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ERMGT119_2_scaffold_6_prodigal-single.1__X__X__00327

Bact-Vir

ERMGT119_2_scaffold_6_prodigal-single.1__X__X__00327

Identity

Kingdom:
phage

Quality

86.4 mean pLDDT

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 9-74
PDB
Domain cluster: representative
CATH (47)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3feoB02 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.77 55.0 5.12e-01 100.0% 60.2%
4c5eC02 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.76 54.0 4.74e-01 100.0% 51.0%
1b7tA02 2.30.30.360 Mainly Beta › Roll › SH3 type barrels. › Myosin S1 fragment, N-terminal 0.72 47.0 5.16e-01 100.0% 86.5%
3h8zA02 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.71 47.0 4.79e-01 100.0% 70.3%
4ii1A02 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.69 46.0 4.91e-01 100.0% 82.1%
5i4eA01 2.30.30.360 Mainly Beta › Roll › SH3 type barrels. › Myosin S1 fragment, N-terminal 0.69 43.0 4.89e-01 78.8% 91.3%
2vb6A01 2.30.30.360 Mainly Beta › Roll › SH3 type barrels. › Myosin S1 fragment, N-terminal 0.68 47.0 5.04e-01 100.0% 87.0%
3goxA01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.68 47.0 5.18e-01 100.0% 94.1%
2as9B01 2.40.10.10 Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases 0.68 50.0 4.29e-01 77.3% 66.3%
3fb9B00 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.67 53.0 4.92e-01 100.0% 67.9%
2mysA01 2.30.30.360 Mainly Beta › Roll › SH3 type barrels. › Myosin S1 fragment, N-terminal 0.67 44.0 4.95e-01 100.0% 91.7%
1wczA01 2.40.10.10 Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases 0.67 49.0 4.03e-01 77.3% 63.5%
3e1sA04 2.30.30.940 Mainly Beta › Roll › SH3 type barrels. › 0.67 48.0 4.79e-01 100.0% 73.9%
2xzlA02 2.40.30.230 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › 0.66 49.0 4.63e-01 100.0% 65.8%
3p02A02 2.40.128.440 Mainly Beta › Beta Barrel › Lipocalin › Uncharacterised protein PF14274, DUF4361 0.65 55.0 4.29e-01 100.0% 85.7%
7afrX02 2.30.30.180 Mainly Beta › Roll › SH3 type barrels. › Ribosome maturation factor RimP, C-terminal domain 0.63 44.0 4.56e-01 100.0% 81.7%
3a2yA00 3.90.1720.10 Alpha Beta › Alpha-Beta Complex › endopeptidase fold (from Nostoc punctiforme) › endopeptidase domain like (from Nostoc punctiforme) 0.63 55.0 4.02e-01 100.0% 38.9%
4m4zA01 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.63 42.0 4.75e-01 97.0% 100.0%
2qmiA02 2.40.128.210 Mainly Beta › Beta Barrel › Lipocalin › Pab87 octamerisation domain 0.62 51.0 4.49e-01 95.5% 61.0%
2aj2A01 3.40.1740.10 Alpha Beta › 3-Layer(aba) Sandwich › VC0467-like › VC0467-like 0.62 46.0 4.06e-01 100.0% 54.6%
5zwzA01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.62 47.0 4.70e-01 98.5% 80.0%
7u32F02 2.30.30.10 Mainly Beta › Roll › SH3 type barrels. › Integrase, C-terminal domain superfamily, retroviral 0.61 43.0 4.64e-01 100.0% 98.0%
3e8lC00 2.80.10.50 Mainly Beta › Trefoil › Trefoil (Acidic Fibroblast Growth Factor, subunit A) › 0.59 50.0 3.80e-01 100.0% 92.6%
4huzA02 3.10.180.10 Alpha Beta › Roll › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase; domain 1 › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase, domain 1 0.59 40.0 3.10e-01 89.4% 31.1%
