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ERMGT119_2_scaffold_6_prodigal-single.1__X__X__00186
Bact-VirERMGT119_2_scaffold_6_prodigal-single.1__X__X__00186
Identity
- Kingdom:
- phage
Quality
77.0
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 3-64
Domain cluster:
representative
CATH (35)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 7lscA01 | 3.30.450.40 | Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › GAF domain | 0.74 | 44.0 | 3.23e-01 | 100.0% | 24.8% |
| 3d3oA00 | 3.30.450.40 | Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › GAF domain | 0.66 | 47.0 | 3.45e-01 | 75.8% | 79.5% |
| 5y6iA02 | 3.30.450.40 | Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › GAF domain | 0.66 | 47.0 | 3.49e-01 | 75.8% | 82.0% |
| 3obfA00 | 3.30.450.40 | Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › GAF domain | 0.64 | 46.0 | 3.32e-01 | 75.8% | 79.0% |
| 2xrnA02 | 3.30.450.40 | Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › GAF domain | 0.64 | 46.0 | 3.31e-01 | 75.8% | 76.3% |
| 3bjnA00 | 3.30.450.40 | Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › GAF domain | 0.63 | 45.0 | 3.33e-01 | 75.8% | 81.5% |
| 1b33N01 | 3.30.1490.170 | Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › Allophycocyanin linker chain (domain) | 0.63 | 44.0 | 4.60e-01 | 72.6% | 100.0% |
| 1mkmA03 | 3.30.450.40 | Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › GAF domain | 0.62 | 44.0 | 3.25e-01 | 75.8% | 81.4% |
| 5tjjB02 | 3.30.450.40 | Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › GAF domain | 0.62 | 45.0 | 3.23e-01 | 75.8% | 78.7% |
| 2g7uC02 | 3.30.450.40 | Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › GAF domain | 0.61 | 43.0 | 3.18e-01 | 75.8% | 78.7% |
| 1tf1B00 | 3.30.450.40 | Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › GAF domain | 0.60 | 43.0 | 3.13e-01 | 75.8% | 78.7% |
| 5hpfA00 | 3.30.450.40 | Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › GAF domain | 0.60 | 43.0 | 3.13e-01 | 75.8% | 82.3% |
| 5w1eA01 | 3.30.450.40 | Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › GAF domain | 0.60 | 45.0 | 3.23e-01 | 82.3% | 83.4% |
| 2w1rA00 | 3.30.450.40 | Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › GAF domain | 0.60 | 43.0 | 3.49e-01 | 75.8% | 86.3% |
| 2o0yB02 | 3.30.450.40 | Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › GAF domain | 0.59 | 42.0 | 3.09e-01 | 75.8% | 75.1% |
| 3ossD00 | 3.30.1370.120 | Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S8; Chain: A, domain 1 › | 0.59 | 46.0 | 3.55e-01 | 88.7% | 68.2% |
| 2l72A00 | 3.40.20.10 | Alpha Beta › 3-Layer(aba) Sandwich › Severin › Severin | 0.59 | 47.0 | 3.94e-01 | 100.0% | 49.2% |
| 1y7xA02 | 2.30.30.550 | Mainly Beta › Roll › SH3 type barrels. › Major Vault Protein repeat | 0.58 | 41.0 | 4.34e-01 | 75.8% | 83.9% |
| 1g8mA03 | 3.40.140.20 | Alpha Beta › 3-Layer(aba) Sandwich › Cytidine Deaminase; domain 2 › AICAR transformylase, duplication domain | 0.58 | 50.0 | 3.85e-01 | 100.0% | 55.1% |
| 3c18A01 | 3.30.460.10 | Alpha Beta › 2-Layer Sandwich › Beta Polymerase; domain 2 › Beta Polymerase, domain 2 | 0.58 | 49.0 | 4.08e-01 | 100.0% | 84.3% |
| 4bf8A00 | 3.10.50.40 | Alpha Beta › Roll › Chitinase A; domain 3 › | 0.57 | 40.0 | 3.26e-01 | 74.2% | 74.4% |
