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ERMGT119_2_scaffold_6_prodigal-single.1__X__X__00116

Bact-Vir

ERMGT119_2_scaffold_6_prodigal-single.1__X__X__00116

Identity

Kingdom:
phage

Quality

89.1 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 3-60
PDB
Domain cluster: representative
CATH (32)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2jx8A00 2.20.70.10 Mainly Beta › Single Sheet › Ubiquitin Ligase Nedd4; Chain: W; › 0.62 37.0 4.07e-01 75.9% 74.5%
3cz8A02 3.10.50.10 Alpha Beta › Roll › Chitinase A; domain 3 › 0.62 41.0 4.22e-01 96.6% 71.9%
1goiA02 3.10.50.10 Alpha Beta › Roll › Chitinase A; domain 3 › 0.61 40.0 3.58e-01 96.6% 44.4%
5jh8A02 3.10.50.10 Alpha Beta › Roll › Chitinase A; domain 3 › 0.61 41.0 3.96e-01 96.6% 61.2%
3e0rB01 3.10.180.10 Alpha Beta › Roll › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase; domain 1 › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase, domain 1 0.60 41.0 3.29e-01 98.3% 35.3%
6rwcA02 2.20.25.590 Mainly Beta › Single Sheet › N-terminal domain of TfIIb › 0.59 37.0 4.15e-01 91.4% 94.9%
3g12B00 3.10.180.10 Alpha Beta › Roll › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase; domain 1 › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase, domain 1 0.59 39.0 3.19e-01 96.6% 34.5%
3qokA02 3.10.50.10 Alpha Beta › Roll › Chitinase A; domain 3 › 0.59 42.0 3.63e-01 96.6% 46.4%
3oajA02 3.10.180.10 Alpha Beta › Roll › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase; domain 1 › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase, domain 1 0.59 41.0 3.14e-01 100.0% 29.9%
1owqA02 3.10.50.10 Alpha Beta › Roll › Chitinase A; domain 3 › 0.58 35.0 3.44e-01 96.6% 50.0%
1rl2A01 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.58 34.0 3.51e-01 77.6% 58.9%
2gnxA02 3.30.450.240 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › 0.57 47.0 3.96e-01 98.3% 100.0%
2x3lA01 3.90.1150.150 Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › 0.57 48.0 4.05e-01 98.3% 60.0%
1zxuA00 2.40.160.200 Mainly Beta › Beta Barrel › Porin › LURP1-related 0.56 45.0 3.37e-01 93.1% 88.3%
1twfI01 2.20.25.10 Mainly Beta › Single Sheet › N-terminal domain of TfIIb › 0.55 37.0 4.05e-01 91.4% 89.1%
3k1lA02 3.30.457.30 Alpha Beta › 2-Layer Sandwich › Copper Amine Oxidase; Chain A, domain 1 › 0.54 42.0 3.74e-01 89.7% 83.3%
3ajvC02 3.40.1350.10 Alpha Beta › 3-Layer(aba) Sandwich › Trna Endonuclease; Chain: A, domain 1 › 0.54 42.0 3.75e-01 93.1% 76.9%
2p25A01 3.10.180.10 Alpha Beta › Roll › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase; domain 1 › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase, domain 1 0.53 38.0 3.05e-01 94.8% 37.0%
2czrA01 3.40.1350.70 Alpha Beta › 3-Layer(aba) Sandwich › Trna Endonuclease; Chain: A, domain 1 › TBP-interacting protein, N-terminal domain 0.53 44.0 3.67e-01 96.6% 59.4%
2ra2B00 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.53 35.0 3.56e-01 93.1% 69.0%
6grrB01 3.30.457.10 Alpha Beta › 2-Layer Sandwich › Copper Amine Oxidase; Chain A, domain 1 › Copper amine oxidase-like, N-terminal domain 0.52 42.0 3.95e-01 96.6% 78.5%
