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ERMGT119_2_scaffold_6_prodigal-single.1__X__X__00241

Bact-Vir

ERMGT119_2_scaffold_6_prodigal-single.1__X__X__00241

Identity

Kingdom:
phage

Quality

85.1 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 7-73
PDB
Domain cluster: representative
CATH (51)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
6my0A02 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.77 56.0 5.71e-01 80.6% 78.5%
2e70A00 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.74 52.0 5.14e-01 80.6% 69.0%
4b9wA02 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.73 55.0 6.01e-01 85.1% 96.4%
2fhdA02 2.30.30.810 Mainly Beta › Roll › SH3 type barrels. › 0.72 55.0 5.38e-01 80.6% 84.7%
7cfdA01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.71 52.0 5.10e-01 85.1% 71.2%
2diqA01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.71 58.0 5.02e-01 95.5% 59.0%
2l89A00 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.70 60.0 5.10e-01 94.0% 76.9%
6ghmC02 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.70 51.0 5.22e-01 76.1% 90.6%
1ov3A02 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.70 51.0 5.56e-01 76.1% 100.0%
3h8zA02 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.70 51.0 5.20e-01 85.1% 79.7%
2e6nA00 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.70 58.0 5.00e-01 98.5% 58.7%
5o99A00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.69 51.0 5.40e-01 77.6% 93.3%
4epcA02 2.30.30.170 Mainly Beta › Roll › SH3 type barrels. › 0.69 50.0 4.89e-01 74.6% 93.0%
2dmoA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.69 52.0 5.21e-01 79.1% 83.8%
2ckkA01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.68 50.0 5.60e-01 77.6% 98.1%
2db9A01 3.90.70.200 Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › Plus-3 domain 0.68 61.0 4.84e-01 100.0% 59.4%
4ld6A00 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.68 58.0 4.75e-01 92.5% 67.5%
4iupA02 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.67 49.0 4.85e-01 77.6% 81.9%
1h3zA00 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.66 57.0 4.87e-01 95.5% 79.6%
4cc2A00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.66 50.0 5.16e-01 79.1% 96.8%
2pqhB00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.66 49.0 5.00e-01 77.6% 86.2%
6uzjA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.66 49.0 5.06e-01 79.1% 93.7%
2eczA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.65 47.0 4.69e-01 76.1% 81.4%
2creA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.65 49.0 4.83e-01 79.1% 84.5%
4iimA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.65 49.0 5.26e-01 79.1% 98.2%
1gcqB00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.65 49.0 5.26e-01 79.1% 100.0%
2egeA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.64 48.0 4.69e-01 80.6% 88.0%
2krsA01 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.64 45.0 4.71e-01 73.1% 100.0%
2i0nA01 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.64 46.0 4.93e-01 76.1% 98.2%
3nmzD00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.63 49.0 4.52e-01 82.1% 70.2%
2epdA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.62 46.0 4.41e-01 77.6% 73.7%
2yrvA01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.62 52.0 4.45e-01 95.5% 64.6%
