Back to structures

ERMGT119_2_scaffold_6_prodigal-single.1__X__X__00276

Bact-Vir

ERMGT119_2_scaffold_6_prodigal-single.1__X__X__00276

Identity

Kingdom:
phage

Quality

74.8 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 5-61
PDB
Domain cluster: representative
CATH (28)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1z2qA00 3.30.40.10 Alpha Beta › 2-Layer Sandwich › Herpes Virus-1 › Zinc/RING finger domain, C3HC4 (zinc finger) 0.86 66.0 5.68e-01 80.7% 69.0%
1zbdB00 3.30.40.10 Alpha Beta › 2-Layer Sandwich › Herpes Virus-1 › Zinc/RING finger domain, C3HC4 (zinc finger) 0.84 62.0 4.76e-01 78.9% 43.9%
1x4uA01 3.30.40.10 Alpha Beta › 2-Layer Sandwich › Herpes Virus-1 › Zinc/RING finger domain, C3HC4 (zinc finger) 0.84 62.0 5.81e-01 78.9% 91.3%
3t7lA00 3.30.40.10 Alpha Beta › 2-Layer Sandwich › Herpes Virus-1 › Zinc/RING finger domain, C3HC4 (zinc finger) 0.82 65.0 5.90e-01 84.2% 78.4%
2zetC00 3.30.40.10 Alpha Beta › 2-Layer Sandwich › Herpes Virus-1 › Zinc/RING finger domain, C3HC4 (zinc finger) 0.80 64.0 4.66e-01 84.2% 38.3%
1wfkA01 3.30.40.10 Alpha Beta › 2-Layer Sandwich › Herpes Virus-1 › Zinc/RING finger domain, C3HC4 (zinc finger) 0.80 60.0 5.45e-01 80.7% 74.0%
5y20A00 3.30.40.10 Alpha Beta › 2-Layer Sandwich › Herpes Virus-1 › Zinc/RING finger domain, C3HC4 (zinc finger) 0.71 49.0 5.06e-01 73.7% 98.1%
3o70A00 3.30.40.10 Alpha Beta › 2-Layer Sandwich › Herpes Virus-1 › Zinc/RING finger domain, C3HC4 (zinc finger) 0.70 49.0 5.00e-01 75.4% 89.1%
2m85A00 3.30.40.10 Alpha Beta › 2-Layer Sandwich › Herpes Virus-1 › Zinc/RING finger domain, C3HC4 (zinc finger) 0.68 48.0 4.65e-01 75.4% 81.5%
1wysA00 4.10.1110.10 Few Secondary Structures › Irregular › Zf-an1 domain › AN1-like Zinc finger 0.68 45.0 4.11e-01 75.4% 52.0%
4kfzA02 2.10.110.10 Mainly Beta › Ribbon › Cysteine Rich Protein › Cysteine Rich Protein 0.67 50.0 4.80e-01 80.7% 86.2%
1wevA01 3.30.40.10 Alpha Beta › 2-Layer Sandwich › Herpes Virus-1 › Zinc/RING finger domain, C3HC4 (zinc finger) 0.67 49.0 4.73e-01 78.9% 90.6%
2xocA01 3.30.40.140 Alpha Beta › 2-Layer Sandwich › Herpes Virus-1 › 0.66 44.0 4.01e-01 70.2% 92.3%
2co8A00 2.10.110.10 Mainly Beta › Ribbon › Cysteine Rich Protein › Cysteine Rich Protein 0.65 43.0 3.84e-01 89.5% 47.6%
1wemA00 3.30.40.10 Alpha Beta › 2-Layer Sandwich › Herpes Virus-1 › Zinc/RING finger domain, C3HC4 (zinc finger) 0.64 46.0 4.27e-01 78.9% 82.9%
2vp7A00 3.30.40.10 Alpha Beta › 2-Layer Sandwich › Herpes Virus-1 › Zinc/RING finger domain, C3HC4 (zinc finger) 0.64 45.0 4.34e-01 75.4% 86.4%
3v43A00 3.30.40.10 Alpha Beta › 2-Layer Sandwich › Herpes Virus-1 › Zinc/RING finger domain, C3HC4 (zinc finger) 0.63 46.0 3.78e-01 80.7% 45.5%
2yt5A00 3.30.40.10 Alpha Beta › 2-Layer Sandwich › Herpes Virus-1 › Zinc/RING finger domain, C3HC4 (zinc finger) 0.62 45.0 4.38e-01 78.9% 86.4%