3ef2A02 3.30.460.70 Alpha Beta › 2-Layer Sandwich › Beta Polymerase; domain 2 › 0.52 41.0 3.12e-01 86.2% 87.0%
3auxA00 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.52 43.0 2.72e-01 96.6% 16.7%
1cdwA02 3.30.310.10 Alpha Beta › 2-Layer Sandwich › TATA-Binding Protein › TATA-Binding Protein 0.52 40.0 3.68e-01 93.1% 79.1%
2fkiA00 3.90.1150.30 Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › 0.51 43.0 3.47e-01 96.6% 71.2%
3ihpA01 3.30.40.10 Alpha Beta › 2-Layer Sandwich › Herpes Virus-1 › Zinc/RING finger domain, C3HC4 (zinc finger) 0.51 41.0 3.49e-01 100.0% 81.9%
3facA00 2.170.150.70 Mainly Beta › Beta Complex › Metal Binding Protein, Guanine Nucleotide Exchange Factor; Chain A › 0.51 35.0 2.95e-01 100.0% 38.5%
3qf7A01 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.51 40.0 2.68e-01 94.8% 20.7%
3ghjA00 3.10.180.10 Alpha Beta › Roll › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase; domain 1 › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase, domain 1 0.51 38.0 3.12e-01 98.3% 41.4%
3mc6A02 3.90.1150.10 Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › Aspartate Aminotransferase, domain 1 0.51 42.0 3.31e-01 96.6% 49.6%
3hkoA02 1.10.510.10 Mainly Alpha › Orthogonal Bundle › Transferase(Phosphotransferase); domain 1 › Transferase(Phosphotransferase) domain 1 0.50 42.0 2.90e-01 100.0% 26.5%
6gpkA02 3.90.25.10 Alpha Beta › Alpha-Beta Complex › UDP-galactose 4-epimerase; domain 1 › UDP-galactose 4-epimerase, domain 1 0.50 38.0 3.24e-01 87.9% 95.4%
ECOD (66)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4028035 64.1.1.0 beta meanders › WW domain-like › WW domain › WW domain 0.73 38.0 4.55e-01 70.7% 80.0%
3561493 64.1.1.0 beta meanders › WW domain-like › WW domain › WW domain 0.72 37.0 4.59e-01 70.7% 80.0%
3892826 64.1.1.7 beta meanders › WW domain-like › WW domain › WW domain › WW_USP8 0.68 36.0 3.26e-01 74.1% 36.3%
3844867 64.1.1.7 beta meanders › WW domain-like › WW domain › WW domain › WW_USP8 0.67 40.0 4.69e-01 75.9% 97.1%
3190898 64.1.1.1 beta meanders › WW domain-like › WW domain › WW domain › WW 0.66 44.0 4.97e-01 93.1% 100.0%
3228049 64.1.1.1 beta meanders › WW domain-like › WW domain › WW domain › WW 0.66 35.0 4.17e-01 70.7% 80.0%
3547695 3470.1.1.0 extended segments › Glycophorin-A transmembrane domain › Glycophorin-A transmembrane domain › Glycophorin-A transmembrane domain 0.65 35.0 4.21e-01 77.6% 96.7%
3299616 64.1.1.1 beta meanders › WW domain-like › WW domain › WW domain › WW 0.63 35.0 4.01e-01 72.4% 75.0%
4024148 64.1.1.0 beta meanders › WW domain-like › WW domain › WW domain 0.62 37.0 4.43e-01 81.0% 94.3%
3472289 64.1.1.0 beta meanders › WW domain-like › WW domain › WW domain 0.62 37.0 4.38e-01 72.4% 91.4%
4937515 375.1.1.26 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › Rpr2 0.61 34.0 3.01e-01 77.6% 33.3%
4996608 2007.9.1.4 a/b three-layered sandwiches › Flavodoxin-like › Toll/Interleukin receptor TIR domain › Toll/Interleukin receptor TIR domain › TIR_2 0.61 41.0 2.87e-01 100.0% 20.0%