1ib8A02 2.30.30.180 Mainly Beta › Roll › SH3 type barrels. › Ribosome maturation factor RimP, C-terminal domain 0.59 43.0 4.34e-01 100.0% 79.1%
1lckA01 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.59 45.0 4.72e-01 100.0% 93.2%
4f88102 3.90.1720.60 Alpha Beta › Alpha-Beta Complex › endopeptidase fold (from Nostoc punctiforme) › 0.59 47.0 3.35e-01 100.0% 28.2%
1ei5A02 2.40.128.50 Mainly Beta › Beta Barrel › Lipocalin › 0.58 44.0 4.16e-01 100.0% 67.1%
3jcuO01 2.40.160.30 Mainly Beta › Beta Barrel › Porin › Photosystem II, cytochrome c-550 precursor 0.58 49.0 3.71e-01 100.0% 86.4%
6i18A04 2.80.10.50 Mainly Beta › Trefoil › Trefoil (Acidic Fibroblast Growth Factor, subunit A) › 0.57 46.0 4.03e-01 93.9% 100.0%
3nqkA02 2.40.128.440 Mainly Beta › Beta Barrel › Lipocalin › Uncharacterised protein PF14274, DUF4361 0.57 47.0 3.74e-01 100.0% 86.3%
1wi1A01 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.56 48.0 4.13e-01 100.0% 79.3%
6gbuD00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.56 45.0 4.58e-01 100.0% 92.2%
2l1tA00 2.30.110.70 Mainly Beta › Roll › Pnp Oxidase; Chain A › 0.56 50.0 4.23e-01 100.0% 80.7%
2vf9A00 3.30.380.10 Alpha Beta › 2-Layer Sandwich › MS2 Viral Coat Protein › MS2 Viral Coat Protein 0.56 43.0 3.62e-01 90.9% 66.4%
1dwnA00 3.30.380.10 Alpha Beta › 2-Layer Sandwich › MS2 Viral Coat Protein › MS2 Viral Coat Protein 0.56 46.0 3.76e-01 92.4% 66.9%
6yfiB01 3.30.380.10 Alpha Beta › 2-Layer Sandwich › MS2 Viral Coat Protein › MS2 Viral Coat Protein 0.55 44.0 3.56e-01 89.4% 56.3%
2imlA01 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.55 39.0 3.43e-01 78.8% 84.1%
4z48A00 2.50.20.10 Mainly Beta › Clam › outer membrane lipoprotein receptor (LolB), chain A › Lipoprotein localisation LolA/LolB/LppX 0.55 44.0 3.11e-01 92.4% 83.3%
3s27B01 3.10.450.330 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.54 39.0 3.19e-01 78.8% 69.9%
1sgoA01 3.30.2280.10 Alpha Beta › 2-Layer Sandwich › copper amine oxidase-like fold › Hypothetical protein (hspc210) 0.53 40.0 3.50e-01 95.5% 51.9%
6r3wA00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.53 43.0 3.39e-01 97.0% 95.7%
5tgnA00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.53 42.0 3.66e-01 90.9% 91.7%
2hbpA00 2.30.30.700 Mainly Beta › Roll › SH3 type barrels. › SLA1 homology domain 1 0.52 37.0 3.75e-01 100.0% 77.3%
5ighA01 3.30.200.20 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 0.52 42.0 3.94e-01 97.0% 94.3%
1aq3A00 3.30.380.10 Alpha Beta › 2-Layer Sandwich › MS2 Viral Coat Protein › MS2 Viral Coat Protein 0.51 41.0 3.40e-01 92.4% 64.3%
3u0aA00 2.40.160.210 Mainly Beta › Beta Barrel › Porin › Acyl-CoA thioesterase, double hotdog domain 0.51 38.0 2.74e-01 87.9% 74.2%
ECOD (78)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3996279 4.1.1.34 beta barrels › SH3 › SH3 › SH3 › MBT 0.82 60.0 5.60e-01 100.0% 63.7%
3893808 4.1.1.34 beta barrels › SH3 › SH3 › SH3 › MBT 0.78 58.0 3.66e-01 100.0% 16.2%
3774803 4.1.1.34 beta barrels › SH3 › SH3 › SH3 › MBT 0.77 57.0 3.54e-01 100.0% 14.6%
3553983 4.1.1.233 beta barrels › SH3 › SH3 › SH3 › Myosin_VII_N 0.76 56.0 5.83e-01 100.0% 85.0%
3890336 4.1.1.34 beta barrels › SH3 › SH3 › SH3 › MBT 0.76 57.0 3.68e-01 100.0% 18.9%
