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ERMGT119_2_scaffold_6_prodigal-single.1__X__X__00062

Bact-Vir

ERMGT119_2_scaffold_6_prodigal-single.1__X__X__00062

Identity

Kingdom:
phage

Quality

87.5 mean pLDDT

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 22-162
PDB
CATH (11)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3hk4A00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.58 37.0 3.99e-01 77.3% 74.6%
7pkwA01 3.10.450.540 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.57 30.0 3.45e-01 91.5% 68.0%
3ec9A00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.55 37.0 3.89e-01 78.7% 74.4%
3bf2A00 3.30.160.150 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Lipoprotein like domain 0.54 42.0 4.50e-01 94.3% 94.4%
3ff2A00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.53 35.0 3.82e-01 80.1% 80.3%
5cxoB00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.53 36.0 3.72e-01 80.9% 72.4%
3soyA00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.52 36.0 3.60e-01 77.3% 68.3%
3bb9B00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.52 37.0 3.92e-01 83.0% 82.4%
4h3uA00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.51 37.0 3.90e-01 82.3% 81.5%
3hzpA00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.51 35.0 3.67e-01 80.9% 76.4%
3d9rB00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.51 36.0 3.68e-01 80.9% 75.2%
ECOD (21)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
5018714 375.1.1.0 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.70 30.0 4.51e-01 79.4% 93.3%
3451695 330.1.1.0 a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like 0.67 43.0 5.18e-01 87.2% 98.9%
3425790 243.3.1.19 a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin › DUF3615 0.67 33.0 3.99e-01 92.2% 70.5%
3881865 330.1.1.26 a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like › DSRM_RDM1 0.59 41.0 4.44e-01 89.4% 83.3%
4096366 330.6.1.1 a+b two layers › dsRBD-like › 2-isopropylmalate synthase LeuA, allosteric (dimerisation) domain › 2-isopropylmalate synthase LeuA, allosteric (dimerisation) domain › LeuA_dimer 0.58 41.0 4.37e-01 83.0% 81.6%
3588473 243.1.1.17 a+b two layers › Cystatin-like › NTF2-like › NTF2-like › TpcC 0.56 33.0 3.66e-01 83.7% 73.1%
3226411 243.1.1.82 a+b two layers › Cystatin-like › NTF2-like › NTF2-like › PF26529 0.54 38.0 3.79e-01 77.3% 68.7%
3407993 243.1.1.40 a+b two layers › Cystatin-like › NTF2-like › NTF2-like › NXF_NTF2 0.53 40.0 3.69e-01 92.9% 61.7%
3230449 243.1.1.82 a+b two layers › Cystatin-like › NTF2-like › NTF2-like › PF26529 0.53 37.0 3.61e-01 78.0% 65.2%
4162701 243.1.1.76 a+b two layers › Cystatin-like › NTF2-like › NTF2-like › PF25976 0.53 35.0 3.78e-01 85.1% 79.2%
4169235 330.6.1.1 a+b two layers › dsRBD-like › 2-isopropylmalate synthase LeuA, allosteric (dimerisation) domain › 2-isopropylmalate synthase LeuA, allosteric (dimerisation) domain › LeuA_dimer 0.52 42.0 4.52e-01 87.2% 95.9%
3974899 243.1.1.28 a+b two layers › Cystatin-like › NTF2-like › NTF2-like › DUF4440 0.52 36.0 3.57e-01 77.3% 66.9%
1688901 243.1.1.18 a+b two layers › Cystatin-like › NTF2-like › NTF2-like › SnoaL_2 0.52 35.0 3.72e-01 80.9% 75.8%
3588474 243.1.1.17 a+b two layers › Cystatin-like › NTF2-like › NTF2-like › TpcC 0.52 36.0 3.87e-01 87.9% 82.5%
3838697 7503.1.1.0 a/b three-layered sandwiches › TolB, N-terminal domain › TolB, N-terminal domain › TolB, N-terminal domain 0.52 41.0 3.75e-01 83.7% 90.8%
3818687 243.1.1.49 a+b two layers › Cystatin-like › NTF2-like › NTF2-like › DUF2358 0.51 37.0 3.74e-01 78.7% 72.4%
