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ERMGT119_2_scaffold_6_prodigal-single.1__X__X__00130

Bact-Vir

ERMGT119_2_scaffold_6_prodigal-single.1__X__X__00130

Identity

Kingdom:
phage

Quality

76.0 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 10-69
PDB
Domain cluster: representative
CATH (15)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
5fbhA01 3.40.50.2300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator 0.64 45.0 2.91e-01 75.0% 86.7%
1cmjA00 1.10.630.10 Mainly Alpha › Orthogonal Bundle › Cytochrome p450 › Cytochrome P450 0.62 42.0 2.58e-01 71.7% 35.1%
4c3iG02 2.40.50.1060 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.58 41.0 3.15e-01 75.0% 41.7%
3ihmA01 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.57 47.0 3.24e-01 91.7% 93.5%
7o06C01 3.30.1470.10 Alpha Beta › 2-Layer Sandwich › Photosystem 1 Reaction Centre Subunit Ii; Chain: D; › Photosystem I PsaD, reaction center subunit II 0.57 42.0 3.75e-01 81.7% 100.0%
6njeA00 3.40.850.10 Alpha Beta › 3-Layer(aba) Sandwich › Kinesin › Kinesin motor domain 0.57 39.0 2.50e-01 71.7% 55.9%
3le4A00 2.20.70.10 Mainly Beta › Single Sheet › Ubiquitin Ligase Nedd4; Chain: W; › 0.56 38.0 3.93e-01 71.7% 94.5%
5cq2A02 2.20.70.10 Mainly Beta › Single Sheet › Ubiquitin Ligase Nedd4; Chain: W; › 0.55 35.0 3.85e-01 73.3% 90.7%
2h92A00 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.55 39.0 2.71e-01 76.7% 58.3%
1ju2A01 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.53 44.0 2.74e-01 90.0% 72.9%
4z32A01 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.53 37.0 3.20e-01 73.3% 78.1%
3vywA02 3.40.50.150 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 0.53 39.0 2.69e-01 81.7% 93.2%
1vx2I02 3.10.290.70 Alpha Beta › Roll › Structural Genomics Hypothetical 15.5 Kd Protein In mrcA-pckA Intergenic Region; Chain A › 0.52 40.0 3.34e-01 85.0% 70.8%
3we0A01 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.51 40.0 2.62e-01 86.7% 64.8%
3ihlB00 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.50 35.0 2.39e-01 73.3% 52.8%
ECOD (29)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3815071 2004.1.1.250 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Kinesin,Microtub_bd 0.79 43.0 2.42e-01 98.3% 5.8%
4345169 101.1.1.33 alpha arrays › HTH › HTH › Three-helical HTH 0.74 45.0 3.28e-01 71.7% 25.5%
3338669 64.1.1.1 beta meanders › WW domain-like › WW domain › WW domain › WW 0.71 32.0 3.42e-01 73.3% 49.1%
3619159 292.2.1.5 a+b two layers › RIP/Polo-box domain › Polo-box domain › Polo-box domain › Polo_box_3 0.69 44.0 3.68e-01 76.7% 41.1%
4386761 292.2.1.3 a+b two layers › RIP/Polo-box domain › Polo-box domain › Polo-box domain › Plk4_PB2 0.66 45.0 3.77e-01 71.7% 55.0%
3413714 4.1.1.7 beta barrels › SH3 › SH3 › SH3 › KOW,ribosomal_L24 0.64 45.0 3.02e-01 73.3% 54.1%
3610398 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.63 50.0 4.66e-01 96.7% 70.7%
5026054 2007.1.3.0 a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › CheY-like 0.62 38.0 2.55e-01 95.0% 15.7%
3301455 2484.1.1.109 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › bVLRF1 0.61 42.0 2.89e-01 70.0% 22.1%
4034336 4.8.1.13 beta barrels › SH3 › Chromo domain-like › Chromo domain-like › ComK 0.61 46.0 3.45e-01 80.0% 93.1%
