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ERMGT119_2_scaffold_6_prodigal-single.1__X__X__00236
Bact-VirERMGT119_2_scaffold_6_prodigal-single.1__X__X__00236
Identity
- Kingdom:
- phage
Quality
72.8
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 5-63
Domain cluster:
representative
CATH (22)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2g3aA02 | 3.40.630.30 | Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) | 0.69 | 51.0 | 4.22e-01 | 79.7% | 58.1% |
| 3l9rA01 | 3.30.500.10 | Alpha Beta › 2-Layer Sandwich › Murine Class I Major Histocompatibility Complex, H2-DB; Chain A, domain 1 › MHC class I-like antigen recognition-like | 0.69 | 58.0 | 4.28e-01 | 100.0% | 38.9% |
| 1iq8A03 | 3.10.450.90 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › ArcTGT, C2 domain | 0.69 | 50.0 | 4.61e-01 | 76.3% | 60.8% |
| 3jvgA01 | 3.30.500.10 | Alpha Beta › 2-Layer Sandwich › Murine Class I Major Histocompatibility Complex, H2-DB; Chain A, domain 1 › MHC class I-like antigen recognition-like | 0.67 | 58.0 | 4.22e-01 | 100.0% | 39.9% |
| 4g59C02 | 3.30.500.30 | Alpha Beta › 2-Layer Sandwich › Murine Class I Major Histocompatibility Complex, H2-DB; Chain A, domain 1 › | 0.66 | 56.0 | 4.22e-01 | 100.0% | 38.6% |
| 1zt4C01 | 3.30.500.10 | Alpha Beta › 2-Layer Sandwich › Murine Class I Major Histocompatibility Complex, H2-DB; Chain A, domain 1 › MHC class I-like antigen recognition-like | 0.66 | 56.0 | 4.06e-01 | 100.0% | 38.5% |
| 1pqzA01 | 3.30.500.10 | Alpha Beta › 2-Layer Sandwich › Murine Class I Major Histocompatibility Complex, H2-DB; Chain A, domain 1 › MHC class I-like antigen recognition-like | 0.65 | 56.0 | 4.33e-01 | 100.0% | 46.0% |
| 1y9wA01 | 3.40.630.30 | Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) | 0.62 | 47.0 | 4.08e-01 | 88.1% | 56.7% |
| 2qvpC00 | 3.40.630.10 | Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Zn peptidases | 0.57 | 44.0 | 2.97e-01 | 89.8% | 32.3% |
| 1agxA01 | 3.40.50.1170 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › L-asparaginase, N-terminal domain | 0.57 | 40.0 | 2.75e-01 | 72.9% | 47.7% |
| 6a97C01 | 3.30.500.10 | Alpha Beta › 2-Layer Sandwich › Murine Class I Major Histocompatibility Complex, H2-DB; Chain A, domain 1 › MHC class I-like antigen recognition-like | 0.57 | 48.0 | 3.80e-01 | 98.3% | 87.0% |
| 2q0lA01 | 3.50.50.60 | Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain | 0.57 | 42.0 | 2.96e-01 | 79.7% | 25.1% |
| 1xe4A01 | 3.40.630.30 | Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) | 0.56 | 45.0 | 3.38e-01 | 93.2% | 61.6% |
| 6f9pC01 | 3.60.130.10 | Alpha Beta › 4-Layer Sandwich › Double-stranded beta-helix › Clavaminate synthase-like | 0.56 | 40.0 | 2.45e-01 | 100.0% | 13.5% |
| 5afuV00 | 2.160.10.10 | Mainly Beta › 3 Solenoid › UDP N-Acetylglucosamine Acyltransferase; domain 1 › Hexapeptide repeat proteins | 0.55 | 46.0 | 3.33e-01 | 93.2% | 84.2% |
| 1g5bB00 | 3.60.21.10 | Alpha Beta › 4-Layer Sandwich › Purple Acid Phosphatase; chain A, domain 2 › Metallo-dependent phosphatases | 0.53 | 43.0 | 2.99e-01 | 93.2% | 49.3% |
| 4c5wA02 | 3.60.130.10 | Alpha Beta › 4-Layer Sandwich › Double-stranded beta-helix › Clavaminate synthase-like | 0.53 | 41.0 | 2.73e-01 | 89.8% | 62.7% |
| 2coaA01 | 2.30.29.30 | Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) | 0.53 | 45.0 | 3.69e-01 | 100.0% | 91.5% |
| 4yzgA00 | 3.60.40.10 | Alpha Beta › 4-Layer Sandwich › Phosphatase 2c; domain 1 › PPM-type phosphatase domain | 0.52 | 41.0 | 2.75e-01 | 94.9% | 56.8% |