2xb1A00 3.30.40.10 Alpha Beta › 2-Layer Sandwich › Herpes Virus-1 › Zinc/RING finger domain, C3HC4 (zinc finger) 0.62 52.0 4.51e-01 100.0% 79.2%
2xzmZ00 3.30.1230.20 Alpha Beta › 2-Layer Sandwich › Hypothetical Cytosolic Protein; Chain: A; › Ribosomal protein S21 0.62 42.0 3.61e-01 71.9% 57.7%
1wewA00 3.30.40.10 Alpha Beta › 2-Layer Sandwich › Herpes Virus-1 › Zinc/RING finger domain, C3HC4 (zinc finger) 0.61 45.0 4.11e-01 78.9% 76.9%
2ku3A00 3.30.40.10 Alpha Beta › 2-Layer Sandwich › Herpes Virus-1 › Zinc/RING finger domain, C3HC4 (zinc finger) 0.60 46.0 4.56e-01 84.2% 87.1%
2iybE00 2.10.110.10 Mainly Beta › Ribbon › Cysteine Rich Protein › Cysteine Rich Protein 0.60 43.0 4.21e-01 78.9% 87.5%
4qf3A00 3.30.40.10 Alpha Beta › 2-Layer Sandwich › Herpes Virus-1 › Zinc/RING finger domain, C3HC4 (zinc finger) 0.60 44.0 4.42e-01 78.9% 91.2%
4e1pA00 3.30.60.230 Alpha Beta › 2-Layer Sandwich › Wheat Germ Agglutinin (Isolectin 2); domain 1 › Lsr2, dimerisation domain 0.59 43.0 4.43e-01 89.5% 81.8%
1weeA00 3.30.40.10 Alpha Beta › 2-Layer Sandwich › Herpes Virus-1 › Zinc/RING finger domain, C3HC4 (zinc finger) 0.59 42.0 3.98e-01 77.2% 77.8%
3goxA02 3.30.60.130 Alpha Beta › 2-Layer Sandwich › Wheat Germ Agglutinin (Isolectin 2); domain 1 › 0.56 40.0 4.12e-01 91.2% 79.6%
3g2bA00 1.10.10.1150 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Coenzyme PQQ synthesis protein D (PqqD) 0.50 31.0 2.72e-01 77.2% 37.8%
ECOD (89)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3718357 376.1.3.0 few secondary structure elements › RING/U-box-like › RING/U-box-like › FYVE/PHD zinc finger 0.90 62.0 6.87e-01 71.9% 100.0%
3592936 376.1.3.0 few secondary structure elements › RING/U-box-like › RING/U-box-like › FYVE/PHD zinc finger 0.89 68.0 6.28e-01 80.7% 85.7%
3599415 376.1.3.0 few secondary structure elements › RING/U-box-like › RING/U-box-like › FYVE/PHD zinc finger 0.88 68.0 6.26e-01 80.7% 82.9%
3918190 376.1.3.0 few secondary structure elements › RING/U-box-like › RING/U-box-like › FYVE/PHD zinc finger 0.88 67.0 5.19e-01 80.7% 98.3%
3703254 376.1.3.3 few secondary structure elements › RING/U-box-like › RING/U-box-like › FYVE/PHD zinc finger › FYVE 0.87 69.0 6.10e-01 84.2% 77.5%
3859342 376.1.3.0 few secondary structure elements › RING/U-box-like › RING/U-box-like › FYVE/PHD zinc finger 0.87 65.0 6.42e-01 78.9% 81.7%
5031333 376.1.3.0 few secondary structure elements › RING/U-box-like › RING/U-box-like › FYVE/PHD zinc finger 0.87 59.0 6.53e-01 70.2% 95.6%
5074886 376.1.3.0 few secondary structure elements › RING/U-box-like › RING/U-box-like › FYVE/PHD zinc finger 0.87 60.0 5.57e-01 71.9% 60.0%
3176507 376.1.3.3 few secondary structure elements › RING/U-box-like › RING/U-box-like › FYVE/PHD zinc finger › FYVE 0.87 61.0 5.38e-01 73.7% 81.2%