3787279 633.23.1.9 alpha bundles › Bromodomain-like › Claudin › Claudin › SUR7 0.61 43.0 2.74e-01 76.7% 16.1%
3708672 101.1.9.0 alpha arrays › HTH › HTH › Putative DNA-binding domain 0.59 45.0 4.04e-01 91.7% 58.8%
4018269 633.1.1.0 alpha bundles › Bromodomain-like › Bromodomain › Bromodomain 0.59 47.0 3.29e-01 86.7% 55.9%
4948537 2004.1.1.198 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › AAA_23 0.58 42.0 2.53e-01 75.0% 14.2%
4375554 2002.1.1.0 a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels 0.57 47.0 2.79e-01 95.0% 94.9%
3912274 1170.1.1.1 beta barrels › IL8-related › IL8-related › IL8 › IL8 0.57 47.0 4.44e-01 86.7% 95.7%
3749416 2007.15.1.11 a/b three-layered sandwiches › Flavodoxin-like › N-deoxyribosyltransferase › N-deoxyribosyltransferase › MAP3K_TRAF_bd 0.57 42.0 2.61e-01 78.3% 18.8%
3722125 2003.1.2.18 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain 0.57 49.0 2.99e-01 95.0% 83.2%
5042381 2004.1.1.198 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › AAA_23 0.57 45.0 2.69e-01 85.0% 13.1%
3685043 2003.1.2.18 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain 0.56 41.0 2.85e-01 76.7% 25.3%
3976684 7089.1.1.0 a+b two layers › Methane monooxygenase hydroxylase, MmoD › Methane monooxygenase hydroxylase, MmoD › Methane monooxygenase hydroxylase, MmoD 0.56 40.0 3.58e-01 90.0% 56.2%
3291545 3859.1.1.0 alpha arrays › uncharacterized protein BT_1490 C-terminal domain › uncharacterized protein BT_1490 C-terminal domain › uncharacterized protein BT_1490 C-terminal domain 0.55 39.0 3.17e-01 76.7% 68.8%
4041632 2.1.1.15 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › tRNA_anti-codon 0.55 47.0 3.50e-01 100.0% 38.6%
3277795 241.11.1.1 a+b two layers › Type III secretory system chaperone-like › YjbR-like › YjbR-like › YjbR 0.54 40.0 3.10e-01 80.0% 56.3%
3388785 109.1.1.11 alpha superhelices › Repetitive alpha hairpins › Glutathione S-transferase (GST)-C › Glutathione S-transferase (GST)-C › Arc1p_N_like 0.54 37.0 2.83e-01 75.0% 42.4%
3596701 192.4.1.0 alpha bundles › Long alpha-hairpin › Ribosomal protein L29 (L29p) › Ribosomal protein L29 (L29p) 0.54 39.0 3.67e-01 86.7% 62.5%
3603146 2008.1.1.95 a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › DpnII 0.52 41.0 2.66e-01 85.0% 81.4%
3930235 304.48.1.1 a+b two layers › Alpha-beta plaits › Adenylyl and guanylyl cyclase catalytic domain-like › Adenylyl and guanylyl cyclase catalytic domain-like › RVT_1 0.52 45.0 2.93e-01 96.7% 51.3%
3987428 3843.1.1.0 alpha complex topology › NADH-quinone oxidoreductase subunit K › NADH-quinone oxidoreductase subunit K › NADH-quinone oxidoreductase subunit K 0.52 42.0 3.59e-01 96.7% 55.0%
D2 high residues 74-136
PDB
Domain cluster: representative
CATH (34)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
5ycqA00 2.30.30.390 Mainly Beta › Roll › SH3 type barrels. › Hemimethylated DNA-binding domain 0.66 55.0 5.24e-01 100.0% 77.9%
2jiiA01 3.30.200.20 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 0.64 45.0 3.74e-01 74.6% 80.0%
3urgA02 2.30.30.530 Mainly Beta › Roll › SH3 type barrels. › Calcium binding protein CcbP, beta-barrel domain 0.63 47.0 4.72e-01 81.0% 100.0%