| 1xqbA01 | 2.40.30.70 | Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › YaeB-like | 0.57 | 40.0 | 3.37e-01 | 75.8% | 55.0% |
| 2pw9C03 | 3.40.140.10 | Alpha Beta › 3-Layer(aba) Sandwich › Cytidine Deaminase; domain 2 › Cytidine Deaminase, domain 2 | 0.56 | 47.0 | 3.76e-01 | 100.0% | 45.7% |
| 3bh1A03 | 3.40.140.40 | Alpha Beta › 3-Layer(aba) Sandwich › Cytidine Deaminase; domain 2 › Domain of unknown function (DUF1846), C-terminal subdomain | 0.55 | 47.0 | 3.67e-01 | 100.0% | 82.2% |
| 2avxA00 | 3.30.450.80 | Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › Transcription factor LuxR-like, autoinducer-binding domain | 0.55 | 38.0 | 2.91e-01 | 75.8% | 67.3% |
| 1ou8A00 | 2.30.30.220 | Mainly Beta › Roll › SH3 type barrels. › SspB-like | 0.54 | 38.0 | 3.27e-01 | 75.8% | 68.9% |
| 2fp4B02 | 3.30.1490.20 | Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › ATP-grasp fold, A domain | 0.53 | 39.0 | 3.51e-01 | 80.6% | 93.4% |
| 3li9A02 | 3.30.450.20 | Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain | 0.52 | 39.0 | 3.18e-01 | 85.5% | 54.3% |
| 1no5B00 | 3.30.460.10 | Alpha Beta › 2-Layer Sandwich › Beta Polymerase; domain 2 › Beta Polymerase, domain 2 | 0.52 | 43.0 | 3.81e-01 | 100.0% | 92.2% |
| 2a2jA00 | 2.30.110.10 | Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A | 0.52 | 36.0 | 2.63e-01 | 74.2% | 51.2% |
| 2xfaA00 | 3.40.20.10 | Alpha Beta › 3-Layer(aba) Sandwich › Severin › Severin | 0.51 | 44.0 | 3.43e-01 | 100.0% | 44.1% |
| 6kbyA00 | 3.40.710.10 | Alpha Beta › 3-Layer(aba) Sandwich › Beta-lactamase › DD-peptidase/beta-lactamase superfamily | 0.51 | 38.0 | 2.48e-01 | 87.1% | 80.4% |
| 3ffyA00 | 3.30.950.10 | Alpha Beta › 2-Layer Sandwich › Methyltransferase, Cobalt-precorrin-4 Transmethylase; Domain 2 › Tetrapyrrole methylase, C-terminal domain | 0.51 | 43.0 | 3.64e-01 | 100.0% | 92.0% |
| 1ysqA00 | 3.30.450.40 | Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › GAF domain | 0.51 | 44.0 | 3.19e-01 | 100.0% | 97.8% |
| 6fnnB01 | 3.40.140.10 | Alpha Beta › 3-Layer(aba) Sandwich › Cytidine Deaminase; domain 2 › Cytidine Deaminase, domain 2 | 0.50 | 42.0 | 3.36e-01 | 100.0% | 76.4% |
ECOD (26)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3284893 | 223.1.1.4 ↗ | a+b three layers › Profilin-like › sensor domains › sensor domains › IclR | 0.65 | 46.0 | 3.32e-01 | 75.8% | 77.8% |
| 3952932 | 223.1.1.4 ↗ | a+b three layers › Profilin-like › sensor domains › sensor domains › IclR | 0.65 | 46.0 | 3.35e-01 | 75.8% | 79.3% |
| 4204256 | 223.1.1.4 ↗ | a+b three layers › Profilin-like › sensor domains › sensor domains › IclR | 0.64 | 46.0 | 3.32e-01 | 75.8% | 80.0% |
| 3285223 | 223.1.1.0 ↗ | a+b three layers › Profilin-like › sensor domains › sensor domains | 0.64 | 47.0 | 3.34e-01 | 77.4% | 73.9% |
| 3971877 | 223.1.1.4 ↗ | a+b three layers › Profilin-like › sensor domains › sensor domains › IclR | 0.64 | 45.0 | 3.28e-01 | 75.8% | 80.0% |
| 3611647 | 3351.1.1.1 ↗ | a/b three-layered sandwiches › Atg7 N-terminal domain-like › N-terminal domain in E1 enzyme Atg7 › N-terminal domain in E1 enzyme Atg7 › ATG7_N | 0.63 | 54.0 | 3.93e-01 | 100.0% | 36.2% |
| 3290876 | 223.1.1.4 ↗ | a+b three layers › Profilin-like › sensor domains › sensor domains › IclR | 0.62 | 45.0 | 3.30e-01 | 77.4% | 82.4% |
