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ERMGT119_2_scaffold_6_prodigal-single.1__X__X__00301
Bact-VirERMGT119_2_scaffold_6_prodigal-single.1__X__X__00301
Identity
- Kingdom:
- phage
Quality
86.9
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 3-38
Domain cluster:
representative
CATH (17)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1vq8I00 | 1.10.10.250 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Ribosomal protein L11/L12, C-terminal domain | 0.81 | 66.0 | 5.50e-01 | 100.0% | 61.4% |
| 5mmiJ02 | 1.10.10.250 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Ribosomal protein L11/L12, C-terminal domain | 0.80 | 66.0 | 5.47e-01 | 100.0% | 62.3% |
| 2bl0B01 | 1.10.238.10 | Mainly Alpha › Orthogonal Bundle › Recoverin; domain 1 › EF-hand | 0.71 | 53.0 | 4.47e-01 | 88.9% | 100.0% |
| 1l8qA01 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.58 | 45.0 | 3.09e-01 | 100.0% | 22.4% |
| 1mjhB00 | 3.40.50.620 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › HUPs | 0.56 | 49.0 | 3.23e-01 | 100.0% | 35.4% |
| 2nwhA00 | 3.40.1190.20 | Alpha Beta › 3-Layer(aba) Sandwich › UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase › Ribokinase | 0.56 | 42.0 | 2.52e-01 | 88.9% | 79.8% |
| 3obyA03 | 3.30.1330.30 | Alpha Beta › 2-Layer Sandwich › 60s Ribosomal Protein L30; Chain: A; › Ribosomal protein L30/S12 | 0.56 | 44.0 | 3.32e-01 | 100.0% | 34.3% |
| 4e2aA00 | 3.40.630.30 | Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) | 0.55 | 40.0 | 2.77e-01 | 94.4% | 20.6% |
| 1ak2A00 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.55 | 43.0 | 2.71e-01 | 91.7% | 49.5% |
| 1zunB01 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.55 | 41.0 | 2.67e-01 | 91.7% | 34.3% |
| 7ktrB01 | 1.25.40.500 | Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › TFIID subunit TAF5, NTD2 domain | 0.54 | 43.0 | 3.03e-01 | 97.2% | 26.5% |
| 3npdA00 | 3.30.300.250 | Alpha Beta › 2-Layer Sandwich › GMP Synthetase; Chain A, domain 3 › | 0.54 | 43.0 | 3.17e-01 | 100.0% | 49.6% |
| 3gvpA02 | 3.40.50.720 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain | 0.53 | 41.0 | 2.79e-01 | 94.4% | 21.4% |
| 1a97B00 | 3.40.50.2020 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › | 0.52 | 39.0 | 2.80e-01 | 100.0% | 90.5% |
| 3oesA00 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.52 | 41.0 | 2.84e-01 | 100.0% | 31.8% |
| 3bmbA01 | 1.10.286.20 | Mainly Alpha › Orthogonal Bundle › GTP Cyclohydrolase I; Chain A, domain 1 › | 0.52 | 43.0 | 4.18e-01 | 100.0% | 90.7% |
| 3wv4A00 | 3.40.50.12780 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › ANL, N-terminal domain | 0.50 | 41.0 | 2.38e-01 | 100.0% | 11.7% |
ECOD (22)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3578527 | 101.1.16.1 ↗ | alpha arrays › HTH › HTH › Ribosomal protein L11, C-terminal domain › Ribosomal_L11 | 0.85 | 71.0 | 6.11e-01 | 100.0% | 71.7% |
| 4545934 | 130.1.1.29 ↗ | alpha arrays › LEM/SAP HeH motif-like › LEM/SAP HeH motif › LEM/SAP HeH motif › SLS1_N | 0.69 | 51.0 | 4.48e-01 | 100.0% | 81.4% |
