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ERMGT119_2_scaffold_6_prodigal-single.1__X__X__00313
Bact-VirERMGT119_2_scaffold_6_prodigal-single.1__X__X__00313
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 5-169
Domain cluster:
representative
CATH (24)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 6liuC02 | 3.90.1150.10 | Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › Aspartate Aminotransferase, domain 1 | 0.64 | 38.0 | 4.41e-01 | 72.7% | 81.0% |
| 1js3A03 | 3.90.1150.10 | Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › Aspartate Aminotransferase, domain 1 | 0.64 | 37.0 | 4.59e-01 | 73.9% | 93.8% |
| 4e1oA03 | 3.90.1150.10 | Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › Aspartate Aminotransferase, domain 1 | 0.64 | 36.0 | 4.48e-01 | 73.3% | 90.8% |
| 7npaA02 | 3.30.70.3340 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.63 | 34.0 | 4.52e-01 | 90.3% | 100.0% |
| 2j0wA03 | 3.30.70.260 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › ACT domain | 0.62 | 32.0 | 4.24e-01 | 86.7% | 96.3% |
| 4iw7A01 | 3.90.1150.10 | Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › Aspartate Aminotransferase, domain 1 | 0.62 | 35.0 | 4.04e-01 | 74.5% | 76.5% |
| 2vs7A02 | 3.10.28.10 | Alpha Beta › Roll › Endonuclease I-creI › Homing endonucleases | 0.61 | 30.0 | 4.15e-01 | 92.7% | 96.2% |
| 1k3sA00 | 3.30.1460.10 | Alpha Beta › 2-Layer Sandwich › Yope Regulator; Chain: A, › | 0.60 | 35.0 | 4.16e-01 | 74.5% | 85.2% |
| 1dq3A04 | 3.10.28.10 | Alpha Beta › Roll › Endonuclease I-creI › Homing endonucleases | 0.60 | 32.0 | 3.74e-01 | 90.3% | 71.9% |
| 3c0wA02 | 3.10.28.10 | Alpha Beta › Roll › Endonuclease I-creI › Homing endonucleases | 0.59 | 32.0 | 3.84e-01 | 90.9% | 80.6% |
| 1xkpC00 | 3.30.1460.10 | Alpha Beta › 2-Layer Sandwich › Yope Regulator; Chain: A, › | 0.58 | 36.0 | 4.09e-01 | 75.2% | 81.0% |
| 1lxjA00 | 3.30.70.930 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.58 | 30.0 | 3.63e-01 | 77.6% | 76.7% |
| 1tuaA01 | 3.30.1370.10 | Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S8; Chain: A, domain 1 › K Homology domain, type 1 | 0.55 | 28.0 | 3.87e-01 | 73.3% | 96.4% |
| 3jamK00 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.55 | 27.0 | 3.39e-01 | 91.5% | 78.1% |
| 2dchX02 | 3.10.28.10 | Alpha Beta › Roll › Endonuclease I-creI › Homing endonucleases | 0.54 | 29.0 | 3.45e-01 | 72.1% | 74.8% |
| 5xyiK00 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.54 | 26.0 | 3.36e-01 | 91.5% | 81.1% |
| 2qsrA01 | 3.90.1150.50 | Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › Transcription-repair-coupling factor, D7 domain | 0.53 | 39.0 | 4.07e-01 | 77.0% | 98.1% |
| 2if1A00 | 3.30.780.10 | Alpha Beta › 2-Layer Sandwich › Translation Initiation Factor Eif1 › SUI1-like domain | 0.53 | 29.0 | 3.28e-01 | 71.5% | 67.5% |
| 6e4nA00 | 3.30.70.330 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › RRM (RNA recognition motif) domain | 0.53 | 25.0 | 3.44e-01 | 95.8% | 97.2% |