3593722 376.1.3.0 few secondary structure elements › RING/U-box-like › RING/U-box-like › FYVE/PHD zinc finger 0.86 64.0 6.34e-01 78.9% 96.7%
3263261 376.1.3.0 few secondary structure elements › RING/U-box-like › RING/U-box-like › FYVE/PHD zinc finger 0.86 60.0 6.80e-01 73.7% 100.0%
3597323 376.1.3.0 few secondary structure elements › RING/U-box-like › RING/U-box-like › FYVE/PHD zinc finger 0.86 64.0 5.78e-01 78.9% 73.3%
3607878 376.1.3.0 few secondary structure elements › RING/U-box-like › RING/U-box-like › FYVE/PHD zinc finger 0.85 64.0 5.50e-01 78.9% 96.5%
3393209 376.1.3.0 few secondary structure elements › RING/U-box-like › RING/U-box-like › FYVE/PHD zinc finger 0.85 63.0 6.99e-01 84.2% 100.0%
3608274 376.1.3.0 few secondary structure elements › RING/U-box-like › RING/U-box-like › FYVE/PHD zinc finger 0.85 64.0 6.59e-01 80.7% 94.5%
3493565 376.1.3.3 few secondary structure elements › RING/U-box-like › RING/U-box-like › FYVE/PHD zinc finger › FYVE 0.85 64.0 5.98e-01 80.7% 81.4%
3715785 376.1.3.3 few secondary structure elements › RING/U-box-like › RING/U-box-like › FYVE/PHD zinc finger › FYVE 0.85 64.0 5.71e-01 80.7% 77.2%
3489181 376.1.3.0 few secondary structure elements › RING/U-box-like › RING/U-box-like › FYVE/PHD zinc finger 0.85 67.0 6.22e-01 84.2% 77.1%
3598893 376.1.3.0 few secondary structure elements › RING/U-box-like › RING/U-box-like › FYVE/PHD zinc finger 0.84 60.0 5.95e-01 75.4% 95.0%
3898766 376.1.3.3 few secondary structure elements › RING/U-box-like › RING/U-box-like › FYVE/PHD zinc finger › FYVE 0.84 61.0 6.25e-01 77.2% 96.4%
3478913 376.1.3.4 few secondary structure elements › RING/U-box-like › RING/U-box-like › FYVE/PHD zinc finger › FYVE_2 0.84 64.0 5.52e-01 80.7% 61.2%
3900403 376.1.3.0 few secondary structure elements › RING/U-box-like › RING/U-box-like › FYVE/PHD zinc finger 0.84 63.0 6.43e-01 78.9% 90.9%
3928425 376.1.3.3 few secondary structure elements › RING/U-box-like › RING/U-box-like › FYVE/PHD zinc finger › FYVE 0.84 62.0 5.40e-01 78.9% 68.2%
3274457 376.1.3.3 few secondary structure elements › RING/U-box-like › RING/U-box-like › FYVE/PHD zinc finger › FYVE 0.84 62.0 3.81e-01 78.9% 18.1%
3235494 376.1.3.3 few secondary structure elements › RING/U-box-like › RING/U-box-like › FYVE/PHD zinc finger › FYVE 0.84 61.0 6.19e-01 77.2% 100.0%
3472338 376.1.3.0 few secondary structure elements › RING/U-box-like › RING/U-box-like › FYVE/PHD zinc finger 0.83 63.0 6.23e-01 80.7% 86.7%
3547416 376.1.3.21 few secondary structure elements › RING/U-box-like › RING/U-box-like › FYVE/PHD zinc finger › FYVE_CARP1-2 0.83 59.0 6.07e-01 75.4% 83.6%
3739083 376.1.3.3 few secondary structure elements › RING/U-box-like › RING/U-box-like › FYVE/PHD zinc finger › FYVE 0.83 65.0 5.92e-01 84.2% 78.7%
