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ERMGT119_2_scaffold_6_prodigal-single.1__X__X__00145

Bact-Vir

ERMGT119_2_scaffold_6_prodigal-single.1__X__X__00145

Identity

Kingdom:
phage

Quality

71.0 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

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Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 144-199
PDB
Domain cluster: representative
D2 high residues 205-274
PDB
D3 medium residues 65-126
PDB
Domain cluster: representative
CATH (21)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2y44A00 1.20.1260.80 Mainly Alpha › Up-down Bundle › Ferritin › 0.77 54.0 3.77e-01 72.6% 87.5%
2vy1A00 1.10.4180.10 Mainly Alpha › Orthogonal Bundle › Protein LEAFY › Protein LEAFY 0.77 56.0 4.07e-01 77.4% 41.1%
6qumQ00 1.20.20.10 Mainly Alpha › Up-down Bundle › F1FO ATP Synthase › F1F0 ATP synthase subunit C 0.70 51.0 4.83e-01 77.4% 93.2%
2e62A01 6.10.140.420 Special › Helix non-globular › Helix Hairpins › 0.68 49.0 5.28e-01 77.4% 92.3%
3ceiA01 1.10.287.990 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Fe,Mn superoxide dismutase (SOD) domain 0.68 46.0 4.61e-01 71.0% 96.8%
2f8lA01 1.10.150.470 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › 0.67 49.0 4.51e-01 93.5% 59.3%
3e3vA03 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.67 43.0 4.51e-01 72.6% 73.2%
3favD00 1.10.287.1060 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › ESAT-6-like 0.66 49.0 4.51e-01 77.4% 88.5%
4jd9G00 1.10.238.20 Mainly Alpha › Orthogonal Bundle › Recoverin; domain 1 › Pheromone/general odorant binding protein domain 0.66 47.0 3.80e-01 75.8% 45.0%
3hl1A02 6.10.140.1530 Special › Helix non-globular › Helix Hairpins › 0.66 45.0 4.45e-01 71.0% 81.5%
3b0bB00 1.10.20.10 Mainly Alpha › Orthogonal Bundle › Histone, subunit A › Histone, subunit A 0.63 52.0 4.57e-01 95.2% 87.6%
4y0bA00 1.10.1780.10 Mainly Alpha › Orthogonal Bundle › Double Clp-N motif › Clp, N-terminal domain 0.62 54.0 4.18e-01 98.4% 80.7%
7ce1A01 1.10.260.40 Mainly Alpha › Orthogonal Bundle › 434 Repressor (Amino-terminal Domain) › lambda repressor-like DNA-binding domains 0.62 33.0 3.56e-01 72.6% 57.7%
3zheD01 1.25.40.10 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain 0.62 45.0 3.12e-01 77.4% 23.9%
3dtoA01 1.10.472.50 Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › HD-domain/PDEase-like 0.61 49.0 4.36e-01 87.1% 80.7%
4z7eA01 3.40.190.10 Alpha Beta › 3-Layer(aba) Sandwich › D-Maltodextrin-Binding Protein; domain 2 › Periplasmic binding protein-like II 0.61 45.0 3.41e-01 82.3% 64.5%
6c62A00 3.90.1300.10 Alpha Beta › Alpha-Beta Complex › Amidase signature (AS) enzymes › Amidase signature (AS) domain 0.61 45.0 2.70e-01 79.0% 33.3%
1c00A00 3.40.50.1820 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain 0.60 51.0 3.08e-01 100.0% 26.7%
3qqaA02 1.10.357.10 Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2 0.56 45.0 3.65e-01 98.4% 99.3%
2ja2A04 1.10.8.70 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Glutamate-tRNA synthetase, class I, anticodon-binding domain 1 0.53 38.0 4.11e-01 77.4% 96.2%
2cfoA04 1.10.8.70 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Glutamate-tRNA synthetase, class I, anticodon-binding domain 1 0.53 38.0 4.05e-01 77.4% 96.3%
ECOD (12)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
5026919 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.78 54.0 5.07e-01 72.6% 61.3%
3519172 101.1.1.0 ↗ alpha arrays › HTH › HTH › Three-helical HTH 0.66 38.0 4.15e-01 79.0% 70.0%
3590906 2004.1.1.342 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › AAA_10 0.66 45.0 2.73e-01 74.2% 10.1%
4021907 633.23.1.0 ↗ alpha bundles › Bromodomain-like › Claudin › Claudin 0.65 58.0 4.28e-01 98.4% 58.1%
3617518 632.15.1.0 ↗ alpha bundles › immunoglobulin/albumin-binding domain-like › Staphylococcal complement inhibitor (SCIN) › Staphylococcal complement inhibitor (SCIN) 0.62 53.0 5.06e-01 91.9% 97.1%
3914715 605.1.1.235 ↗ alpha duplicates or obligate multimers › ROP-like › Homodimeric domain of signal transducing histidine kinase › Homodimeric domain of signal transducing histidine kinase › BicD 0.62 57.0 5.30e-01 100.0% 92.0%
4941976 632.11.1.0 ↗ alpha bundles › immunoglobulin/albumin-binding domain-like › AF1782-like › AF1782-like 0.61 54.0 4.42e-01 96.8% 94.5%
4954910 632.11.1.0 ↗ alpha bundles › immunoglobulin/albumin-binding domain-like › AF1782-like › AF1782-like 0.57 44.0 3.99e-01 80.6% 65.0%
4413129 2004.1.1.342 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › AAA_10 0.55 46.0 2.81e-01 93.5% 15.9%
4642402 2004.1.1.226 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › ADDB_N 0.53 45.0 2.56e-01 100.0% 10.5%
3423593 109.4.1.1424 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR_1, PPR_2, PPR_3, TPR_24 0.50 38.0 3.00e-01 85.5% 60.0%
3681133 109.4.1.1280 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR, PPR_2, PPR_long 0.50 38.0 2.58e-01 83.9% 21.7%