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ERMGT119_2_scaffold_6_prodigal-single.1__X__X__00114
Bact-VirERMGT119_2_scaffold_6_prodigal-single.1__X__X__00114
Identity
- Kingdom:
- phage
Quality
73.9
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 21-70
Domain cluster:
representative
CATH (25)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3ejbH02 | 1.10.630.10 | Mainly Alpha › Orthogonal Bundle › Cytochrome p450 › Cytochrome P450 | 0.67 | 51.0 | 3.26e-01 | 86.0% | 24.0% |
| 1s2oA02 | 3.90.1070.10 | Alpha Beta › Alpha-Beta Complex › Hypothetical Protein Ta0175; Chain: A, domain 2 › | 0.64 | 48.0 | 4.32e-01 | 98.0% | 57.7% |
| 2cpxA01 | 3.30.70.330 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › RRM (RNA recognition motif) domain | 0.60 | 47.0 | 4.16e-01 | 98.0% | 58.2% |
| 4mtnA01 | 3.30.1480.10 | Alpha Beta › 2-Layer Sandwich › N Utilization Substance Protein A; Chain:P; domain 4 › NusA, N-terminal domain | 0.58 | 47.0 | 3.99e-01 | 98.0% | 65.3% |
| 1vtnC00 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.56 | 40.0 | 3.37e-01 | 84.0% | 54.9% |
| 3im9A02 | 3.30.70.250 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Malonyl-CoA ACP transacylase, ACP-binding | 0.55 | 40.0 | 3.65e-01 | 94.0% | 55.4% |
| 2kl8A00 | 3.30.70.600 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Ribosomal protein S10 | 0.55 | 43.0 | 3.71e-01 | 96.0% | 51.8% |
| 6zd1A01 | 1.10.132.70 | Mainly Alpha › Orthogonal Bundle › Topoisomerase I; Chain A, domain 4 › | 0.54 | 37.0 | 2.77e-01 | 78.0% | 75.2% |
| 5k9fA00 | 3.30.70.100 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.53 | 44.0 | 3.62e-01 | 100.0% | 48.5% |
| 3i24B00 | 3.30.428.10 | Alpha Beta › 2-Layer Sandwich › HIT family, subunit A › HIT-like | 0.53 | 43.0 | 3.25e-01 | 98.0% | 46.8% |
| 3etvA02 | 1.20.58.2230 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Retrograde transport protein Dsl1, N-terminal domain | 0.52 | 37.0 | 2.53e-01 | 82.0% | 36.8% |
| 2oikA00 | 3.30.428.10 | Alpha Beta › 2-Layer Sandwich › HIT family, subunit A › HIT-like | 0.52 | 43.0 | 3.25e-01 | 100.0% | 46.8% |
| 1uw4A00 | 3.30.70.330 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › RRM (RNA recognition motif) domain | 0.52 | 41.0 | 3.53e-01 | 98.0% | 52.7% |
| 2mbfA01 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.52 | 36.0 | 3.12e-01 | 78.0% | 63.9% |
| 2zdiB00 | 1.10.287.370 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › | 0.52 | 39.0 | 3.08e-01 | 82.0% | 38.7% |
| 1x7vA00 | 3.30.70.100 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.52 | 43.0 | 3.54e-01 | 100.0% | 50.0% |
| 4nb5B01 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.52 | 38.0 | 3.32e-01 | 84.0% | 54.1% |
| 2pgcC01 | 3.30.70.100 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.52 | 42.0 | 3.52e-01 | 98.0% | 55.7% |
| 3p0tA00 | 3.30.428.10 | Alpha Beta › 2-Layer Sandwich › HIT family, subunit A › HIT-like | 0.51 | 41.0 | 3.18e-01 | 100.0% | 44.9% |
| 2joeA01 | 3.30.1830.10 | Alpha Beta › 2-Layer Sandwich › YehR-like fold › YehR-like | 0.51 | 40.0 | 3.19e-01 | 98.0% | 39.8% |
| 2f2eA01 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.51 | 37.0 | 3.23e-01 | 84.0% | 72.5% |
| 1j4wA01 | 3.30.1370.10 | Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S8; Chain: A, domain 1 › K Homology domain, type 1 | 0.51 | 42.0 | 3.79e-01 | 98.0% | 66.2% |
| 1u02A02 | 3.30.70.1020 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Trehalose-6-phosphate phosphatase related protein; domain 2 | 0.51 | 37.0 | 3.39e-01 | 98.0% | 55.3% |
| 4lrjA01 | 3.30.200.20 | Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 | 0.50 | 37.0 | 3.46e-01 | 94.0% | 60.3% |
| 2hnkA00 | 3.40.50.150 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 | 0.50 | 42.0 | 2.77e-01 | 100.0% | 23.6% |