1y71A00 2.30.30.430 Mainly Beta › Roll › SH3 type barrels. › Kinase associated protein B domain 0.62 56.0 4.69e-01 98.5% 62.4%
1ts9A00 2.30.30.210 Mainly Beta › Roll › SH3 type barrels. › Ribonuclease P/MRP, subunit p29 0.61 46.0 4.07e-01 80.6% 55.1%
2dlpA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.61 48.0 4.46e-01 85.1% 71.8%
1x43A01 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.61 45.0 4.68e-01 79.1% 95.2%
4gnxB00 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.61 48.0 3.96e-01 86.6% 64.8%
1awoA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.60 44.0 4.70e-01 77.6% 98.2%
2daqA00 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.59 51.0 4.39e-01 100.0% 70.9%
5f3yA05 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.59 48.0 4.65e-01 89.6% 93.5%
2cs7A00 3.10.50.90 Alpha Beta › Roll › Chitinase A; domain 3 › 0.57 36.0 3.91e-01 70.1% 78.2%
3pmiA01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.56 46.0 4.69e-01 94.0% 100.0%
2e5kA01 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.55 40.0 4.06e-01 77.6% 96.9%
2arzA02 3.20.180.10 Alpha Beta › Alpha-Beta Barrel › Split barrel-like › PNP-oxidase-like 0.54 39.0 3.54e-01 74.6% 73.9%
1pxfA00 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.54 42.0 3.64e-01 86.6% 86.5%
3pv2A03 2.30.42.10 Mainly Beta › Roll › Pdz3 Domain › PDZ domain 0.54 36.0 3.40e-01 71.6% 79.5%
2cs0A01 3.30.505.10 Alpha Beta › 2-Layer Sandwich › SHC Adaptor Protein › SH2 domain 0.53 37.0 3.31e-01 73.1% 68.4%
2dt8A02 3.30.1180.10 Alpha Beta › 2-Layer Sandwich › Hypothetical Protein Tm841; Chain: A;domain 3 › 0.53 38.0 3.19e-01 79.1% 97.7%
3twkA02 1.10.8.50 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › 0.52 42.0 3.34e-01 92.5% 65.1%
2c9oB02 2.40.50.360 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › RuvBL1 DNA/RNA binding domain 0.52 42.0 3.59e-01 91.0% 73.5%
3i3tA00 3.90.70.10 Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › Cysteine proteinases 0.50 35.0 2.25e-01 71.6% 86.5%
ECOD (80)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4170351 4.1.1.175 beta barrels › SH3 › SH3 › SH3 › MSSS 0.85 54.0 5.20e-01 77.6% 58.7%
3782293 4.1.1.170 beta barrels › SH3 › SH3 › SH3 › Rad9_Rad53_bind 0.85 54.0 5.96e-01 77.6% 80.0%
4432330 4.1.1.175 beta barrels › SH3 › SH3 › SH3 › MSSS 0.84 53.0 6.03e-01 76.1% 86.0%
4030505 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.83 61.0 5.68e-01 76.1% 92.5%
4585317 4.1.1.175 beta barrels › SH3 › SH3 › SH3 › MSSS 0.82 53.0 5.77e-01 77.6% 80.0%
3305577 4.1.1.175 beta barrels › SH3 › SH3 › SH3 › MSSS 0.80 53.0 5.86e-01 79.1% 83.6%
5022745 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.78 59.0 5.04e-01 80.6% 73.3%
5004050 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.77 54.0 5.36e-01 82.1% 70.0%
3243909 4.1.1.25 beta barrels › SH3 › SH3 › SH3 › PAZ 0.76 57.0 4.21e-01 79.1% 52.7%
3507338 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.75 52.0 5.53e-01 80.6% 81.7%
4426216 4.8.1.10 beta barrels › SH3 › Chromo domain-like › Chromo domain-like › MSL3_chromo-like 0.75 57.0 5.18e-01 82.1% 81.1%
3750522 4.1.1.218 beta barrels › SH3 › SH3 › SH3 › PWP3A-B_N 0.74 63.0 5.26e-01 91.0% 81.8%
3226844 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.74 60.0 5.63e-01 94.0% 72.5%