6390 243.1.1.25 a+b two layers › Cystatin-like › NTF2-like › NTF2-like › SnoaL_3 0.51 36.0 3.89e-01 83.7% 85.7%
3591282 243.1.1.0 a+b two layers › Cystatin-like › NTF2-like › NTF2-like 0.51 34.0 3.72e-01 81.6% 81.5%
5022156 243.1.1.25 a+b two layers › Cystatin-like › NTF2-like › NTF2-like › SnoaL_3 0.51 33.0 3.42e-01 77.3% 67.4%
None 0.50 38.0 2.93e-01 80.1% 65.4%
5056410 2484.1.1.59 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › NurA 0.50 42.0 3.25e-01 90.1% 73.7%
D2 high residues 174-247
PDB
Domain cluster: representative
CATH (39)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2ckzA01 6.10.140.870 Special › Helix non-globular › Helix Hairpins › 0.77 31.0 3.78e-01 89.2% 56.2%
2no4A02 1.10.150.240 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Putative phosphatase; domain 2 0.73 41.0 4.13e-01 75.7% 56.0%
3s6jE02 1.10.150.240 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Putative phosphatase; domain 2 0.71 39.0 4.10e-01 71.6% 58.0%
1nt2B02 1.10.287.660 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Helix hairpin bin 0.71 38.0 4.06e-01 73.0% 59.7%
3f51C00 1.10.260.40 Mainly Alpha › Orthogonal Bundle › 434 Repressor (Amino-terminal Domain) › lambda repressor-like DNA-binding domains 0.69 53.0 4.91e-01 81.1% 67.8%
3axjB02 1.20.58.200 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Translin; domain 2 0.65 36.0 3.44e-01 71.6% 47.1%
3keyA01 1.10.10.1080 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Stn1, N-terminal wHTH domain 0.65 37.0 3.57e-01 82.4% 48.3%
3fyaB00 1.10.260.40 Mainly Alpha › Orthogonal Bundle › 434 Repressor (Amino-terminal Domain) › lambda repressor-like DNA-binding domains 0.65 51.0 5.07e-01 85.1% 83.1%
3ilkA02 1.10.8.590 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › 0.64 53.0 5.50e-01 94.6% 97.1%
3b7hA00 1.10.260.40 Mainly Alpha › Orthogonal Bundle › 434 Repressor (Amino-terminal Domain) › lambda repressor-like DNA-binding domains 0.63 50.0 5.01e-01 86.5% 82.9%
3buxB01 1.20.930.20 Mainly Alpha › Up-down Bundle › Transcription Elongation Factor S-II; Chain A › Adaptor protein Cbl, N-terminal domain 0.63 56.0 4.59e-01 95.9% 69.0%
1ug2A01 1.10.10.60 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like 0.63 31.0 3.58e-01 85.1% 65.4%
6ynwH01 1.20.20.10 Mainly Alpha › Up-down Bundle › F1FO ATP Synthase › F1F0 ATP synthase subunit C 0.62 38.0 3.89e-01 73.0% 62.2%
1x57A00 1.10.260.40 Mainly Alpha › Orthogonal Bundle › 434 Repressor (Amino-terminal Domain) › lambda repressor-like DNA-binding domains 0.61 48.0 4.52e-01 85.1% 79.1%
6n8eA02 3.30.559.30 Alpha Beta › 2-Layer Sandwich › Chloramphenicol Acetyltransferase › Nonribosomal peptide synthetase, condensation domain 0.61 46.0 3.20e-01 82.4% 76.5%
3natA01 3.40.50.11250 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Protein of unknown function DUF3013 0.61 51.0 4.04e-01 90.5% 72.8%
2g8lA02 1.10.285.20 Mainly Alpha › Orthogonal Bundle › Glutamate Dehydrogenase; Chain A, domain 3 › Uncharacterised protein PF01937, DUF89, domain 2 0.60 42.0 4.42e-01 85.1% 81.5%
3nz4B03 1.10.274.20 Mainly Alpha › Orthogonal Bundle › Enzyme I; Chain A, domain 2 › Phenylalanine ammonia-lyase 1; domain 3 0.60 42.0 3.80e-01 74.3% 99.0%
3e3vA03 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.60 30.0 3.36e-01 70.3% 60.7%
2yqzA02 1.10.8.900 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › 0.59 41.0 4.33e-01 73.0% 92.6%
1binA00 1.10.490.10 Mainly Alpha › Orthogonal Bundle › Globin-like › Globins 0.59 45.0 3.63e-01 82.4% 44.1%
2ic6A00 1.20.58.90 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.57 39.0 4.07e-01 71.6% 84.5%