6501 284.2.1.0 a+b two layers › FKBP-like › Chitinase insertion domain › Chitinase insertion domain 0.61 40.0 3.54e-01 96.6% 44.3%
3497020 64.1.1.1 beta meanders › WW domain-like › WW domain › WW domain › WW 0.61 41.0 4.51e-01 89.7% 95.3%
3592215 64.1.1.0 beta meanders › WW domain-like › WW domain › WW domain 0.60 33.0 3.49e-01 72.4% 54.7%
3715063 64.1.1.0 beta meanders › WW domain-like › WW domain › WW domain 0.60 33.0 3.97e-01 72.4% 93.3%
3414906 375.1.1.148 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › RPA_interact_C 0.60 43.0 4.68e-01 84.5% 97.8%
2354 64.1.1.1 beta meanders › WW domain-like › WW domain › WW domain › WW 0.60 41.0 4.40e-01 89.7% 91.3%
3225850 284.2.1.0 a+b two layers › FKBP-like › Chitinase insertion domain › Chitinase insertion domain 0.60 37.0 3.89e-01 96.6% 70.0%
4028185 375.1.1.19 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › RNA_POL_M_15KD 0.60 42.0 4.50e-01 91.4% 88.0%
3356481 386.1.1.117 few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › DUF7028 0.60 45.0 4.10e-01 84.5% 60.2%
2105165 284.2.1.0 a+b two layers › FKBP-like › Chitinase insertion domain › Chitinase insertion domain 0.59 39.0 3.78e-01 96.6% 58.0%
3396514 386.1.1.259 few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › PF29169 0.59 37.0 4.13e-01 72.4% 82.2%
3928448 64.1.1.0 beta meanders › WW domain-like › WW domain › WW domain 0.59 42.0 4.61e-01 87.9% 97.8%
3661622 64.1.1.1 beta meanders › WW domain-like › WW domain › WW domain › WW 0.59 38.0 4.23e-01 84.5% 95.0%
3593875 375.1.1.0 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.59 43.0 4.44e-01 98.3% 81.8%
4218238 284.2.1.0 a+b two layers › FKBP-like › Chitinase insertion domain › Chitinase insertion domain 0.59 35.0 3.45e-01 89.7% 50.8%
3759995 386.1.1.0 few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers 0.58 43.0 2.80e-01 79.3% 24.2%
3841512 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.58 43.0 3.90e-01 79.3% 82.5%
3253246 64.1.1.0 beta meanders › WW domain-like › WW domain › WW domain 0.58 33.0 3.76e-01 75.9% 100.0%
3755591 386.1.1.0 few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers 0.58 41.0 4.02e-01 77.6% 75.4%
3910066 386.1.1.0 few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers 0.58 42.0 3.86e-01 79.3% 82.5%
3505640 375.1.1.19 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › RNA_POL_M_15KD 0.57 40.0 4.03e-01 98.3% 71.7%
3702861 375.1.1.19 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › RNA_POL_M_15KD 0.57 40.0 4.16e-01 98.3% 80.0%
3489460 64.1.1.0 beta meanders › WW domain-like › WW domain › WW domain 0.57 34.0 3.99e-01 70.7% 94.3%
4945596 4325.1.1.0 mixed a+b and a/b › YegP-like › YegP-like › YegP-like 0.57 34.0 3.74e-01 82.8% 71.1%
3935170 375.1.1.19 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › RNA_POL_M_15KD 0.57 37.0 4.08e-01 82.8% 86.7%
3500033 375.1.1.0 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.56 39.0 4.08e-01 96.6% 84.0%
5026482 2002.1.1.30 a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Glyco_hydro_18 0.56 38.0 2.35e-01 91.4% 11.2%