ECOD (23)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3930150 | 5001.1.1.66 ↗ | alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Srg | 0.62 | 50.0 | 3.23e-01 | 100.0% | 37.3% |
| 3636290 | 101.1.2.22 ↗ | alpha arrays › HTH › HTH › winged helix domain › PCI | 0.61 | 45.0 | 3.98e-01 | 84.0% | 56.2% |
| 4010835 | 192.29.1.0 ↗ | alpha bundles › Long alpha-hairpin › bMERB domain (bivalent Mical/EHBP Rab binding) › bMERB domain (bivalent Mical/EHBP Rab binding) | 0.60 | 34.0 | 3.54e-01 | 88.0% | 60.0% |
| 3603426 | 304.156.1.3 ↗ | a+b two layers › Alpha-beta plaits › DNA translocase FtsK N-terminal domain › DNA translocase FtsK N-terminal domain › DUF5402 | 0.58 | 47.0 | 3.93e-01 | 100.0% | 56.0% |
| 3486997 | 4955.1.1.0 ↗ | a+b two layers › permuted ferredoxin-like domain in yeast RNA-polymerase beta-prime subunit › permuted ferredoxin-like domain in yeast RNA-polymerase beta-prime subunit › permuted ferredoxin-like domain in yeast RNA-polymerase beta-prime subunit | 0.57 | 46.0 | 3.48e-01 | 100.0% | 35.6% |
| 4942898 | 312.1.1.2 ↗ | a+b three layers › HIT-like › HIT-related › HIT-related › HIT | 0.56 | 47.0 | 3.58e-01 | 98.0% | 51.2% |
| 3971897 | 312.1.1.0 ↗ | a+b three layers › HIT-like › HIT-related › HIT-related | 0.54 | 44.0 | 3.26e-01 | 98.0% | 41.9% |
| 4932610 | 312.1.1.2 ↗ | a+b three layers › HIT-like › HIT-related › HIT-related › HIT | 0.54 | 43.0 | 3.43e-01 | 100.0% | 52.8% |
| 3513861 | 304.162.1.0 ↗ | a+b two layers › Alpha-beta plaits › Competence or damage-inducible protein CinA middle domain › Competence or damage-inducible protein CinA middle domain | 0.53 | 42.0 | 3.72e-01 | 98.0% | 58.7% |
| 3326674 | 1.1.3.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › AbrB | 0.53 | 40.0 | 4.01e-01 | 94.0% | 98.2% |
| 3987497 | 312.1.1.2 ↗ | a+b three layers › HIT-like › HIT-related › HIT-related › HIT | 0.52 | 41.0 | 3.08e-01 | 98.0% | 41.9% |
| 146702 | 304.4.1.25 ↗ | a+b two layers › Alpha-beta plaits › Dimeric alpha+beta barrel › Dimeric alpha+beta barrel › DUF6854 | 0.52 | 42.0 | 3.48e-01 | 98.0% | 52.9% |
| 3498546 | 304.162.1.2 ↗ | a+b two layers › Alpha-beta plaits › Competence or damage-inducible protein CinA middle domain › Competence or damage-inducible protein CinA middle domain › FLAD1_M | 0.52 | 41.0 | 3.74e-01 | 100.0% | 64.0% |
| 140410 | 101.1.2.137 ↗ | alpha arrays › HTH › HTH › winged helix domain › OST-HTH | 0.52 | 36.0 | 3.30e-01 | 84.0% | 86.9% |
| 3260229 | 304.4.1.4 ↗ | a+b two layers › Alpha-beta plaits › Dimeric alpha+beta barrel › Dimeric alpha+beta barrel › ABM | 0.52 | 41.0 | 3.48e-01 | 100.0% | 49.5% |
| 3973859 | 312.1.1.2 ↗ | a+b three layers › HIT-like › HIT-related › HIT-related › HIT | 0.51 | 40.0 | 3.12e-01 | 100.0% | 42.8% |
| 4024124 | 148.1.3.40 ↗ | alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain › ORC5_lid | 0.51 | 34.0 | 2.53e-01 | 98.0% | 23.3% |
| 4927828 | 328.1.1.0 ↗ | a+b two layers › IF3-like › AlbA-like › AlbA-like | 0.51 | 43.0 | 3.54e-01 | 100.0% | 57.0% |
| 4938292 | 304.28.1.0 ↗ | a+b two layers › Alpha-beta plaits › Ferredoxin domains in multidrug efflux transporter › Multidrug efflux transporter AcrB pore domain | 0.51 | 40.0 | 3.48e-01 | 98.0% | 56.8% |
| 3492533 | 212.1.1.3 ↗ | a+b two layers › Ribosomal protein S5 domain 2-like › Ribosomal protein S5 domain 2-like › Ribosomal protein S5 domain 2-like › GHMP_kinases_N | 0.51 | 41.0 | 2.95e-01 | 98.0% | 29.7% |
| 3290370 | 2003.1.2.15 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain › FAD_binding_3 | 0.51 | 35.0 | 2.28e-01 | 72.0% | 46.2% |
| 1124924 | 304.4.1.4 ↗ | a+b two layers › Alpha-beta plaits › Dimeric alpha+beta barrel › Dimeric alpha+beta barrel › ABM | 0.50 | 40.0 | 3.34e-01 | 100.0% | 46.7% |
| 3787273 | 2485.1.1.20 ↗ | a+b three layers › Thioredoxin-like › Thioredoxin-like › Thioredoxin-like › Glrx-like | 0.50 | 34.0 | 3.07e-01 | 72.0% | 52.6% |