiches › Periplasmic binding protein-like II › Periplasmic binding protein-like II › Periplasmic binding protein-like II 0.63 54.0 4.51e-01 95.5% 55.0%
3483771 101.1.2.394 alpha arrays › HTH › HTH › winged helix domain › eWH_GTF3C1 0.63 47.0 4.18e-01 79.1% 97.9%
5068497 101.1.2.110 alpha arrays › HTH › HTH › winged helix domain › HTH_IclR 0.63 57.0 4.66e-01 100.0% 57.6%
3921484 5001.1.1.3 alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › 7tm_2 0.62 52.0 3.47e-01 91.0% 51.0%
4449508 331.2.1.13 a+b two layers › TBP-like › Phosphoglucomutase, C-terminal domain › Phosphoglucomutase, C-terminal domain › DinI 0.62 44.0 4.17e-01 74.6% 62.5%
4982514 304.162.1.0 a+b two layers › Alpha-beta plaits › Competence or damage-inducible protein CinA middle domain › Competence or damage-inducible protein CinA middle domain 0.61 45.0 4.34e-01 77.6% 69.3%
5080131 101.1.2.141 alpha arrays › HTH › HTH › winged helix domain › HTH_24 0.61 54.0 4.45e-01 98.5% 55.0%
3717848 2007.2.3.9 a/b three-layered sandwiches › Flavodoxin-like › Flavoproteins/Phosphotyrosine protein phosphatases-like › (Phosphotyrosine protein) phosphatases II › PTPlike_phytase 0.61 48.0 2.71e-01 83.6% 35.1%
3587631 186.1.1.0 alpha arrays › lambda integrase-N-like › lambda integrase-N › lambda integrase-N 0.61 41.0 3.24e-01 70.1% 59.3%
4034385 7523.1.1.0 a/b three-layered sandwiches › Periplasmic binding protein-like II › Periplasmic binding protein-like II › Periplasmic binding protein-like II 0.60 49.0 4.12e-01 88.1% 57.3%
4978825 101.1.2.30 alpha arrays › HTH › HTH › winged helix domain › TrmB 0.60 53.0 4.40e-01 100.0% 56.7%
3519143 5001.1.1.0 alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like 0.60 49.0 3.22e-01 92.5% 44.9%
5006003 101.1.2.30 alpha arrays › HTH › HTH › winged helix domain › TrmB 0.60 53.0 4.37e-01 100.0% 55.8%
5031648 101.1.2.31 alpha arrays › HTH › HTH › winged helix domain › TFIIE_alpha 0.58 52.0 3.90e-01 100.0% 47.9%
415845 101.1.2.214 alpha arrays › HTH › HTH › winged helix domain › DnaD_N 0.58 50.0 4.10e-01 97.0% 53.7%
4002132 5001.1.1.1 alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › 7tm_1 0.58 51.0 3.22e-01 95.5% 74.8%
5051534 101.1.2.48 alpha arrays › HTH › HTH › winged helix domain › PadR 0.58 51.0 3.73e-01 100.0% 82.2%
4948149 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.57 49.0 4.13e-01 100.0% 57.3%
4928248 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.57 52.0 4.14e-01 100.0% 58.5%
4023956 3871.1.1.1 alpha duplicates or obligate multimers › PHIST › PHIST › PHIST › PRESAN 0.57 46.0 3.68e-01 95.5% 45.4%
2755218 5001.1.1.1 alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › 7tm_1 0.56 50.0 3.52e-01 100.0% 50.5%
3626235 5001.1.1.1 alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › 7tm_1 0.55 46.0 2.96e-01 92.5% 43.1%
5059461 101.1.2.30 alpha arrays › HTH › HTH › winged helix domain › TrmB 0.55 50.0 4.04e-01 100.0% 76.8%