4941620 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.73 58.0 6.16e-01 88.1% 95.0%
4484893 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.72 58.0 5.88e-01 91.0% 87.7%
3557649 4.8.1.20 beta barrels › SH3 › Chromo domain-like › Chromo domain-like › PWP3A-B_N 0.72 62.0 5.25e-01 92.5% 85.7%
3920666 4.1.1.9 beta barrels › SH3 › SH3 › SH3 › TUDOR 0.72 59.0 5.29e-01 100.0% 65.6%
4354770 4.1.1.3 beta barrels › SH3 › SH3 › SH3 › KOW 0.72 58.0 5.76e-01 86.6% 91.4%
1175057 4.1.1.145 beta barrels › SH3 › SH3 › SH3 › Crb2_Tudor 0.72 55.0 4.97e-01 80.6% 69.3%
3580609 4.1.1.3 beta barrels › SH3 › SH3 › SH3 › KOW 0.72 60.0 6.12e-01 94.0% 93.8%
4138563 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.71 58.0 5.94e-01 86.6% 95.4%
5029655 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.71 55.0 5.84e-01 83.6% 91.7%
4644007 4.1.1.3 beta barrels › SH3 › SH3 › SH3 › KOW 0.71 56.0 5.97e-01 88.1% 94.9%
4547820 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.71 59.0 5.02e-01 94.0% 57.1%
3570700 4.1.1.9 beta barrels › SH3 › SH3 › SH3 › TUDOR 0.70 58.0 4.86e-01 100.0% 53.0%
3885050 4.1.1.360 beta barrels › SH3 › SH3 › SH3 › KOW, G-patch_2 0.70 58.0 4.24e-01 92.5% 34.3%
3582834 4.1.1.319 beta barrels › SH3 › SH3 › SH3 › SH3_Hsr9 0.70 53.0 4.63e-01 79.1% 63.2%
145843 4.1.1.12 beta barrels › SH3 › SH3 › SH3 › PWWP 0.70 60.0 5.10e-01 94.0% 76.9%
3550699 4.8.1.10 beta barrels › SH3 › Chromo domain-like › Chromo domain-like › MSL3_chromo-like 0.70 54.0 4.78e-01 82.1% 69.5%
3393358 4.1.1.9 beta barrels › SH3 › SH3 › SH3 › TUDOR 0.70 62.0 5.46e-01 100.0% 68.4%
3254941 4.18.1.1 beta barrels › SH3 › Plus3 › Plus3 › Plus-3 0.69 61.0 4.92e-01 100.0% 60.8%
3939175 4.18.1.1 beta barrels › SH3 › Plus3 › Plus3 › Plus-3 0.69 61.0 4.71e-01 100.0% 52.0%
3837281 4.18.1.1 beta barrels › SH3 › Plus3 › Plus3 › Plus-3 0.69 60.0 4.52e-01 100.0% 46.5%
3484084 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.69 51.0 4.45e-01 77.6% 60.0%
3615113 4.18.1.1 beta barrels › SH3 › Plus3 › Plus3 › Plus-3 0.68 62.0 4.69e-01 100.0% 57.1%
4942163 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.68 57.0 5.87e-01 91.0% 92.3%
4105328 4.1.1.43 beta barrels › SH3 › SH3 › SH3 › SMN_Tudor 0.68 54.0 5.54e-01 89.6% 87.7%
3174427 4.18.1.1 beta barrels › SH3 › Plus3 › Plus3 › Plus-3 0.67 61.0 4.60e-01 100.0% 49.7%
3395901 4.18.1.1 beta barrels › SH3 › Plus3 › Plus3 › Plus-3 0.67 60.0 4.83e-01 100.0% 59.2%
3170251 4.1.1.170 beta barrels › SH3 › SH3 › SH3 › Rad9_Rad53_bind 0.67 61.0 4.69e-01 98.5% 77.1%
3933788 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.67 50.0 5.31e-01 79.1% 88.3%
4983006 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.67 55.0 5.58e-01 92.5% 90.8%
3635435 4.18.1.1 beta barrels › SH3 › Plus3 › Plus3 › Plus-3 0.67 59.0 4.62e-01 100.0% 56.6%
3263489 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.66 53.0 5.38e-01 85.1% 100.0%
3940233 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.66 60.0 5.05e-01 100.0% 65.5%
3787175 4.1.1.12 beta barrels › SH3 › SH3 › SH3 › PWWP 0.66 56.0 4.51e-01 92.5% 87.2%
3543889 604.1.1.0 alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat 0.66 49.0 2.95e-01 79.1% 14.3%
4470603 4.1.1.217 beta barrels › SH3 › SH3 › SH3 › zf-CCCH_4 0.65 59.0 4.38e-01 100.0% 65.5%