3704117 376.1.3.3 few secondary structure elements › RING/U-box-like › RING/U-box-like › FYVE/PHD zinc finger › FYVE 0.83 63.0 5.72e-01 80.7% 74.7%
3701012 376.1.3.3 few secondary structure elements › RING/U-box-like › RING/U-box-like › FYVE/PHD zinc finger › FYVE 0.83 62.0 5.83e-01 80.7% 82.9%
158761 376.1.3.3 few secondary structure elements › RING/U-box-like › RING/U-box-like › FYVE/PHD zinc finger › FYVE 0.83 62.0 5.45e-01 80.7% 76.2%
3171356 376.1.3.3 few secondary structure elements › RING/U-box-like › RING/U-box-like › FYVE/PHD zinc finger › FYVE 0.83 61.0 5.34e-01 78.9% 84.7%
3847015 192.7.1.79 alpha bundles › Long alpha-hairpin › tRNA-binding arm › tRNA-binding arm › FYVE_2 0.83 63.0 6.19e-01 80.7% 86.7%
3922987 376.1.3.3 few secondary structure elements › RING/U-box-like › RING/U-box-like › FYVE/PHD zinc finger › FYVE 0.83 64.0 6.10e-01 82.5% 87.7%
3881136 376.1.3.0 few secondary structure elements › RING/U-box-like › RING/U-box-like › FYVE/PHD zinc finger 0.82 61.0 6.48e-01 78.9% 96.0%
3717537 376.1.3.0 few secondary structure elements › RING/U-box-like › RING/U-box-like › FYVE/PHD zinc finger 0.82 62.0 6.34e-01 80.7% 89.1%
3418503 376.1.3.3 few secondary structure elements › RING/U-box-like › RING/U-box-like › FYVE/PHD zinc finger › FYVE 0.82 64.0 5.85e-01 84.2% 82.7%
3611712 376.1.3.0 few secondary structure elements › RING/U-box-like › RING/U-box-like › FYVE/PHD zinc finger 0.81 60.0 5.97e-01 78.9% 91.7%
3309565 376.1.3.3 few secondary structure elements › RING/U-box-like › RING/U-box-like › FYVE/PHD zinc finger › FYVE 0.81 63.0 5.63e-01 84.2% 82.5%
3705738 376.1.3.0 few secondary structure elements › RING/U-box-like › RING/U-box-like › FYVE/PHD zinc finger 0.81 62.0 6.14e-01 82.5% 90.0%
3481328 376.1.3.0 few secondary structure elements › RING/U-box-like › RING/U-box-like › FYVE/PHD zinc finger 0.80 62.0 5.56e-01 84.2% 73.8%
5069949 376.1.3.0 few secondary structure elements › RING/U-box-like › RING/U-box-like › FYVE/PHD zinc finger 0.80 61.0 6.42e-01 80.7% 94.0%
8121 376.1.3.3 few secondary structure elements › RING/U-box-like › RING/U-box-like › FYVE/PHD zinc finger › FYVE 0.80 60.0 5.20e-01 80.7% 64.8%
3907189 376.1.3.3 few secondary structure elements › RING/U-box-like › RING/U-box-like › FYVE/PHD zinc finger › FYVE 0.80 62.0 5.21e-01 84.2% 63.2%
3815866 376.1.3.3 few secondary structure elements › RING/U-box-like › RING/U-box-like › FYVE/PHD zinc finger › FYVE 0.80 59.0 5.81e-01 78.9% 98.3%
3849360 376.1.3.23 few secondary structure elements › RING/U-box-like › RING/U-box-like › FYVE/PHD zinc finger › RIM2a_ZnF 0.78 59.0 5.37e-01 80.7% 77.3%
3931367 376.1.3.0 few secondary structure elements › RING/U-box-like › RING/U-box-like › FYVE/PHD zinc finger 0.76 51.0 4.61e-01 70.2% 65.0%
