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ERMGT119_2_scaffold_6_prodigal-single.1__X__X__00167

Bact-Vir

ERMGT119_2_scaffold_6_prodigal-single.1__X__X__00167

Identity

Kingdom:
phage

Quality

82.5 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 5-49
PDB
Domain cluster: representative
CATH (64)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2f4nB02 2.40.30.90 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Bacterial fluorinating enzyme like 0.74 64.0 4.95e-01 95.6% 69.1%
4iauA01 2.60.20.10 Mainly Beta › Sandwich › Gamma-B Crystallin; domain 1 › Crystallins 0.71 50.0 4.27e-01 100.0% 44.9%
4kyzA00 3.30.70.600 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Ribosomal protein S10 0.69 59.0 4.03e-01 100.0% 47.9%
1qr4A01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.68 55.0 4.57e-01 100.0% 49.4%
2yn5A01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.68 56.0 4.73e-01 100.0% 54.4%
6z9cA01 2.60.40.1470 Mainly Beta › Sandwich › Immunoglobulin-like › ApaG domain 0.67 58.0 4.29e-01 100.0% 45.1%
2k57A00 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.67 58.0 5.46e-01 97.8% 96.4%
1o5uA00 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.67 50.0 4.05e-01 100.0% 42.0%
4kncA02 2.60.120.1380 Mainly Beta › Sandwich › Jelly Rolls › C-terminal carbohydrate-binding module 0.67 58.0 4.33e-01 100.0% 45.3%
5hdwA00 2.60.40.1470 Mainly Beta › Sandwich › Immunoglobulin-like › ApaG domain 0.66 57.0 4.14e-01 100.0% 41.2%
3rj2X00 2.60.120.1150 Mainly Beta › Sandwich › Jelly Rolls › 0.66 57.0 4.12e-01 100.0% 33.8%
5owvD01 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.66 54.0 3.48e-01 100.0% 18.9%
2f1eA00 2.60.40.1470 Mainly Beta › Sandwich › Immunoglobulin-like › ApaG domain 0.66 55.0 4.20e-01 100.0% 46.6%
1xvsA00 2.60.40.1470 Mainly Beta › Sandwich › Immunoglobulin-like › ApaG domain 0.66 56.0 4.17e-01 100.0% 43.9%
1yn3A00 3.10.20.120 Alpha Beta › Roll › Ubiquitin-like (UB roll) › 0.66 53.0 4.27e-01 95.6% 93.9%
1jx4A04 3.30.1490.100 Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › DNA polymerase, Y-family, little finger domain 0.65 54.0 4.35e-01 100.0% 57.1%
4nohA01 3.30.70.3060 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.65 56.0 4.88e-01 100.0% 98.6%
5eh1A02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.65 51.0 4.14e-01 100.0% 44.2%
6julA02 3.30.1490.100 Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › DNA polymerase, Y-family, little finger domain 0.65 54.0 4.38e-01 100.0% 57.3%
1qysA00 3.30.1710.10 Alpha Beta › 2-Layer Sandwich › top7, de novo designed protein › top7, de novo designed protein 0.65 54.0 4.40e-01 100.0% 53.3%
3wqbA02 2.60.120.260 Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like 0.64 55.0 3.78e-01 100.0% 74.7%
3b8fB00 3.40.140.10 Alpha Beta › 3-Layer(aba) Sandwich › Cytidine Deaminase; domain 2 › Cytidine Deaminase, domain 2 0.64 55.0 3.91e-01 100.0% 37.3%
4pofA03 2.20.28.10 Mainly Beta › Single Sheet › Rubrerythrin, domain 2 › 0.64 54.0 5.30e-01 100.0% 98.0%
1o54A01 3.10.330.20 Alpha Beta › Roll › Vcp-like ATPase; Chain A, domain 2 › 0.63 53.0 4.62e-01 97.8% 81.9%
4r3dA03 2.60.120.1680 Mainly Beta › Sandwich › Jelly Rolls › 0.63 54.0 3.91e-01 100.0% 40.9%
1u1sA00 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.63 56.0 4.92e-01 100.0% 75.8%
3mfiA04 3.30.1490.100 Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › DNA polymerase, Y-family, little finger domain 0.63 51.0 3.96e-01 100.0% 52.9%
3loiA01 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.63 53.0 3.62e-01 100.0% 26.9%
4uzgA01 2.60.40.740 Mainly Beta › Sandwich › Immunoglobulin-like › 0.63 53.0 3.68e-01 97.8% 71.8%
