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ERMGT119_2_scaffold_6_prodigal-single.1__X__X__00231
Bact-VirERMGT119_2_scaffold_6_prodigal-single.1__X__X__00231
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 5-80
Domain cluster:
representative
CATH (12)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2rqlA00 | 3.30.160.100 | Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Ribosome hibernation promotion factor-like | 0.65 | 55.0 | 5.15e-01 | 94.7% | 93.7% |
| 4wi1A02 | 3.40.50.800 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Anticodon-binding domain | 0.61 | 52.0 | 4.49e-01 | 96.1% | 86.2% |
| 1adjB02 | 3.40.50.800 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Anticodon-binding domain | 0.59 | 48.0 | 4.50e-01 | 89.5% | 92.6% |
| 2i4lB02 | 3.40.50.800 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Anticodon-binding domain | 0.59 | 46.0 | 4.24e-01 | 86.8% | 88.1% |
| 1g5hB02 | 3.40.50.800 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Anticodon-binding domain | 0.58 | 46.0 | 4.20e-01 | 90.8% | 87.9% |
| 2o8bB04 | 1.10.1420.10 | Mainly Alpha › Orthogonal Bundle › MutS, DNA mismatch repair protein; Chain A, domain 3 › | 0.55 | 39.0 | 3.29e-01 | 75.0% | 50.4% |
| 8c0zE01 | 3.50.50.60 | Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain | 0.54 | 39.0 | 3.32e-01 | 77.6% | 93.1% |
| 3psqB00 | 2.40.260.10 | Mainly Beta › Beta Barrel › Sortase; Chain: A; › Sortase | 0.54 | 39.0 | 3.01e-01 | 92.1% | 33.0% |
| 2dwcB02 | 3.30.1490.20 | Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › ATP-grasp fold, A domain | 0.53 | 32.0 | 3.57e-01 | 88.2% | 78.0% |
| 2dvjA01 | 3.30.505.10 | Alpha Beta › 2-Layer Sandwich › SHC Adaptor Protein › SH2 domain | 0.51 | 41.0 | 3.40e-01 | 90.8% | 93.8% |
| 3tqtA03 | 3.30.1490.20 | Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › ATP-grasp fold, A domain | 0.51 | 36.0 | 3.83e-01 | 92.1% | 85.3% |
| 2bbuA00 | 3.30.505.10 | Alpha Beta › 2-Layer Sandwich › SHC Adaptor Protein › SH2 domain | 0.50 | 40.0 | 3.30e-01 | 92.1% | 85.3% |
ECOD (27)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4947370 | 216.1.1.0 ↗ | a+b two layers › UBC-like › UBC-like › UBC-like | 0.61 | 49.0 | 4.42e-01 | 90.8% | 93.6% |
| 4978318 | 216.1.1.1 ↗ | a+b two layers › UBC-like › UBC-like › UBC-like › UQ_con | 0.61 | 49.0 | 4.38e-01 | 94.7% | 91.7% |
| 4996061 | 7502.1.1.1 ↗ | a/b three-layered sandwiches › Anticodon-binding domain of Class II aaRS › Anticodon-binding domain of Class II aaRS › Anticodon-binding domain of Class II aaRS › HGTP_anticodon | 0.59 | 48.0 | 4.51e-01 | 90.8% | 93.6% |
| 3875074 | 7502.1.1.7 ↗ | a/b three-layered sandwiches › Anticodon-binding domain of Class II aaRS › Anticodon-binding domain of Class II aaRS › Anticodon-binding domain of Class II aaRS › HGTP_anticodon2 | 0.59 | 48.0 | 4.33e-01 | 92.1% | 85.5% |
| 4943184 | 216.1.1.0 ↗ | a+b two layers › UBC-like › UBC-like › UBC-like | 0.59 | 48.0 | 4.38e-01 | 94.7% | 99.1% |
| 3758538 | 216.1.1.27 ↗ | a+b two layers › UBC-like › UBC-like › UBC-like › HGTP_anticodon2 | 0.59 | 48.0 | 4.24e-01 | 92.1% | 81.7% |
| 3648544 | 7502.1.1.1 ↗ | a/b three-layered sandwiches › Anticodon-binding domain of Class II aaRS › Anticodon-binding domain of Class II aaRS › Anticodon-binding domain of Class II aaRS › HGTP_anticodon | 0.58 | 48.0 | 4.34e-01 | 94.7% | 83.6% |