| 2wz1B00 | 3.30.70.1230 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Nucleotide cyclase, GGDEF domain | 0.53 | 38.0 | 3.65e-01 | 75.2% | 96.9% |
| 2bf3B00 | 3.90.56.10 | Alpha Beta › Alpha-Beta Complex › Phenol Hydroxylase P2 Protein › Monooxygenase component MmoB/DmpM | 0.52 | 28.0 | 3.62e-01 | 73.9% | 94.3% |
| 4hw0C00 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.52 | 25.0 | 3.20e-01 | 92.1% | 76.3% |
| 3fd0A01 | 3.90.1150.60 | Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › Methioning gamme-lyase, C-terminal domain | 0.51 | 38.0 | 3.58e-01 | 75.2% | 93.8% |
| 4h5bA00 | 3.30.1460.70 | Alpha Beta › 2-Layer Sandwich › Yope Regulator; Chain: A, › | 0.50 | 39.0 | 4.12e-01 | 83.0% | 90.8% |
ECOD (27)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4992653 | 242.1.1.0 ↗ | a+b two layers › Homing endonucleases-like › Homing endonucleases › Homing endonucleases | 0.68 | 30.0 | 4.52e-01 | 93.3% | 98.6% |
| 4217176 | 3016.1.1.0 ↗ | a+b two layers › C-terminal domain in some PLP-dependent transferases › C-terminal domain in some PLP-dependent transferases › C-terminal domain in some PLP-dependent transferases | 0.64 | 36.0 | 4.52e-01 | 73.9% | 91.0% |
| 3801312 | 3016.1.1.0 ↗ | a+b two layers › C-terminal domain in some PLP-dependent transferases › C-terminal domain in some PLP-dependent transferases › C-terminal domain in some PLP-dependent transferases | 0.64 | 36.0 | 4.66e-01 | 73.9% | 100.0% |
| 5028488 | 242.1.1.7 ↗ | a+b two layers › Homing endonucleases-like › Homing endonucleases › Homing endonucleases › LAGLIDADG_3 | 0.64 | 33.0 | 4.15e-01 | 90.3% | 80.0% |
| 4427482 | 3016.1.1.0 ↗ | a+b two layers › C-terminal domain in some PLP-dependent transferases › C-terminal domain in some PLP-dependent transferases › C-terminal domain in some PLP-dependent transferases | 0.63 | 37.0 | 4.43e-01 | 93.9% | 86.4% |
| 3500240 | 3016.1.1.0 ↗ | a+b two layers › C-terminal domain in some PLP-dependent transferases › C-terminal domain in some PLP-dependent transferases › C-terminal domain in some PLP-dependent transferases | 0.63 | 36.0 | 4.30e-01 | 74.5% | 83.6% |
| 3950413 | 242.1.1.7 ↗ | a+b two layers › Homing endonucleases-like › Homing endonucleases › Homing endonucleases › LAGLIDADG_3 | 0.63 | 33.0 | 3.91e-01 | 91.5% | 73.6% |
| 3984327 | 241.1.1.4 ↗ | a+b two layers › Type III secretory system chaperone-like › Type III secretory system chaperone › Type III secretory system chaperone › Chaperone_III | 0.60 | 35.0 | 4.07e-01 | 74.5% | 80.0% |
| 4997777 | 242.1.1.0 ↗ | a+b two layers › Homing endonucleases-like › Homing endonucleases › Homing endonucleases | 0.60 | 31.0 | 4.13e-01 | 87.9% | 94.1% |
| 6630 | 241.1.1.4 ↗ | a+b two layers › Type III secretory system chaperone-like › Type III secretory system chaperone › Type III secretory system chaperone › Chaperone_III | 0.60 | 35.0 | 4.14e-01 | 74.5% | 84.4% |