3592438 376.1.3.0 few secondary structure elements › RING/U-box-like › RING/U-box-like › FYVE/PHD zinc finger 0.75 67.0 5.53e-01 100.0% 87.0%
3411782 376.1.3.0 few secondary structure elements › RING/U-box-like › RING/U-box-like › FYVE/PHD zinc finger 0.74 54.0 5.48e-01 77.2% 100.0%
3395303 376.1.3.0 few secondary structure elements › RING/U-box-like › RING/U-box-like › FYVE/PHD zinc finger 0.74 52.0 4.81e-01 75.4% 73.3%
2409922 376.1.3.1 few secondary structure elements › RING/U-box-like › RING/U-box-like › FYVE/PHD zinc finger › PHD 0.74 51.0 4.53e-01 73.7% 63.1%
3706704 376.1.3.3 few secondary structure elements › RING/U-box-like › RING/U-box-like › FYVE/PHD zinc finger › FYVE 0.74 63.0 5.54e-01 96.5% 90.6%
3273422 376.1.3.0 few secondary structure elements › RING/U-box-like › RING/U-box-like › FYVE/PHD zinc finger 0.73 44.0 5.08e-01 86.0% 97.1%
3594333 376.1.2.0 few secondary structure elements › RING/U-box-like › RING/U-box-like › Cysteine-rich domain 0.73 45.0 5.14e-01 71.9% 90.0%
3292736 376.1.3.1 few secondary structure elements › RING/U-box-like › RING/U-box-like › FYVE/PHD zinc finger › PHD 0.71 50.0 4.97e-01 75.4% 86.7%
2714469 376.1.3.3 few secondary structure elements › RING/U-box-like › RING/U-box-like › FYVE/PHD zinc finger › FYVE 0.71 53.0 4.79e-01 80.7% 74.4%
3214194 376.1.3.1 few secondary structure elements › RING/U-box-like › RING/U-box-like › FYVE/PHD zinc finger › PHD 0.71 51.0 4.96e-01 78.9% 90.8%
3208844 376.1.3.0 few secondary structure elements › RING/U-box-like › RING/U-box-like › FYVE/PHD zinc finger 0.71 48.0 4.60e-01 70.2% 96.9%
3471550 377.1.1.0 few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › LIM domain-like 0.70 43.0 5.05e-01 86.0% 100.0%
4976002 377.1.1.0 few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › LIM domain-like 0.69 46.0 5.21e-01 73.7% 100.0%
3242100 376.1.5.0 few secondary structure elements › RING/U-box-like › RING/U-box-like › AN1-like Zinc finger 0.69 44.0 4.55e-01 91.2% 69.1%
3363358 376.1.3.1 few secondary structure elements › RING/U-box-like › RING/U-box-like › FYVE/PHD zinc finger › PHD 0.68 46.0 4.88e-01 71.9% 100.0%
4959094 377.1.1.0 few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › LIM domain-like 0.68 47.0 4.86e-01 73.7% 81.8%
3929292 376.1.3.0 few secondary structure elements › RING/U-box-like › RING/U-box-like › FYVE/PHD zinc finger 0.68 48.0 5.05e-01 75.4% 100.0%
3938951 376.1.3.0 few secondary structure elements › RING/U-box-like › RING/U-box-like › FYVE/PHD zinc finger 0.65 55.0 5.29e-01 94.7% 100.0%
2117614 376.1.3.1 few secondary structure elements › RING/U-box-like › RING/U-box-like › FYVE/PHD zinc finger › PHD 0.64 51.0 4.27e-01 87.7% 74.3%
5076504 376.1.1.183 few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › Prok-RING_1 0.64 43.0 4.53e-01 75.4% 80.0%