| 5039886 | 7502.1.1.1 ↗ | a/b three-layered sandwiches › Anticodon-binding domain of Class II aaRS › Anticodon-binding domain of Class II aaRS › Anticodon-binding domain of Class II aaRS › HGTP_anticodon | 0.58 | 45.0 | 4.32e-01 | 86.8% | 93.3% |
| 4115708 | 7502.1.1.1 ↗ | a/b three-layered sandwiches › Anticodon-binding domain of Class II aaRS › Anticodon-binding domain of Class II aaRS › Anticodon-binding domain of Class II aaRS › HGTP_anticodon | 0.57 | 47.0 | 4.11e-01 | 96.1% | 93.6% |
| 4000303 | 389.1.2.0 ↗ | few secondary structure elements › EGF-like › EGF-related › Complement control module/SCR domain | 0.57 | 46.0 | 4.56e-01 | 90.8% | 100.0% |
| 5032068 | 7502.1.1.1 ↗ | a/b three-layered sandwiches › Anticodon-binding domain of Class II aaRS › Anticodon-binding domain of Class II aaRS › Anticodon-binding domain of Class II aaRS › HGTP_anticodon | 0.56 | 45.0 | 4.23e-01 | 89.5% | 88.4% |
| 4258681 | 7502.1.1.1 ↗ | a/b three-layered sandwiches › Anticodon-binding domain of Class II aaRS › Anticodon-binding domain of Class II aaRS › Anticodon-binding domain of Class II aaRS › HGTP_anticodon | 0.55 | 44.0 | 4.15e-01 | 90.8% | 92.6% |
| 3924724 | 331.23.1.0 ↗ | a+b two layers › TBP-like › Integrator IntS9/IntS11 C-terminal domain › Integrator IntS9/IntS11 C-terminal domain | 0.55 | 41.0 | 4.07e-01 | 82.9% | 76.2% |
| 3472952 | 214.1.1.1 ↗ | a+b two layers › SH2 › SH2 › SH2 › SH2 | 0.54 | 42.0 | 3.41e-01 | 84.2% | 89.0% |
| 1164319 | 214.1.1.1 ↗ | a+b two layers › SH2 › SH2 › SH2 › SH2 | 0.53 | 40.0 | 3.52e-01 | 82.9% | 86.0% |
| 4026561 | 5.1.4.5 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40,CAF1C_H4-bd | 0.53 | 46.0 | 2.82e-01 | 100.0% | 36.7% |
| 4603979 | 5.1.5.1 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed › WD40 | 0.52 | 44.0 | 2.79e-01 | 100.0% | 24.3% |
| 4602345 | 5.1.5.1 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed › WD40 | 0.52 | 44.0 | 2.72e-01 | 100.0% | 30.8% |
| 4354616 | 5.1.4.1 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40 | 0.52 | 44.0 | 2.74e-01 | 100.0% | 24.4% |
| 4373657 | 5104.1.1.1 ↗ | a+b three layers › C-terminal domain in DHH phosphoesterases › C-terminal domain in DHH phosphoesterases › C-terminal domain in DHH phosphoesterases › DHHA1 | 0.52 | 41.0 | 3.65e-01 | 89.5% | 98.3% |
| 3211478 | 214.1.1.0 ↗ | a+b two layers › SH2 › SH2 › SH2 | 0.51 | 40.0 | 3.57e-01 | 88.2% | 71.7% |
| 4971291 | 300.1.1.0 ↗ | a+b three layers › Phospholipase D/nuclease › Phospholipase D/nuclease › Phospholipase D/nuclease | 0.51 | 40.0 | 3.42e-01 | 88.2% | 90.4% |
| 4319175 | 211.1.1.1 ↗ | a+b two layers › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase | 0.51 | 35.0 | 3.69e-01 | 72.4% | 83.1% |
| 3213954 | 4964.1.1.2 ↗ | alpha arrays › helical bundle in Bacillus stearothermophilus-like DNA polymerase I › helical bundle in Bacillus stearothermophilus-like DNA polymerase I › helical bundle in Bacillus stearothermophilus-like DNA polymerase I › RNA_pol | 0.51 | 34.0 | 2.69e-01 | 71.1% | 58.4% |
| 3785645 | 5.1.4.317 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40, CAF1C_H4-bd, Beta-prop_NOL10_N | 0.51 | 44.0 | 2.83e-01 | 100.0% | 21.0% |
| 4001865 | 5.1.4.1 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40 | 0.50 | 44.0 | 2.88e-01 | 100.0% | 27.9% |
| 3625467 | 316.1.1.0 ↗ | a+b three layers › Nucleotidyltransferase-like › Nucleotidyltransferase › Nucleotidyltransferase | 0.50 | 40.0 | 3.28e-01 | 90.8% | 67.1% |