3189994 375.1.1.19 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › RNA_POL_M_15KD 0.56 40.0 3.51e-01 98.3% 48.9%
3265458 2004.1.1.81 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › GBP 0.56 48.0 3.01e-01 100.0% 19.4%
3268247 2004.1.1.0 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases 0.56 48.0 2.99e-01 100.0% 19.1%
3888040 386.1.1.0 few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers 0.56 43.0 4.04e-01 84.5% 88.6%
3605636 64.1.1.1 beta meanders › WW domain-like › WW domain › WW domain › WW 0.56 40.0 4.10e-01 82.8% 80.0%
3208203 375.1.1.19 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › RNA_POL_M_15KD 0.55 36.0 3.69e-01 84.5% 70.9%
3715229 64.1.1.0 beta meanders › WW domain-like › WW domain › WW domain 0.55 40.0 4.11e-01 84.5% 81.8%
3709555 64.1.1.1 beta meanders › WW domain-like › WW domain › WW domain › WW 0.54 38.0 3.91e-01 75.9% 78.2%
3935682 64.1.1.1 beta meanders › WW domain-like › WW domain › WW domain › WW 0.54 33.0 3.35e-01 74.1% 58.3%
3985807 375.1.1.130 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › Zn_Tnp_IS1 0.54 34.0 3.72e-01 77.6% 82.2%
4941675 2004.1.1.198 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › AAA_23 0.54 42.0 2.58e-01 96.6% 13.8%
4972588 2004.1.1.293 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › AAA_15 0.54 43.0 2.80e-01 96.6% 17.8%
3706282 376.1.3.0 few secondary structure elements › RING/U-box-like › RING/U-box-like › FYVE/PHD zinc finger 0.54 36.0 2.94e-01 93.1% 33.3%
3963560 6043.1.1.0 a+b two layers › yfeY-like › yfeY-like › yfeY-like 0.53 37.0 3.72e-01 96.6% 73.3%
3597992 64.1.1.0 beta meanders › WW domain-like › WW domain › WW domain 0.53 37.0 3.87e-01 77.6% 78.2%
4027092 7502.1.1.0 a/b three-layered sandwiches › Anticodon-binding domain of Class II aaRS › Anticodon-binding domain of Class II aaRS › Anticodon-binding domain of Class II aaRS 0.53 43.0 3.56e-01 91.4% 62.7%
4999659 375.1.1.0 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.53 37.0 3.95e-01 81.0% 89.6%
3576759 375.1.1.0 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.52 40.0 3.83e-01 87.9% 84.3%
3263507 3409.1.1.3 a+b duplicates or obligate multimers › Vacuolar protein sorting-associated protein 30 BARA domain › Vacuolar protein sorting-associated protein 30 BARA domain › Vacuolar protein sorting-associated protein 30 BARA domain › ATG14 0.52 43.0 3.34e-01 100.0% 95.3%
5076987 2004.1.1.308 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › AAA_21 0.52 42.0 2.72e-01 96.6% 18.4%
5008249 304.131.1.0 a+b two layers › Alpha-beta plaits › Phosphonoacetate hydrolase insertion domain › Phosphonoacetate hydrolase insertion domain 0.52 41.0 3.30e-01 94.8% 54.8%
4946684 2004.1.1.308 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › AAA_21 0.52 41.0 2.64e-01 96.6% 16.6%
5051008 873.1.1.0 a+b complex topology › H-NOX domain › H-NOX domain › H-NOX domain 0.51 42.0 3.15e-01 100.0% 46.3%
3595091 109.1.1.0 alpha superhelices › Repetitive alpha hairpins › Glutathione S-transferase (GST)-C › Glutathione S-transferase (GST)-C 0.51 44.0 3.13e-01 100.0% 51.6%