4014307 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.65 56.0 4.40e-01 94.0% 74.3%
137916 4.1.1.58 beta barrels › SH3 › SH3 › SH3 › SH3_3 0.65 46.0 4.70e-01 74.6% 93.8%
3696092 4.1.1.1 beta barrels › SH3 › SH3 › SH3 › SH3_1 0.64 56.0 5.56e-01 95.5% 95.7%
4945344 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.64 52.0 3.31e-01 88.1% 22.8%
3755099 604.1.1.97 alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat › SH3_1 0.64 59.0 5.40e-01 100.0% 80.0%
3604145 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.64 51.0 5.34e-01 92.5% 96.7%
3517456 4.1.1.334 beta barrels › SH3 › SH3 › SH3 › SH3_1, SH3_2 0.64 47.0 4.56e-01 77.6% 97.3%
5001903 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.64 53.0 5.24e-01 97.0% 88.6%
3931418 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.64 48.0 5.04e-01 79.1% 95.0%
4953054 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.63 53.0 5.16e-01 98.5% 84.0%
3771628 189.1.1.0 alpha bundles › GTPase activation domain, GAP › GTPase activation domain, GAP › GTPase activation domain, GAP 0.63 47.0 3.00e-01 79.1% 19.4%
3585452 4.1.1.334 beta barrels › SH3 › SH3 › SH3 › SH3_1, SH3_2 0.63 47.0 4.69e-01 79.1% 94.3%
3214149 4.1.1.92 beta barrels › SH3 › SH3 › SH3 › SH3_9 0.63 48.0 4.93e-01 82.1% 95.4%
3883895 4.1.1.54 beta barrels › SH3 › SH3 › SH3 › SH3_2 0.63 52.0 4.60e-01 92.5% 79.0%
3572647 4.1.1.227 beta barrels › SH3 › SH3 › SH3 › PWWP_KDM3B 0.63 55.0 5.04e-01 100.0% 84.4%
3476478 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.62 56.0 4.98e-01 100.0% 69.5%
3213215 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.62 51.0 4.40e-01 95.5% 72.2%
3522910 4.1.1.92 beta barrels › SH3 › SH3 › SH3 › SH3_9 0.62 52.0 5.00e-01 91.0% 89.3%
3267416 4.1.1.1 beta barrels › SH3 › SH3 › SH3 › SH3_1 0.62 51.0 4.87e-01 91.0% 80.0%
4445574 4.1.1.361 beta barrels › SH3 › SH3 › SH3 › Tudor_KDM3B, PWWP_KDM3B, DUF7030 0.61 51.0 3.63e-01 100.0% 31.9%
165220 4.1.1.54 beta barrels › SH3 › SH3 › SH3 › SH3_2 0.61 44.0 4.34e-01 77.6% 79.5%
3585447 4.1.1.1 beta barrels › SH3 › SH3 › SH3 › SH3_1 0.60 54.0 5.12e-01 100.0% 88.7%
3434498 4.1.1.12 beta barrels › SH3 › SH3 › SH3 › PWWP 0.59 50.0 4.45e-01 100.0% 76.0%
3539094 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.56 47.0 4.49e-01 95.5% 96.2%
4676141 2003.1.2.49 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain › FAD_binding_2+FAD_binding_3 0.55 40.0 2.71e-01 76.1% 55.6%
3657113 2.1.1.0 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.55 44.0 3.65e-01 88.1% 64.2%
5004725 302.4.1.0 a+b two layers › Reverse ferredoxin › a+b domain in Acetophenone carboxylase (Apc) alpha subunit › a+b domain in Acetophenone carboxylase (Apc) alpha subunit 0.55 42.0 3.67e-01 83.6% 61.9%
5059406 220.1.1.291 beta barrels › PH domain-like › PH domain-like › PH domain-like › bPH_4 0.54 41.0 4.03e-01 85.1% 98.7%
3394961 2.1.1.188 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › CSDE1 0.52 37.0 3.53e-01 76.1% 70.0%
3529004 219.1.1.3 a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › UCH 0.51 35.0 2.22e-01 71.6% 85.5%
3962565 2.1.1.0 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.51 35.0 3.17e-01 74.6% 53.0%
3748846 4.1.1.1 beta barrels › SH3 › SH3 › SH3 › SH3_1 0.50 34.0 3.47e-01 70.1% 72.3%