3712859 377.1.1.0 few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › LIM domain-like 0.64 42.0 4.68e-01 80.7% 95.0%
4025116 376.1.1.11 few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › COPI_C 0.63 46.0 4.53e-01 91.2% 75.0%
3737200 376.1.3.1 few secondary structure elements › RING/U-box-like › RING/U-box-like › FYVE/PHD zinc finger › PHD 0.63 44.0 4.42e-01 77.2% 96.7%
3831215 376.1.3.0 few secondary structure elements › RING/U-box-like › RING/U-box-like › FYVE/PHD zinc finger 0.63 46.0 4.71e-01 80.7% 94.5%
4015811 376.1.3.0 few secondary structure elements › RING/U-box-like › RING/U-box-like › FYVE/PHD zinc finger 0.63 45.0 4.63e-01 78.9% 96.4%
3926105 376.1.3.1 few secondary structure elements › RING/U-box-like › RING/U-box-like › FYVE/PHD zinc finger › PHD 0.61 48.0 4.38e-01 87.7% 88.7%
3268019 376.1.1.21 few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-RING_2 0.61 42.0 4.13e-01 86.0% 66.2%
3436977 376.1.1.21 few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-RING_2 0.61 43.0 3.84e-01 77.2% 56.5%
3487815 376.1.3.0 few secondary structure elements › RING/U-box-like › RING/U-box-like › FYVE/PHD zinc finger 0.60 44.0 4.50e-01 78.9% 98.2%
3598442 376.1.1.78 few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › Zf_2nd_IFT121 0.59 43.0 4.63e-01 93.0% 100.0%
3417508 376.1.3.1 few secondary structure elements › RING/U-box-like › RING/U-box-like › FYVE/PHD zinc finger › PHD 0.59 39.0 4.13e-01 70.2% 100.0%
3324238 376.1.1.27 few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-RING_5 0.59 46.0 4.68e-01 91.2% 90.9%
3306311 376.1.3.9 few secondary structure elements › RING/U-box-like › RING/U-box-like › FYVE/PHD zinc finger › PHD_2 0.58 42.0 4.35e-01 78.9% 96.0%
3610400 376.1.3.0 few secondary structure elements › RING/U-box-like › RING/U-box-like › FYVE/PHD zinc finger 0.58 41.0 3.79e-01 75.4% 100.0%
3790267 376.1.1.21 few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-RING_2 0.58 41.0 3.77e-01 82.5% 57.3%
4359679 376.1.1.37 few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › SLX1_C 0.56 48.0 4.55e-01 98.2% 92.9%
3635719 376.1.1.1 few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-C3HC4 0.55 44.0 4.01e-01 91.2% 85.0%
3224677 376.1.1.21 few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-RING_2 0.55 42.0 4.16e-01 91.2% 81.7%
3221156 376.1.1.21 few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-RING_2 0.53 41.0 4.20e-01 100.0% 94.5%
3626567 376.1.1.0 few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box 0.52 41.0 3.83e-01 91.2% 98.7%
3389025 376.1.1.1 few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-C3HC4 0.52 39.0 4.12e-01 91.2% 100.0%
5071881 376.1.1.21 few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-RING_2 0.51 41.0 4.14e-01 98.2% 93.3%