1yudA01 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.63 52.0 3.62e-01 100.0% 27.7%
1ca1A02 2.60.60.20 Mainly Beta › Sandwich › Lipoxygenase-1 › PLAT/LH2 domain 0.62 54.0 4.00e-01 100.0% 45.8%
4ewfA00 3.40.710.10 Alpha Beta › 3-Layer(aba) Sandwich › Beta-lactamase › DD-peptidase/beta-lactamase superfamily 0.62 44.0 2.81e-01 80.0% 89.9%
3bn6A00 2.60.120.260 Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like 0.62 51.0 3.62e-01 100.0% 56.3%
2jvuA00 2.60.40.2290 Mainly Beta › Sandwich › Immunoglobulin-like › 0.62 51.0 4.12e-01 100.0% 49.0%
1kq1H00 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.62 52.0 4.64e-01 95.6% 72.7%
7c2fB01 3.40.20.10 Alpha Beta › 3-Layer(aba) Sandwich › Severin › Severin 0.61 42.0 3.49e-01 97.8% 38.4%
6m3aA01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.61 52.0 4.64e-01 100.0% 71.2%
1wmhA00 3.10.20.90 Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1 0.61 48.0 4.16e-01 97.8% 92.8%
6b9tF01 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.61 49.0 3.69e-01 100.0% 35.2%
2fb7A00 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.61 50.0 4.28e-01 100.0% 90.0%
4xvhA01 2.60.120.260 Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like 0.60 51.0 3.99e-01 100.0% 43.9%
1et9A01 3.10.20.120 Alpha Beta › Roll › Ubiquitin-like (UB roll) › 0.60 47.0 3.75e-01 95.6% 90.9%
2k2dA00 2.20.28.10 Mainly Beta › Single Sheet › Rubrerythrin, domain 2 › 0.60 44.0 4.43e-01 100.0% 78.7%
2aq6A00 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.60 50.0 3.62e-01 100.0% 37.8%
3jr7A02 2.20.28.50 Mainly Beta › Single Sheet › Rubrerythrin, domain 2 › DegV, N-terminal domain, peripheral subdomain 0.60 45.0 4.70e-01 100.0% 100.0%
1vl7A00 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.60 50.0 3.66e-01 100.0% 39.3%
2pwyA01 3.10.330.20 Alpha Beta › Roll › Vcp-like ATPase; Chain A, domain 2 › 0.59 47.0 4.47e-01 93.3% 100.0%
6ixwB01 3.30.420.40 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain 0.59 51.0 3.52e-01 100.0% 61.1%
2dk6A01 3.30.720.50 Alpha Beta › 2-Layer Sandwich › Signal recognition particle alu RNA binding heterodimer, srp9/1 › 0.59 47.0 3.90e-01 100.0% 81.9%
6hj2A00 1.10.565.10 Mainly Alpha › Orthogonal Bundle › Retinoid X Receptor › Retinoid X Receptor 0.58 49.0 3.03e-01 100.0% 36.5%
1p8jA02 2.60.120.260 Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like 0.57 46.0 3.49e-01 100.0% 42.4%
1u3eM02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.57 49.0 4.35e-01 100.0% 80.9%
2dlgA01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.57 47.0 4.04e-01 100.0% 58.7%
2jx5A00 3.10.20.30 Alpha Beta › Roll › Ubiquitin-like (UB roll) › Beta-grasp domain 0.57 45.0 4.06e-01 97.8% 79.7%
2lw3A00 2.60.40.2880 Mainly Beta › Sandwich › Immunoglobulin-like › MmpS1-5, C-terminal soluble domain 0.57 44.0 3.66e-01 100.0% 46.7%
1ea0A01 3.60.20.10 Alpha Beta › 4-Layer Sandwich › Glutamine Phosphoribosylpyrophosphate, subunit 1, domain 1 › Aminohydrolase, N-terminal nucleophile (Ntn) domain 0.56 46.0 2.72e-01 100.0% 39.9%
4l1dC00 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.56 45.0 3.58e-01 100.0% 59.6%
2z8lA01 3.10.20.120 Alpha Beta › Roll › Ubiquitin-like (UB roll) › 0.55 46.0 3.53e-01 100.0% 76.1%
2iciA01 3.10.20.120 Alpha Beta › Roll › Ubiquitin-like (UB roll) › 0.54 46.0 3.28e-01 100.0% 34.9%
3w42A00 3.60.40.10 Alpha Beta › 4-Layer Sandwich › Phosphatase 2c; domain 1 › PPM-type phosphatase domain 0.54 40.0 2.88e-01 100.0% 79.9%
3wdhA01 2.60.40.2320 Mainly Beta › Sandwich › Immunoglobulin-like › 0.53 44.0 3.56e-01 97.8% 52.1%
2o3iA01 3.40.1610.10 Alpha Beta › 3-Layer(aba) Sandwich › CV3147-like fold › CV3147-like domain 0.52 37.0 2.50e-01 86.7% 23.7%