| 3u50C02 | 2.20.25.10 | Mainly Beta › Single Sheet › N-terminal domain of TfIIb › | 0.51 | 27.0 | 3.14e-01 | 96.6% | 68.6% |
| 2rprA00 | 2.20.25.240 | Mainly Beta › Single Sheet › N-terminal domain of TfIIb › | 0.51 | 38.0 | 3.45e-01 | 84.7% | 60.9% |
| 4fgoA00 | 3.10.620.30 | Alpha Beta › Roll › C8orf32 fold › | 0.51 | 44.0 | 3.13e-01 | 100.0% | 56.4% |
ECOD (18)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 5003260 | 243.6.1.9 ↗ | a+b two layers › Cystatin-like › Pre-PUA domain › Pre-PUA domain › TGT_C2 | 0.75 | 50.0 | 4.30e-01 | 76.3% | 45.6% |
| 4879078 | 233.1.1.6 ↗ | a+b two layers › MHC antigen-recognition domain › MHC antigen-recognition domain › MHC antigen-recognition domain › MHC_I_3 | 0.67 | 57.0 | 4.13e-01 | 100.0% | 38.0% |
| 5057043 | 4.6.1.0 ↗ | beta barrels › SH3 › PRC-barrel domain › PRC-barrel domain | 0.67 | 38.0 | 3.68e-01 | 83.1% | 50.8% |
| 142797 | 233.1.1.6 ↗ | a+b two layers › MHC antigen-recognition domain › MHC antigen-recognition domain › MHC antigen-recognition domain › MHC_I_3 | 0.65 | 56.0 | 4.05e-01 | 100.0% | 38.8% |
| 6599 | 233.1.1.0 ↗ | a+b two layers › MHC antigen-recognition domain › MHC antigen-recognition domain › MHC antigen-recognition domain | 0.65 | 56.0 | 4.49e-01 | 100.0% | 50.8% |
| 4989202 | 304.45.1.2 ↗ | a+b two layers › Alpha-beta plaits › 6-hydroxymethyl-7,8-dihydropterin pyrophosphokinase, HPPK › 6-hydroxymethyl-7,8-dihydropterin pyrophosphokinase, HPPK › DUF4416 | 0.63 | 55.0 | 4.04e-01 | 98.3% | 40.6% |
| 5032434 | 4275.1.1.0 ↗ | alpha arrays › Hypothetical protein YqbG-like › Hypothetical protein YqbG-like › Hypothetical protein YqbG-like | 0.63 | 54.0 | 4.51e-01 | 100.0% | 93.6% |
| 11077 | 213.1.1.1 ↗ | a+b three layers › Nat/Ivy › Acyl-CoA N-acyltransferases (Nat) › Acyl-CoA N-acyltransferases (Nat) › Acetyltransf_1 | 0.62 | 47.0 | 3.75e-01 | 88.1% | 43.8% |
| 3691916 | 315.1.1.6 ↗ | a+b two layers › Tautomerase/MIF-like › Tautomerase/MIF › Tautomerase/MIF › Tautomerase_3 | 0.61 | 49.0 | 4.15e-01 | 91.5% | 85.7% |
| 4338928 | 233.1.1.6 ↗ | a+b two layers › MHC antigen-recognition domain › MHC antigen-recognition domain › MHC antigen-recognition domain › MHC_I_3 | 0.61 | 54.0 | 4.70e-01 | 100.0% | 68.9% |
| 3988073 | 213.1.1.1 ↗ | a+b three layers › Nat/Ivy › Acyl-CoA N-acyltransferases (Nat) › Acyl-CoA N-acyltransferases (Nat) › Acetyltransf_1 | 0.61 | 47.0 | 3.62e-01 | 89.8% | 39.4% |
| 4609532 | 2002.1.1.83 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Amidohydro_1 | 0.58 | 46.0 | 2.87e-01 | 93.2% | 67.8% |
| 3219682 | 220.1.1.0 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like | 0.53 | 46.0 | 3.59e-01 | 100.0% | 90.4% |
| 3924809 | 10.12.1.0 ↗ | beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix | 0.51 | 40.0 | 2.89e-01 | 89.8% | 69.3% |
| 3944198 | 2002.1.1.83 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Amidohydro_1 | 0.51 | 42.0 | 2.58e-01 | 96.6% | 86.9% |
| 4011411 | 10.12.1.0 ↗ | beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix | 0.51 | 41.0 | 2.58e-01 | 91.5% | 54.5% |
| 3997445 | 261.1.1.1 ↗ | a+b complex topology › Hect, E3 ligase catalytic domain › Hect, E3 ligase catalytic domain › Hect, E3 ligase catalytic domain › HECT | 0.51 | 40.0 | 2.41e-01 | 89.8% | 71.7% |
| 3455239 | 292.2.1.12 ↗ | a+b two layers › RIP/Polo-box domain › Polo-box domain › Polo-box domain › Calmod_bind_C | 0.50 | 39.0 | 3.96e-01 | 91.5% | 98.3% |