2xokP00 1.20.20.10 Mainly Alpha › Up-down Bundle › F1FO ATP Synthase › F1F0 ATP synthase subunit C 0.57 36.0 3.63e-01 74.3% 63.5%
3nrkA01 1.10.4030.10 Mainly Alpha › Orthogonal Bundle › Triger factor/SurA peptide-binding fold › Porin chaperone SurA, peptide-binding domain 0.57 46.0 3.46e-01 91.9% 41.6%
2j9wB00 1.20.120.1130 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Vps28 C-terminal domain 0.56 47.0 4.26e-01 90.5% 78.8%
6qumQ00 1.20.20.10 Mainly Alpha › Up-down Bundle › F1FO ATP Synthase › F1F0 ATP synthase subunit C 0.56 38.0 3.82e-01 70.3% 98.6%
2x2vA00 1.20.20.10 Mainly Alpha › Up-down Bundle › F1FO ATP Synthase › F1F0 ATP synthase subunit C 0.55 37.0 3.90e-01 70.3% 76.5%
1tdzA02 1.10.8.50 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › 0.55 47.0 3.85e-01 94.6% 55.2%
4fdyA01 1.10.530.10 Mainly Alpha › Orthogonal Bundle › Lysozyme › 0.55 45.0 3.52e-01 90.5% 46.0%
2i53A01 1.10.472.10 Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › Cyclin-like 0.54 47.0 3.77e-01 94.6% 53.8%
2rdcA00 1.10.287.800 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › protein ne1242 0.53 41.0 3.38e-01 82.4% 47.4%
1k32A03 3.30.750.44 Alpha Beta › 2-Layer Sandwich › Transcription Regulator spoIIAA › 0.53 43.0 4.42e-01 90.5% 93.1%
2l3nA00 1.10.1050.20 Mainly Alpha › Orthogonal Bundle › Ribosomal Protein S4 Delta 41; Chain A, domain 1 › 0.53 38.0 3.38e-01 75.7% 80.8%
2c0uA03 1.20.140.10 Mainly Alpha › Up-down Bundle › Butyryl-CoA Dehydrogenase, subunit A; domain 3 › Butyryl-CoA Dehydrogenase, subunit A, domain 3 0.52 43.0 3.38e-01 94.6% 62.1%
3l8rA00 1.20.58.80 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Phosphotransferase system, lactose/cellobiose-type IIA subunit 0.52 46.0 4.17e-01 100.0% 94.1%
4v1gA00 1.20.20.10 Mainly Alpha › Up-down Bundle › F1FO ATP Synthase › F1F0 ATP synthase subunit C 0.51 37.0 3.52e-01 75.7% 70.6%
3cxbA03 1.10.1740.30 Mainly Alpha › Orthogonal Bundle › Rna Polymerase Sigma Factor; Chain: A › Secreted effector protein SifA helical domain 0.51 41.0 4.03e-01 87.8% 85.2%
3d6jA02 1.10.150.240 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Putative phosphatase; domain 2 0.50 35.0 3.70e-01 73.0% 95.5%
4ioeA00 1.10.287.850 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › HP0062-like domain 0.50 35.0 3.28e-01 73.0% 60.9%
ECOD (28)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4003837 4970.1.1.0 alpha bundles › fingers domain in bacteriophage RB69-like DNA polymerase I › fingers domain in bacteriophage RB69-like DNA polymerase I › fingers domain in bacteriophage RB69-like DNA polymerase I 0.70 41.0 3.67e-01 89.2% 44.0%
3421392 109.4.1.450 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › DUF247 0.67 57.0 3.76e-01 93.2% 40.9%
5048247 632.1.1.3 alpha bundles › immunoglobulin/albumin-binding domain-like › Families 57/38 glycoside transferase middle domain › Families 57/38 glycoside transferase middle domain › Alpha-mann_mid 0.65 60.0 5.35e-01 98.6% 89.0%
3801730 1128.1.1.12 alpha bundles › LYR protein › LYR protein › LYR protein › RH_dom 0.65 59.0 5.28e-01 98.6% 87.0%
1916705 101.1.4.18 alpha arrays › HTH › HTH › tetra-helical, lambda repressor-like › HTH_31 0.64 49.0 4.86e-01 81.1% 80.3%
3293396 109.4.1.450 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › DUF247 0.64 57.0 3.68e-01 98.6% 39.2%
3444874 3788.1.1.14 alpha bundles › Viral accessory protein x (Vpx) / viral protein r (Vpr) › Viral accessory protein x (Vpx) / viral protein r (Vpr) › Viral accessory protein x (Vpx) / viral protein r (Vpr) › DUF247 0.63 52.0 5.00e-01 90.5% 87.1%