2yvsA01 3.30.465.10 Alpha Beta › 2-Layer Sandwich › Uridine Diphospho-n-acetylenolpyruvylglucosamine Reductase; domain 3 › 0.51 43.0 3.32e-01 100.0% 42.1%
3bcwA01 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.51 41.0 3.34e-01 100.0% 49.0%
ECOD (49)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4605419 304.120.1.6 a+b two layers › Alpha-beta plaits › Ferredoxin-like domain in ThiI › Ferredoxin-like domain in ThiI › ThiI_fer 0.77 64.0 5.27e-01 93.3% 100.0%
3600531 4012.3.1.0 a+b two layers › SSHS domain › SSHS domain in CRISPR-associated endonuclease Cas9 › SSHS domain in CRISPR-associated endonuclease Cas9 0.76 65.0 6.26e-01 100.0% 98.1%
4958689 821.1.1.14 a+b three layers › GIY-YIG endonuclease › GIY-YIG endonuclease › GIY-YIG endonuclease › DUF2797 0.76 59.0 5.44e-01 100.0% 66.7%
3911204 382.1.1.16 few secondary structure elements › Snake toxin-like › Snake toxin-like › Snake toxin-like › CD59 0.75 63.0 5.39e-01 100.0% 58.7%
3607227 4012.3.1.0 a+b two layers › SSHS domain › SSHS domain in CRISPR-associated endonuclease Cas9 › SSHS domain in CRISPR-associated endonuclease Cas9 0.74 61.0 5.91e-01 93.3% 98.0%
5001166 301.1.1.2 a+b three layers › Bacillus chorismate mutase-like › L30e-like › L30e-like › eRF1_3 0.74 63.0 4.53e-01 100.0% 33.3%
4158495 821.1.1.1 a+b three layers › GIY-YIG endonuclease › GIY-YIG endonuclease › GIY-YIG endonuclease › GIY-YIG 0.71 60.0 4.88e-01 100.0% 55.6%
3480696 382.1.1.0 few secondary structure elements › Snake toxin-like › Snake toxin-like › Snake toxin-like 0.70 60.0 4.95e-01 100.0% 52.9%
3734369 4121.1.1.0 a+b three layers › CorA soluble domain-like › CorA soluble domain-like › CorA soluble domain-like 0.70 59.0 3.61e-01 100.0% 15.1%
4180988 1119.1.1.1 a+b complex topology › 6-carboxyhexanoate-CoA ligase › 6-carboxyhexanoate-CoA ligase › 6-carboxyhexanoate-CoA ligase › BioW 0.69 58.0 3.71e-01 100.0% 20.9%
146929 3115.3.1.1 a+b two layers › GP2-like › P56 › P56 › UDG-inhib_P56 0.69 59.0 5.54e-01 100.0% 83.9%
3945554 221.1.1.0 a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like 0.69 52.0 4.15e-01 100.0% 40.0%
25624 4.1.1.45 beta barrels › SH3 › SH3 › SH3 › DUF903 0.69 59.0 5.62e-01 95.6% 100.0%
3354546 299.1.1.1 a+b complex topology › YbaK/ProRS associated domain › YbaK/ProRS associated domain › YbaK/ProRS associated domain › tRNA_edit 0.68 58.0 4.00e-01 100.0% 53.9%
3941506 2002.1.1.16 a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Bac_luciferase 0.68 55.0 3.27e-01 100.0% 12.2%
3216210 3115.1.1.0 a+b two layers › GP2-like › RplX-like › RplX-like 0.68 57.0 5.56e-01 100.0% 94.0%
4000175 10.32.1.0 beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like 0.68 57.0 4.74e-01 100.0% 52.9%
3975705 3115.6.1.0 a+b two layers › GP2-like › Bacterial RNA polymerase subunit epsilon › Bacterial RNA polymerase subunit epsilon 0.66 52.0 5.08e-01 100.0% 84.0%
4007508 3115.6.1.2 a+b two layers › GP2-like › Bacterial RNA polymerase subunit epsilon › Bacterial RNA polymerase subunit epsilon › PF28597 0.66 51.0 5.03e-01 100.0% 84.0%
3958896 4187.2.1.0 a+b two layers › NosL/MerB-like › DUF2233 › DUF2233 0.64 51.0 4.76e-01 93.3% 75.0%
4826815 10.1.1.14 beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases › CoV_S1 0.64 52.0 3.62e-01 100.0% 56.3%
5007278 11.1.5.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Common fold of diphtheria toxin/transcription factors/cytochrome f 0.63 54.0 3.98e-01 100.0% 38.5%
4004704 3115.6.1.2 a+b two layers › GP2-like › Bacterial RNA polymerase subunit epsilon › Bacterial RNA polymerase subunit epsilon › PF28597 0.63 49.0 4.97e-01 100.0% 95.6%
4971396 375.1.1.0 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.63 53.0 5.04e-01 100.0% 90.9%