1s68A02 3.30.470.30 Alpha Beta › 2-Layer Sandwich › D-amino Acid Aminotransferase; Chain A, domain 1 › DNA ligase/mRNA capping enzyme 0.62 42.0 3.49e-01 71.4% 92.0%
1x6oA02 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.61 46.0 4.36e-01 84.1% 97.5%
3j7aF02 2.40.50.740 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Ribosomal protein S4, central domain 0.60 36.0 3.85e-01 71.4% 70.6%
1vq8A01 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.60 38.0 3.60e-01 71.4% 51.3%
1rvjH02 3.90.50.10 Alpha Beta › Alpha-Beta Complex › Photosynthetic Reaction Center; Chain H, domain 2 › Photosynthetic Reaction Center, subunit H, domain 2 0.59 41.0 3.38e-01 76.2% 42.4%
1f9qD00 2.40.50.40 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.59 43.0 4.28e-01 81.0% 81.8%
6az1E02 2.40.50.740 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Ribosomal protein S4, central domain 0.58 35.0 3.77e-01 71.4% 70.6%
2ra2B00 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.57 44.0 4.58e-01 92.1% 96.6%
5f3yA05 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.57 49.0 4.61e-01 98.4% 94.8%
1khiA02 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.56 41.0 4.02e-01 85.7% 69.4%
1vwxY00 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.56 42.0 3.38e-01 84.1% 42.5%
2wweA01 3.30.1520.10 Alpha Beta › 2-Layer Sandwich › PX Domain › Phox-like domain 0.56 40.0 3.46e-01 77.8% 82.7%
3ol0B00 6.20.90.30 Special › Other non-globular › SH3 type barrels. › 0.56 33.0 3.70e-01 85.7% 87.8%
3qc2B00 2.115.10.20 Mainly Beta › 5 Propeller › Tachylectin-2; Chain A › Glycosyl hydrolase domain; family 43 0.55 42.0 2.73e-01 88.9% 80.7%
1yr2A02 2.130.10.120 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › Prolyl oligopeptidase, N-terminal domain 0.55 38.0 2.48e-01 74.6% 20.2%
2wfwB02 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.55 40.0 4.01e-01 81.0% 100.0%
5v6fA00 2.100.10.30 Mainly Beta › Aligned Prism › Vitelline Membrane Outer Layer Protein I, subunit A › Jacalin-like lectin domain 0.54 39.0 3.13e-01 77.8% 97.8%
2digA00 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.54 42.0 4.14e-01 87.3% 80.9%
3e0rA02 3.10.180.40 Alpha Beta › Roll › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase; domain 1 › C3-degrading proteinase like domains 0.53 35.0 2.96e-01 100.0% 36.4%
2mp1A00 2.40.50.40 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.53 40.0 3.83e-01 85.7% 71.4%
3ufiA01 2.60.40.2620 Mainly Beta › Sandwich › Immunoglobulin-like › Fimbrillin-like 0.52 35.0 2.77e-01 71.4% 89.5%
2cocA01 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.52 38.0 3.39e-01 82.5% 76.0%
2czoA00 3.30.1520.10 Alpha Beta › 2-Layer Sandwich › PX Domain › Phox-like domain 0.52 39.0 3.19e-01 84.1% 85.4%
3ml4C01 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.52 37.0 3.29e-01 82.5% 83.3%
3q9tA01 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.51 38.0 2.64e-01 84.1% 59.6%
2bmxB01 3.40.30.10 Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Glutaredoxin 0.51 36.0 2.71e-01 76.2% 50.6%
1v61A00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.51 38.0 3.11e-01 84.1% 63.6%
1xezA04 2.100.10.30 Mainly Beta › Aligned Prism › Vitelline Membrane Outer Layer Protein I, subunit A › Jacalin-like lectin domain 0.51 35.0 2.88e-01 74.6% 95.6%
