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ERMGT119_2_scaffold_6_prodigal-single.1__X__X__00286
Bact-VirERMGT119_2_scaffold_6_prodigal-single.1__X__X__00286
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
medium
residues 1-52
Domain cluster:
representative
CATH (6)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1fm2B03 | 2.30.120.10 | Mainly Beta › Roll › Penicillin G acylase, beta-roll domain › Aminohydrolase, N-terminal nucleophile (Ntn) domain, beta-sheet knob region | 0.67 | 36.0 | 3.37e-01 | 84.6% | 39.4% |
| 4wksC02 | 2.30.120.10 | Mainly Beta › Roll › Penicillin G acylase, beta-roll domain › Aminohydrolase, N-terminal nucleophile (Ntn) domain, beta-sheet knob region | 0.60 | 37.0 | 3.31e-01 | 76.9% | 40.0% |
| 1e62A01 | 2.40.30.10 | Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors | 0.54 | 35.0 | 2.79e-01 | 78.8% | 27.3% |
| 4kt5C00 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.54 | 33.0 | 2.84e-01 | 96.2% | 33.0% |
| 4bqqB02 | 3.90.1750.20 | Alpha Beta › Alpha-Beta Complex › Hect, E3 ligase catalytic domain fold › Putative Large Serine Recombinase; Chain B, Domain 2 | 0.52 | 40.0 | 2.92e-01 | 96.2% | 37.9% |
| 2yfsA01 | 2.115.10.20 | Mainly Beta › 5 Propeller › Tachylectin-2; Chain A › Glycosyl hydrolase domain; family 43 | 0.50 | 35.0 | 2.10e-01 | 76.9% | 23.1% |
ECOD (8)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3459960 | 304.9.1.57 ↗ | a+b two layers › Alpha-beta plaits › RNA-binding domain, RBD › RNA-binding domain, RBD › zf-CCHC_4 | 0.55 | 38.0 | 3.13e-01 | 86.5% | 37.1% |
| 3804865 | 207.1.1.55 ↗ | beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats › LRR_1,LRR_8 | 0.53 | 44.0 | 2.64e-01 | 98.1% | 16.1% |
| 4923380 | 304.51.1.6 ↗ | a+b two layers › Alpha-beta plaits › CRISPR transcript (pre-crRNA) processing endoribonuclease-related › CRISPR transcript (pre-crRNA) processing endoribonuclease-related › Cas_Cmr3 | 0.53 | 34.0 | 2.86e-01 | 94.2% | 34.8% |
| 3663353 | 222.1.1.20 ↗ | a+b two layers › Thioesterase/thiol ester dehydrase-isomerase-like › Thioesterase/thiol ester dehydrase-isomerase › Thioesterase/thiol ester dehydrase-isomerase › MFE-2_hydrat-2_N | 0.53 | 33.0 | 2.32e-01 | 76.9% | 16.8% |
| 3628577 | 304.112.1.0 ↗ | a+b two layers › Alpha-beta plaits › Argonaute, N-terminal domain › Argonaute, N-terminal domain | 0.52 | 39.0 | 2.93e-01 | 90.4% | 32.4% |
| 4857726 | 704.1.1.0 ↗ | beta complex topology › Coronavirus RNA-binding domain (N-terminal part of Pfam 00937) › Coronavirus RNA-binding domain (N-terminal part of Pfam 00937) › Coronavirus RNA-binding domain (N-terminal part of Pfam 00937) | 0.51 | 44.0 | 3.40e-01 | 100.0% | 71.8% |
| 3559186 | 922.1.1.7 ↗ | few secondary structure elements › TSP-1 type 1 repeat › TSP-1 type 1 repeat › TSP-1 type 1 repeat › TSP1_ADAMTS | 0.51 | 35.0 | 3.82e-01 | 75.0% | 97.5% |
| 3939681 | 5001.1.1.41 ↗ | alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › 7TM_GPCR_Srw | 0.50 | 36.0 | 2.32e-01 | 84.6% | 13.0% |
D2
medium
residues 53-152
Domain cluster:
representative
CATH (3)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1ibcB00 | 3.30.70.1470 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Caspase-like | 0.52 | 32.0 | 3.34e-01 | 94.0% | 65.9% |
| 2q0iA00 | 3.60.15.10 | Alpha Beta › 4-Layer Sandwich › Metallo-beta-lactamase; Chain A › Ribonuclease Z/Hydroxyacylglutathione hydrolase-like | 0.52 | 40.0 | 2.91e-01 | 84.0% | 44.7% |
| 3ceqA00 | 1.25.40.10 | Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain | 0.51 | 31.0 | 2.32e-01 | 92.0% | 24.8% |