3241250 221.1.1.0 a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like 0.63 52.0 4.09e-01 97.8% 82.9%
3968122 3115.6.1.2 a+b two layers › GP2-like › Bacterial RNA polymerase subunit epsilon › Bacterial RNA polymerase subunit epsilon › PF28597 0.63 49.0 4.95e-01 100.0% 95.6%
4083103 302.1.1.1 a+b two layers › Reverse ferredoxin › Lesion bypass DNA polymerase (Y-family), little finger domain › Lesion bypass DNA polymerase (Y-family), little finger domain › IMS_C 0.63 53.0 3.95e-01 100.0% 45.6%
3461676 10.32.1.212 beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › GUB_WAK_bind 0.63 54.0 3.55e-01 100.0% 46.5%
3929781 11.1.1.813 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › INTS4_C 0.62 53.0 3.78e-01 100.0% 40.7%
3596155 223.2.1.0 a+b three layers › Profilin-like › profilin-like › profilin-like 0.61 43.0 3.33e-01 77.8% 84.3%
3959955 304.163.1.3 a+b two layers › Alpha-beta plaits › ATP-binding protein TM_1403 insertion domain › ATP-binding protein TM_1403 insertion domain › PF31118 0.61 49.0 4.98e-01 100.0% 95.6%
3412052 379.1.1.0 few secondary structure elements › Kazal-type serine protease inhibitors-like › Kazal-type serine protease inhibitors › Kazal-type serine protease inhibitors 0.61 50.0 4.65e-01 97.8% 71.7%
4426192 2004.1.1.36 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Dynamin_N 0.61 52.0 3.19e-01 100.0% 21.3%
3389539 379.1.1.0 few secondary structure elements › Kazal-type serine protease inhibitors-like › Kazal-type serine protease inhibitors › Kazal-type serine protease inhibitors 0.60 46.0 4.61e-01 100.0% 88.9%
None 0.60 51.0 3.31e-01 100.0% 28.3%
3389034 379.1.1.0 few secondary structure elements › Kazal-type serine protease inhibitors-like › Kazal-type serine protease inhibitors › Kazal-type serine protease inhibitors 0.60 47.0 4.50e-01 100.0% 76.4%
5037556 2003.1.5.81 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › Methyltransf_25 0.59 48.0 3.09e-01 95.6% 71.8%
3404255 379.1.1.1 few secondary structure elements › Kazal-type serine protease inhibitors-like › Kazal-type serine protease inhibitors › Kazal-type serine protease inhibitors › Kazal_1 0.59 49.0 4.76e-01 97.8% 86.0%
4020630 221.1.1.4 a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like › PB1 0.57 47.0 3.85e-01 100.0% 91.6%
3325006 375.1.1.58 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › MCM_OB 0.57 47.0 4.53e-01 100.0% 83.6%
3678933 7590.1.1.3 a/b three-layered sandwiches › Middle domain in Argonaute homologs › Middle domain in Argonaute homologs › Middle domain in Argonaute homologs › Piwi,ArgoMid 0.56 44.0 3.05e-01 95.6% 98.9%
4181066 240.2.1.0 a+b complex topology › Ribosomal protein TL5/L25 C-terminal domain-like › Insert subdomain of RNA polymerase alpha subunit › Insert subdomain of RNA polymerase alpha subunit 0.55 45.0 3.53e-01 100.0% 90.0%
4135543 221.1.1.17 a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like › Stap_Strp_tox_C 0.54 47.0 3.53e-01 100.0% 45.4%
163858 221.1.1.17 a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like › Stap_Strp_tox_C 0.54 46.0 3.37e-01 100.0% 39.1%
4438042 11.1.1.365 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › ZP1_ZP4_Ig-like 0.54 39.0 2.90e-01 80.0% 35.4%
3733429 11.1.1.908 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Ig_CYK3_C 0.54 43.0 3.33e-01 100.0% 48.4%
3838472 2004.1.1.36 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Dynamin_N 0.53 44.0 2.83e-01 100.0% 26.2%
3515029 223.2.1.46 a+b three layers › Profilin-like › profilin-like › profilin-like › FNIP_N, FNIP_M 0.53 36.0 2.72e-01 77.8% 34.0%
3953335 217.1.1.2 a+b complex topology › FAD-binding domain-like › FAD-binding domain › FAD-binding domain › FAD_binding_4 0.53 43.0 3.34e-01 100.0% 40.0%