| 4642338 | 807.1.1.1 ↗ | a+b two layers › Allophycocyanin linker chain (domain) › Allophycocyanin linker chain (domain) › Allophycocyanin linker chain (domain) › CpcD | 0.60 | 44.0 | 4.71e-01 | 77.4% | 96.2% |
| 3283325 | 223.1.1.4 ↗ | a+b three layers › Profilin-like › sensor domains › sensor domains › IclR | 0.60 | 43.0 | 3.22e-01 | 75.8% | 82.9% |
| 2794885 | 807.1.1.1 ↗ | a+b two layers › Allophycocyanin linker chain (domain) › Allophycocyanin linker chain (domain) › Allophycocyanin linker chain (domain) › CpcD | 0.60 | 47.0 | 4.73e-01 | 88.7% | 100.0% |
| 4227341 | 317.1.1.1 ↗ | a+b two layers › Translation initiation factor eIF4e and phosphothreonine lyase › Translation initiation factor eIF4e and phosphothreonine lyase › Translation initiation factor eIF4e and phosphothreonine lyase › IF4E | 0.59 | 50.0 | 3.53e-01 | 98.4% | 68.3% |
| 3979683 | 886.1.1.2 ↗ | a+b duplicates or obligate multimers › Probable bacterial effector-binding domain › Probable bacterial effector-binding domain › Probable bacterial effector-binding domain › GyrI-like | 0.58 | 49.0 | 3.73e-01 | 100.0% | 65.0% |
| 4950203 | 331.4.1.35 ↗ | a+b two layers › TBP-like › Kinase associated domain 1, KA1 › Kinase associated domain 1, KA1 › PF27341 | 0.57 | 49.0 | 3.39e-01 | 100.0% | 85.5% |
| 3616430 | 864.1.1.0 ↗ | a+b two layers › DLC › DLC › DLC | 0.57 | 40.0 | 3.27e-01 | 75.8% | 58.3% |
| 4021088 | 302.1.1.0 ↗ | a+b two layers › Reverse ferredoxin › Lesion bypass DNA polymerase (Y-family), little finger domain › Lesion bypass DNA polymerase (Y-family), little finger domain | 0.57 | 41.0 | 3.14e-01 | 75.8% | 75.5% |
| 4201298 | 1.1.2.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › double psi | 0.55 | 40.0 | 3.31e-01 | 79.0% | 79.1% |
| 3395651 | 223.2.1.32 ↗ | a+b three layers › Profilin-like › profilin-like › profilin-like › Fuz_longin_2 | 0.54 | 38.0 | 2.96e-01 | 77.4% | 66.9% |
| 3776363 | 873.1.1.5 ↗ | a+b complex topology › H-NOX domain › H-NOX domain › H-NOX domain › HNOB | 0.54 | 38.0 | 2.71e-01 | 77.4% | 23.7% |
| 3708550 | 1056.1.1.0 ↗ | a+b two layers › tRNA pseudouridine synthase TruD insertion domain › tRNA pseudouridine synthase TruD insertion domain › tRNA pseudouridine synthase TruD insertion domain | 0.54 | 37.0 | 2.52e-01 | 72.6% | 24.0% |
| 605 | 4.1.2.1 ↗ | beta barrels › SH3 › SH3 › Stringent starvation protein B, SspB › SspB | 0.54 | 38.0 | 3.27e-01 | 75.8% | 68.9% |
| 3224264 | 382.1.1.0 ↗ | few secondary structure elements › Snake toxin-like › Snake toxin-like › Snake toxin-like | 0.53 | 45.0 | 4.05e-01 | 100.0% | 94.4% |
| 3650200 | 11.1.4.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Prealbumin-like | 0.53 | 39.0 | 3.09e-01 | 82.3% | 85.0% |
| 4586436 | 223.1.1.7 ↗ | a+b three layers › Profilin-like › sensor domains › sensor domains › Autoind_bind | 0.53 | 37.0 | 2.77e-01 | 77.4% | 71.1% |
| 3493297 | 316.1.1.19 ↗ | a+b three layers › Nucleotidyltransferase-like › Nucleotidyltransferase › Nucleotidyltransferase › Tam41_Mmp37 | 0.52 | 44.0 | 3.30e-01 | 100.0% | 84.0% |
| 3732370 | 3115.1.1.0 ↗ | a+b two layers › GP2-like › RplX-like › RplX-like | 0.51 | 36.0 | 3.66e-01 | 74.2% | 95.0% |
| 3478158 | 10.32.1.0 ↗ | beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like | 0.50 | 39.0 | 3.11e-01 | 83.9% | 97.6% |