4031703 101.1.4.17 alpha arrays › HTH › HTH › tetra-helical, lambda repressor-like › HTH_26 0.63 49.0 5.04e-01 83.8% 88.6%
4946748 1075.1.2.0 alpha bundles › Type II ABC exporter transmembrane domain fold › Type II ABC exporter transmembrane domain-related › MacB transmembrane domain 0.61 45.0 3.37e-01 78.4% 81.1%
3824261 143.1.1.2 alpha arrays › PABP domain-like › PABC(PABP) domain › PABC(PABP) domain › PABC_AtC3H46 0.60 42.0 4.47e-01 83.8% 83.1%
3633174 604.1.1.55 alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat › RasGAP_C 0.59 56.0 4.97e-01 100.0% 88.0%
3541873 3755.3.1.297 alpha bundles › YscO-like › CT398 helical hairpin › CT398 helical hairpin › KIF9 0.59 44.0 3.52e-01 78.4% 98.6%
3714091 632.11.1.0 alpha bundles › immunoglobulin/albumin-binding domain-like › AF1782-like › AF1782-like 0.59 47.0 4.77e-01 87.8% 100.0%
5006542 192.8.1.0 alpha bundles › Long alpha-hairpin › Eukaryotic DNA topoisomerase I, dispensable insert domain › Eukaryotic DNA topoisomerase I, dispensable insert domain 0.59 36.0 3.98e-01 71.6% 76.7%
4975282 545.1.2.0 alpha bundles › Gametocyte protein Pfg27-related › Gametocyte protein Pfg27-related › Sporozoite protein UIS3 soluble domain 0.58 38.0 3.71e-01 71.6% 61.3%
4297295 632.7.1.0 alpha bundles › immunoglobulin/albumin-binding domain-like › Heat shock protein 70kD (HSP70), C-terminal subdomain › Heat shock protein 70kD (HSP70), C-terminal subdomain 0.58 51.0 5.13e-01 100.0% 98.7%
3755586 3291.1.1.118 alpha bundles › Charged multivesicular body protein 3 (CHMP3)-related › Charged multivesicular body protein 3 (CHMP3)-related › Charged multivesicular body protein 3 (CHMP3)-related › KIF9 0.57 42.0 3.34e-01 77.0% 92.1%
5080445 2006.1.1.18 a/b three-layered sandwiches › HAD domain-like › HAD domain-related › HAD-like › HAD_2 0.57 41.0 2.95e-01 78.4% 47.9%
4661100 6056.1.1.2 alpha arrays › SP1917-like › SP1917-like › SP1917-like › PrmC_N 0.57 44.0 4.35e-01 85.1% 87.5%
4945693 601.28.1.0 alpha bundles › Four-helical up-and-down bundle › VPS28 C-terminal domain-like › VPS28 C-terminal domain-like 0.57 48.0 4.27e-01 93.2% 73.3%
4682059 166.1.1.1 alpha superhelices › 1-deoxy-D-xylulose-5-phosphate reductoisomerase-C › 1-deoxy-D-xylulose-5-phosphate reductoisomerase-C › 1-deoxy-D-xylulose-5-phosphate reductoisomerase-C › DXPR_C 0.56 42.0 3.96e-01 89.2% 64.5%
4573573 166.1.1.1 alpha superhelices › 1-deoxy-D-xylulose-5-phosphate reductoisomerase-C › 1-deoxy-D-xylulose-5-phosphate reductoisomerase-C › 1-deoxy-D-xylulose-5-phosphate reductoisomerase-C › DXPR_C 0.56 42.0 4.00e-01 89.2% 66.7%
5006225 5059.1.1.1 alpha bundles › Drug/Metabolite transporter › Drug/Metabolite transporter › Drug/Metabolite transporter › EamA 0.55 42.0 2.91e-01 81.1% 76.6%
4125089 4044.1.1.1 alpha bundles › Helical bundle domain in prismane-like proteins › Helical bundle domain in prismane-like proteins › Helical bundle domain in prismane-like proteins › Prismane 0.54 46.0 3.88e-01 100.0% 60.0%
5062478 604.12.1.0 alpha bundles › Spectrin repeat-like › MIT domain › MIT domain 0.53 48.0 4.55e-01 100.0% 91.1%
4096174 166.1.1.1 alpha superhelices › 1-deoxy-D-xylulose-5-phosphate reductoisomerase-C › 1-deoxy-D-xylulose-5-phosphate reductoisomerase-C › 1-deoxy-D-xylulose-5-phosphate reductoisomerase-C › DXPR_C 0.53 39.0 3.70e-01 89.2% 63.8%
5014572 2.21.1.3 beta barrels › OB-fold › Small protein B (SmpB) › Small protein B (SmpB) › HTH_OrfB_IS605 0.52 37.0 2.82e-01 71.6% 69.7%
3300274 143.1.1.2 alpha arrays › PABP domain-like › PABC(PABP) domain › PABC(PABP) domain › PABC_AtC3H46 0.52 36.0 3.88e-01 83.8% 83.1%