4943632 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.54 48.0 4.00e-01 100.0% 82.5%
3998938 6110.1.1.1 alpha superhelices › Linker domain of cytoplasmic dynein heavy chain › Linker domain of cytoplasmic dynein heavy chain › Linker domain of cytoplasmic dynein heavy chain › DHC_N2 0.54 50.0 2.94e-01 100.0% 32.0%
5016748 101.1.2.30 alpha arrays › HTH › HTH › winged helix domain › TrmB 0.54 46.0 3.80e-01 95.5% 54.2%
5028348 101.1.2.31 alpha arrays › HTH › HTH › winged helix domain › TFIIE_alpha 0.54 44.0 3.35e-01 100.0% 93.8%
3937515 5001.1.1.1 alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › 7tm_1 0.54 46.0 2.91e-01 94.0% 40.6%
3322159 263.1.1.1 a+b three layers › SRF-like › SRF-like › SRF-like › SRF-TF 0.54 41.0 3.55e-01 86.6% 60.0%
3818050 263.1.1.1 a+b three layers › SRF-like › SRF-like › SRF-like › SRF-TF 0.54 38.0 3.70e-01 82.1% 65.0%
4971747 101.1.2.30 alpha arrays › HTH › HTH › winged helix domain › TrmB 0.53 42.0 3.54e-01 85.1% 51.8%
4133554 304.24.1.21 a+b two layers › Alpha-beta plaits › EF-G C-terminal domain-like › EF-G C-terminal domain-like › EFG_C+EFG_III 0.53 36.0 2.63e-01 70.1% 25.3%
3363114 325.1.7.25 a+b complex topology › alpha/beta-Hammerhead/Barrel-sandwich hybrid › alpha/beta-Hammerhead/Barrel-sandwich hybrid › Single hybrid motif › PORR 0.53 44.0 4.02e-01 100.0% 70.0%
2782521 263.1.1.1 a+b three layers › SRF-like › SRF-like › SRF-like › SRF-TF 0.53 35.0 3.70e-01 71.6% 80.0%
4098328 304.24.1.3 a+b two layers › Alpha-beta plaits › EF-G C-terminal domain-like › EF-G C-terminal domain-like › EFG_III 0.53 36.0 3.07e-01 70.1% 63.6%
2494143 101.1.2.48 alpha arrays › HTH › HTH › winged helix domain › PadR 0.53 42.0 3.66e-01 91.0% 71.2%
4507638 101.1.2.31 alpha arrays › HTH › HTH › winged helix domain › TFIIE_alpha 0.53 46.0 3.49e-01 100.0% 55.8%
4089543 304.24.1.21 a+b two layers › Alpha-beta plaits › EF-G C-terminal domain-like › EF-G C-terminal domain-like › EFG_C+EFG_III 0.53 36.0 2.58e-01 70.1% 34.5%
4091138 304.24.1.3 a+b two layers › Alpha-beta plaits › EF-G C-terminal domain-like › EF-G C-terminal domain-like › EFG_III 0.53 36.0 3.31e-01 71.6% 77.8%
4944834 3625.1.1.0 alpha bundles › CRISPR RNA silencing complex Cmr2 subunit second helical domain › CRISPR RNA silencing complex Cmr2 subunit second helical domain › CRISPR RNA silencing complex Cmr2 subunit second helical domain 0.52 37.0 3.27e-01 77.6% 74.5%
4523274 304.24.1.1 a+b two layers › Alpha-beta plaits › EF-G C-terminal domain-like › EF-G C-terminal domain-like › EFG_C 0.52 35.0 2.56e-01 70.1% 35.4%
3996344 263.1.1.1 a+b three layers › SRF-like › SRF-like › SRF-like › SRF-TF 0.52 35.0 3.67e-01 76.1% 76.7%
5079724 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.52 39.0 3.46e-01 83.6% 83.8%
3605264 2007.2.3.9 a/b three-layered sandwiches › Flavodoxin-like › Flavoproteins/Phosphotyrosine protein phosphatases-like › (Phosphotyrosine protein) phosphatases II › PTPlike_phytase 0.51 44.0 2.82e-01 98.5% 89.3%