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ERMGT119_2_scaffold_6_prodigal-single.1__X__X__00289
Bact-VirERMGT119_2_scaffold_6_prodigal-single.1__X__X__00289
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 12-33_47-106
Domain cluster:
rep: DGJ7_scaffold_2_2069_prodigal-single.1__X__X__00350__D5-56_136-190
CATH (12)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4l69A01 | 2.40.240.20 | Mainly Beta › Beta Barrel › Ribosomal Protein L25; Chain P › Hypothetical PUA domain-like; domain 1 | 0.56 | 31.0 | 3.39e-01 | 100.0% | 63.2% |
| 3w1oA00 | 3.40.1760.20 | Alpha Beta › 3-Layer(aba) Sandwich › Hypothetical protein yfbM fold › | 0.56 | 48.0 | 4.39e-01 | 100.0% | 99.1% |
| 4chkB00 | 3.10.20.90 | Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1 | 0.55 | 34.0 | 3.35e-01 | 98.8% | 56.0% |
| 3m8eA00 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.55 | 44.0 | 4.20e-01 | 91.5% | 77.2% |
| 4q6bA01 | 3.40.50.2300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator | 0.54 | 41.0 | 3.13e-01 | 81.7% | 55.2% |
| 2zxyA00 | 1.10.760.10 | Mainly Alpha › Orthogonal Bundle › Cytochrome Bc1 Complex; Chain D, domain 2 › Cytochrome c-like domain | 0.53 | 46.0 | 4.54e-01 | 100.0% | 94.2% |
| 4e72A02 | 3.90.640.20 | Alpha Beta › Alpha-Beta Complex › Actin; Chain A, domain 4 › Heat-shock cognate protein, ATPase | 0.53 | 35.0 | 3.44e-01 | 98.8% | 60.6% |
| 4c9yA00 | 1.10.10.1890 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Ska1 microtubule binding domain-like | 0.52 | 44.0 | 3.94e-01 | 98.8% | 98.4% |
| 3hi0A02 | 3.30.420.150 | Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › Exopolyphosphatase. Domain 2 | 0.51 | 43.0 | 3.49e-01 | 100.0% | 89.1% |
| 2kilA00 | 3.90.1520.10 | Alpha Beta › Alpha-Beta Complex › H-NOX domain › H-NOX domain | 0.51 | 42.0 | 3.36e-01 | 95.1% | 76.8% |
| 3r5dA01 | 3.30.70.2010 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.51 | 43.0 | 3.80e-01 | 98.8% | 67.4% |
| 2v84A01 | 3.40.190.10 | Alpha Beta › 3-Layer(aba) Sandwich › D-Maltodextrin-Binding Protein; domain 2 › Periplasmic binding protein-like II | 0.50 | 42.0 | 3.40e-01 | 93.9% | 90.1% |
ECOD (15)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3826256 | 101.1.2.303 ↗ | alpha arrays › HTH › HTH › winged helix domain › RPC5 | 0.57 | 40.0 | 3.96e-01 | 80.5% | 67.8% |
| 5013330 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.57 | 43.0 | 4.25e-01 | 84.1% | 88.9% |
| 3397826 | 2498.1.1.53 ↗ | mixed a+b and a/b › Zincin-like › "Metalloproteases (""zincins"") catalytic domain" › "Metalloproteases (""zincins"") catalytic domain" › Peptidase_M13 | 0.56 | 46.0 | 2.87e-01 | 98.8% | 34.2% |
| 4623762 | 3018.1.1.1 ↗ | a+b two layers › MesJ substrate recognition domain-like › MesJ substrate recognition domain-like › MesJ substrate recognition domain-like › TilS | 0.54 | 38.0 | 3.65e-01 | 75.6% | 98.0% |
| 3246909 | 101.1.2.73 ↗ | alpha arrays › HTH › HTH › winged helix domain › RNA_pol_Rpc82 | 0.54 | 46.0 | 4.36e-01 | 97.6% | 91.0% |
| 3742321 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.53 | 41.0 | 3.86e-01 | 85.4% | 96.1% |
| 4626680 | 101.1.2.170 ↗ | alpha arrays › HTH › HTH › winged helix domain › HTH_51 | 0.52 | 40.0 | 3.67e-01 | 82.9% | 64.5% |
| 3202609 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.52 | 44.0 | 4.10e-01 | 98.8% | 76.4% |
| 3874897 | 320.4.1.5 ↗ | a+b two layers › R3H domain-like › PUB domain › PUB domain › Gasdermin_C | 0.52 | 43.0 | 3.39e-01 | 96.3% | 48.7% |
| 3783568 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.52 | 39.0 | 4.16e-01 | 85.4% | 100.0% |
| 5059215 | 2003.1.5.81 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › Methyltransf_25 | 0.51 | 42.0 | 3.04e-01 | 95.1% | 82.5% |
| 4967032 | 2003.1.5.81 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › Methyltransf_25 | 0.51 | 45.0 | 3.19e-01 | 97.6% | 37.3% |
| 3804517 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.51 | 35.0 | 3.52e-01 | 73.2% | 70.6% |
| 5028439 | 2003.1.5.50 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › TylF | 0.51 | 40.0 | 3.11e-01 | 91.5% | 79.4% |
| 3444347 | 323.1.1.7 ↗ | a+b complex topology › CoA-dependent acyltransferases › CoA-dependent acyltransferases › CoA-dependent acyltransferases › Transferase | 0.50 | 40.0 | 2.82e-01 | 89.0% | 69.3% |