4960549 375.1.1.0 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.51 35.0 3.65e-01 86.2% 84.0%
2123 6.1.1.19 beta duplicates or obligate multimers › beta-Trefoil › beta-Trefoil › beta-Trefoil › RicinB_lectin_2 0.51 41.0 3.12e-01 89.7% 70.3%
5077639 2006.1.3.2 a/b three-layered sandwiches › HAD domain-like › HAD domain-related › Toprim domain › Toprim 0.50 39.0 3.03e-01 91.4% 72.7%
D2 high residues 63-116
PDB
Domain cluster: representative
CATH (12)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
4l69A02 3.40.1280.10 Alpha Beta › 3-Layer(aba) Sandwich › Alpha/beta knot › SPOUT methyltransferase, trefoil knot domain 0.77 52.0 3.53e-01 70.4% 67.0%
3b0bC02 6.10.130.30 Special › Helix non-globular › GTP Cyclohydrolase I; Chain A, domain 1 › 0.73 50.0 5.56e-01 75.9% 90.7%
3v9rA00 1.10.20.10 Mainly Alpha › Orthogonal Bundle › Histone, subunit A › Histone, subunit A 0.69 58.0 4.88e-01 92.6% 55.7%
7tfmA01 1.10.1780.10 Mainly Alpha › Orthogonal Bundle › Double Clp-N motif › Clp, N-terminal domain 0.68 51.0 3.82e-01 81.5% 80.6%
4csrB00 1.10.20.10 Mainly Alpha › Orthogonal Bundle › Histone, subunit A › Histone, subunit A 0.68 53.0 4.62e-01 85.2% 63.4%
1ztdA00 1.10.1520.20 Mainly Alpha › Orthogonal Bundle › Ribonuclease iii, N-terminal Endonuclease Domain; Chain A › Ribonuclease III 0.67 49.0 3.78e-01 79.6% 88.0%
6azyA01 1.10.1780.10 Mainly Alpha › Orthogonal Bundle › Double Clp-N motif › Clp, N-terminal domain 0.66 50.0 3.79e-01 81.5% 79.4%
4hteA02 1.20.58.1740 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.64 56.0 4.33e-01 96.3% 49.6%
2rvqC01 1.10.20.10 Mainly Alpha › Orthogonal Bundle › Histone, subunit A › Histone, subunit A 0.63 48.0 4.36e-01 83.3% 64.5%
1r4vA00 1.10.20.10 Mainly Alpha › Orthogonal Bundle › Histone, subunit A › Histone, subunit A 0.58 46.0 3.47e-01 92.6% 55.0%
1a1wA00 1.10.533.10 Mainly Alpha › Orthogonal Bundle › Death Domain, Fas › Death Domain, Fas 0.52 38.0 3.44e-01 83.3% 89.2%
3ff5A00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.51 41.0 4.19e-01 94.4% 92.6%
ECOD (7)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3662905 101.1.1.29 alpha arrays › HTH › HTH › Three-helical HTH › Sigma70_r3 0.72 51.0 5.11e-01 94.4% 72.7%
5051016 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.67 54.0 4.98e-01 88.9% 75.7%
3619633 148.1.1.4 alpha arrays › Histone-like › Histone-related › Histone › CBFD_NFYB_HMF 0.66 59.0 4.86e-01 98.1% 90.5%
3696451 148.1.1.1 alpha arrays › Histone-like › Histone-related › Histone › Histone 0.66 55.0 4.01e-01 90.7% 62.8%
4026735 148.1.1.1 alpha arrays › Histone-like › Histone-related › Histone › Histone 0.61 54.0 4.23e-01 100.0% 75.7%
3995790 1075.1.2.12 alpha bundles › Type II ABC exporter transmembrane domain fold › Type II ABC exporter transmembrane domain-related › MacB transmembrane domain › EMP70 0.60 51.0 3.21e-01 96.3% 86.8%
3164286 3355.1.1.21 alpha complex topology › dicarboxylate/sodium symporter › dicarboxylate/sodium symporter › dicarboxylate/sodium symporter › Na_sulph_symp, CitMHS 0.54 47.0 2.81e-01 100.0% 67.1%