| 4937054 | 242.1.1.0 ↗ | a+b two layers › Homing endonucleases-like › Homing endonucleases › Homing endonucleases | 0.60 | 32.0 | 3.91e-01 | 87.3% | 79.0% |
| 3951221 | 242.1.1.0 ↗ | a+b two layers › Homing endonucleases-like › Homing endonucleases › Homing endonucleases | 0.60 | 30.0 | 4.01e-01 | 87.3% | 91.8% |
| 5029252 | 242.1.1.7 ↗ | a+b two layers › Homing endonucleases-like › Homing endonucleases › Homing endonucleases › LAGLIDADG_3 | 0.60 | 33.0 | 3.72e-01 | 92.1% | 70.0% |
| 4566109 | 242.1.1.0 ↗ | a+b two layers › Homing endonucleases-like › Homing endonucleases › Homing endonucleases | 0.59 | 33.0 | 4.18e-01 | 89.7% | 94.7% |
| 3593859 | 306.3.1.0 ↗ | a+b two layers › Glucose permease domain IIB-like › eIF1-like › eIF1-like | 0.58 | 31.0 | 3.76e-01 | 70.3% | 79.0% |
| 4999898 | 242.1.1.0 ↗ | a+b two layers › Homing endonucleases-like › Homing endonucleases › Homing endonucleases | 0.58 | 32.0 | 4.13e-01 | 87.3% | 96.7% |
| 5046394 | 242.1.1.7 ↗ | a+b two layers › Homing endonucleases-like › Homing endonucleases › Homing endonucleases › LAGLIDADG_3 | 0.56 | 30.0 | 3.87e-01 | 87.3% | 92.2% |
| 5065095 | 242.1.1.0 ↗ | a+b two layers › Homing endonucleases-like › Homing endonucleases › Homing endonucleases | 0.56 | 32.0 | 3.88e-01 | 91.5% | 85.5% |
| 1159602 | 242.1.1.7 ↗ | a+b two layers › Homing endonucleases-like › Homing endonucleases › Homing endonucleases › LAGLIDADG_3 | 0.55 | 29.0 | 3.46e-01 | 72.7% | 72.3% |
| 3950275 | 242.1.1.0 ↗ | a+b two layers › Homing endonucleases-like › Homing endonucleases › Homing endonucleases | 0.55 | 30.0 | 3.93e-01 | 87.9% | 100.0% |
| 4200948 | 242.1.1.2 ↗ | a+b two layers › Homing endonucleases-like › Homing endonucleases › Homing endonucleases › LAGLIDADG_2 | 0.55 | 30.0 | 3.65e-01 | 89.1% | 85.0% |
| 3232266 | 304.9.1.84 ↗ | a+b two layers › Alpha-beta plaits › RNA-binding domain, RBD › RNA-binding domain, RBD › PF28975 | 0.54 | 30.0 | 3.66e-01 | 84.2% | 82.9% |
| 5008353 | 241.1.1.0 ↗ | a+b two layers › Type III secretory system chaperone-like › Type III secretory system chaperone › Type III secretory system chaperone | 0.52 | 33.0 | 3.76e-01 | 74.5% | 86.7% |
| 4653164 | 242.1.1.1 ↗ | a+b two layers › Homing endonucleases-like › Homing endonucleases › Homing endonucleases › LAGLIDADG_1 | 0.52 | 32.0 | 3.47e-01 | 87.9% | 72.6% |
| 4993809 | 242.1.1.7 ↗ | a+b two layers › Homing endonucleases-like › Homing endonucleases › Homing endonucleases › LAGLIDADG_3 | 0.52 | 29.0 | 3.66e-01 | 95.8% | 91.0% |
| 3475155 | 304.9.1.84 ↗ | a+b two layers › Alpha-beta plaits › RNA-binding domain, RBD › RNA-binding domain, RBD › PF28975 | 0.51 | 29.0 | 3.61e-01 | 84.2% | 93.7% |
| 222386 | 241.1.1.6 ↗ | a+b two layers › Type III secretory system chaperone-like › Type III secretory system chaperone › Type III secretory system chaperone › YbjN | 0.50 | 39.0 | 4.12e-01 | 83.0% | 90.8% |