| 2081535 | 2006.1.4.2 ↗ | a/b three-layered sandwiches › HAD domain-like › HAD domain-related › PIN domain-like › PIN | 0.67 | 54.0 | 3.77e-01 | 100.0% | 28.9% |
| 4940995 | 2008.1.1.0 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like | 0.63 | 48.0 | 3.67e-01 | 100.0% | 50.0% |
| 5032544 | 2006.1.4.0 ↗ | a/b three-layered sandwiches › HAD domain-like › HAD domain-related › PIN domain-like | 0.63 | 49.0 | 3.49e-01 | 100.0% | 28.9% |
| 5061987 | 2006.1.4.2 ↗ | a/b three-layered sandwiches › HAD domain-like › HAD domain-related › PIN domain-like › PIN | 0.63 | 48.0 | 3.45e-01 | 100.0% | 28.1% |
| 4997575 | 101.35.1.0 ↗ | alpha arrays › HTH › DNA repair regulatory protein RecX › DNA repair regulatory protein RecX | 0.62 | 45.0 | 4.31e-01 | 100.0% | 72.7% |
| 4354223 | 2004.1.1.192 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › AAA_18 | 0.61 | 46.0 | 2.94e-01 | 91.7% | 16.2% |
| 2806361 | 2485.3.1.0 ↗ | a+b three layers › Thioredoxin-like › Major capsid protein gp5 › Major capsid protein gp5 | 0.61 | 46.0 | 2.91e-01 | 100.0% | 15.0% |
| 4956434 | 2006.1.4.13 ↗ | a/b three-layered sandwiches › HAD domain-like › HAD domain-related › PIN domain-like › PIN_9 | 0.60 | 50.0 | 3.52e-01 | 100.0% | 28.1% |
| 3221893 | 2004.1.1.232 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › DEXQc_Suv3 | 0.60 | 49.0 | 3.13e-01 | 97.2% | 98.1% |
| 5079189 | 2006.1.4.2 ↗ | a/b three-layered sandwiches › HAD domain-like › HAD domain-related › PIN domain-like › PIN | 0.59 | 46.0 | 3.29e-01 | 100.0% | 27.3% |
| 4297700 | 2004.1.1.0 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases | 0.59 | 44.0 | 2.85e-01 | 91.7% | 16.2% |
| 3254211 | 7516.1.1.2 ↗ | a/b three-layered sandwiches › Nucleotide-diphospho-sugar transferases › Nucleotide-diphospho-sugar transferases › Nucleotide-diphospho-sugar transferases › Glycos_transf_2 | 0.58 | 47.0 | 2.73e-01 | 100.0% | 29.2% |
| 4055310 | 2004.1.1.50 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Guanylate_kin | 0.57 | 43.0 | 2.86e-01 | 97.2% | 73.9% |
| 4970230 | 2006.1.4.50 ↗ | a/b three-layered sandwiches › HAD domain-like › HAD domain-related › PIN domain-like › DUF3368 | 0.57 | 46.0 | 3.14e-01 | 100.0% | 51.5% |
| 3546840 | 2004.1.1.41 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › ADK | 0.56 | 41.0 | 2.62e-01 | 100.0% | 23.0% |
| 3931961 | 101.1.1.0 ↗ | alpha arrays › HTH › HTH › Three-helical HTH | 0.56 | 40.0 | 3.89e-01 | 100.0% | 72.0% |
| 3288380 | 2006.1.4.2 ↗ | a/b three-layered sandwiches › HAD domain-like › HAD domain-related › PIN domain-like › PIN | 0.55 | 41.0 | 3.01e-01 | 100.0% | 30.7% |
| 3218481 | 109.4.1.369 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › SNAPC1 | 0.55 | 40.0 | 2.83e-01 | 91.7% | 22.1% |
| 5058164 | 2004.1.1.176 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Beta-Casp | 0.51 | 44.0 | 2.91e-01 | 100.0% | 20.6% |
| 3701933 | 301.1.1.0 ↗ | a+b three layers › Bacillus chorismate mutase-like › L30e-like › L30e-like | 0.50 | 41.0 | 3.09e-01 | 100.0% | 86.7% |