2z9iC01 2.40.10.10 Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases 0.51 36.0 3.22e-01 74.6% 65.2%
6qj2A00 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.51 35.0 2.29e-01 74.6% 18.3%
2jh1A01 3.90.640.70 Alpha Beta › Alpha-Beta Complex › Actin; Chain A, domain 4 › 0.50 41.0 3.50e-01 93.7% 88.0%
ECOD (24)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4101476 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.69 60.0 5.73e-01 100.0% 93.3%
4100588 206.1.1.87 a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › Pkinase, RIO1 0.68 48.0 2.98e-01 74.6% 23.9%
3974654 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.65 55.0 5.16e-01 96.8% 82.5%
5048696 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.63 46.0 3.43e-01 79.4% 30.6%
3660755 4.8.1.21 beta barrels › SH3 › Chromo domain-like › Chromo domain-like › PTM_DIR17_Tudor 0.62 53.0 5.02e-01 96.8% 89.3%
3660244 4.1.1.141 beta barrels › SH3 › SH3 › SH3 › PTM_DIR17_Tudor 0.61 52.0 4.98e-01 96.8% 90.7%
3979842 4.1.1.45 beta barrels › SH3 › SH3 › SH3 › DUF903 0.59 44.0 4.58e-01 92.1% 94.5%
4968816 2.1.1.17 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › OB_aCoA_assoc 0.58 42.0 3.71e-01 77.8% 53.7%
3507420 2.1.1.0 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.57 42.0 3.80e-01 84.1% 93.7%
3482049 220.1.1.0 beta barrels › PH domain-like › PH domain-like › PH domain-like 0.56 47.0 3.57e-01 96.8% 71.2%
3575298 214.1.1.0 a+b two layers › SH2 › SH2 › SH2 0.56 43.0 3.66e-01 85.7% 80.0%
4942524 2003.1.2.15 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain › FAD_binding_3 0.55 40.0 2.52e-01 81.0% 38.1%
4775977 6.1.1.1 beta duplicates or obligate multimers › beta-Trefoil › beta-Trefoil › beta-Trefoil › FGF 0.54 33.0 3.63e-01 85.7% 83.7%
4937970 3111.1.1.0 beta barrels › STT3/PglB/AglB beta-barrel domain › STT3/PglB/AglB beta-barrel domain › STT3/PglB/AglB beta-barrel domain 0.54 39.0 3.36e-01 79.4% 95.5%
3356297 5.1.2.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 5-bladed 0.54 38.0 3.12e-01 76.2% 45.4%
3918073 1170.1.1.1 beta barrels › IL8-related › IL8-related › IL8 › IL8 0.54 42.0 4.13e-01 90.5% 84.3%
3974132 4152.2.1.0 a+b two layers › Shew3726-like › Uncharacterized protein CV_2116 › Uncharacterized protein CV_2116 0.54 37.0 3.52e-01 71.4% 85.3%
3441723 5.1.3.118 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › FBA_3 0.53 39.0 2.59e-01 79.4% 38.5%
3512816 5.1.4.313 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Beta-prop_BBS7 0.52 45.0 2.83e-01 100.0% 57.4%
4032923 2003.1.2.24 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain › Pyr_redox_2 0.52 38.0 2.51e-01 85.7% 79.7%
4951503 2.4.1.0 beta barrels › OB-fold › MOP-like › MOP-like 0.51 39.0 3.04e-01 87.3% 34.4%
3595668 2003.1.2.7 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain › FAD_binding_2 0.51 35.0 2.50e-01 74.6% 36.0%
3899809 6.1.1.4 beta duplicates or obligate multimers › beta-Trefoil › beta-Trefoil › beta-Trefoil › Ricin_B_lectin 0.51 42.0 3.37e-01 100.0% 53.1%
164415 3083.1.1.1 beta barrels › Micronemal adhesive repeat › Micronemal adhesive repeat › Micronemal adhesive repeat › MAR_sialic_bdg 0.50 41.0 3.42e-01 93.7% 81.9%