3520308 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.73 58.0 5.16e-01 100.0% 60.0%
None 0.70 51.0 3.56e-01 77.3% 37.1%
3928136 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.70 52.0 5.40e-01 100.0% 86.7%
4387060 1.1.17.1 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 2 › Trypsin 0.70 51.0 3.53e-01 77.3% 36.3%
1503651 4.1.1.42 beta barrels › SH3 › SH3 › SH3 › Agenet 0.70 51.0 4.86e-01 100.0% 65.0%
3625264 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.70 48.0 4.29e-01 100.0% 50.5%
3270324 4.1.1.33 beta barrels › SH3 › SH3 › SH3 › Myosin_N 0.69 47.0 5.26e-01 100.0% 94.0%
3368864 4.1.1.42 beta barrels › SH3 › SH3 › SH3 › Agenet 0.69 52.0 5.26e-01 100.0% 83.1%
3217772 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.68 46.0 4.29e-01 100.0% 55.3%
1096110 1.1.17.3 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 2 › Trypsin_2 0.68 50.0 3.42e-01 77.3% 33.8%
4247805 1.1.5.1 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Trypsin 0.68 50.0 3.44e-01 77.3% 37.0%
None 0.68 50.0 3.41e-01 77.3% 33.6%
None 0.68 50.0 3.42e-01 77.3% 34.3%
3795384 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.68 50.0 3.48e-01 100.0% 24.2%
3841414 4.1.1.42 beta barrels › SH3 › SH3 › SH3 › Agenet 0.67 49.0 4.90e-01 100.0% 74.3%
3260972 220.1.1.0 beta barrels › PH domain-like › PH domain-like › PH domain-like 0.67 58.0 4.83e-01 100.0% 74.2%
None 0.67 49.0 3.36e-01 77.3% 34.0%
3237314 708.1.1.4 beta complex topology › ETN0001 domain-like › ETN0001 domain-like › NAC/WRKY/GCM/WOPR domain › FLYWCH 0.67 62.0 5.51e-01 100.0% 87.8%
None 0.66 43.0 2.60e-01 86.4% 9.6%
4355011 506.2.1.0 beta meanders › Colicin E3 ribonuclease domain-like › UvrB interaction domain › UvrB interaction domain 0.66 43.0 2.46e-01 86.4% 6.6%
3587906 4.1.1.46 beta barrels › SH3 › SH3 › SH3 › VEG 0.66 51.0 4.89e-01 100.0% 72.5%
None 0.66 43.0 2.48e-01 86.4% 7.2%
4524863 506.2.1.2 beta meanders › Colicin E3 ribonuclease domain-like › UvrB interaction domain › UvrB interaction domain › UvrB_inter 0.65 43.0 3.80e-01 86.4% 46.3%
4228771 506.2.1.0 beta meanders › Colicin E3 ribonuclease domain-like › UvrB interaction domain › UvrB interaction domain 0.65 42.0 3.22e-01 86.4% 27.5%
3377696 1.1.17.0 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 2 0.65 48.0 3.41e-01 78.8% 35.5%
3402950 4.1.1.34 beta barrels › SH3 › SH3 › SH3 › MBT 0.64 56.0 3.33e-01 100.0% 14.0%
None 0.64 42.0 2.52e-01 86.4% 9.7%
3459099 4.1.1.158 beta barrels › SH3 › SH3 › SH3 › DUF3444 0.64 56.0 4.85e-01 100.0% 64.8%
3447771 1.1.17.0 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 2 0.63 48.0 3.24e-01 80.3% 39.6%
3310575 4.1.1.158 beta barrels › SH3 › SH3 › SH3 › DUF3444 0.63 56.0 4.82e-01 100.0% 72.4%
3703933 4.1.1.237 beta barrels › SH3 › SH3 › SH3 › KOW4_SPT5 0.63 47.0 4.79e-01 100.0% 81.5%
3514556 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.63 45.0 4.49e-01 100.0% 72.9%
3619619 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.62 45.0 4.45e-01 100.0% 72.9%
4937587 219.1.1.0 a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases 0.62 50.0 3.76e-01 100.0% 35.8%
4993192 243.3.1.0 a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin 0.62 48.0 4.85e-01 86.4% 86.2%
3507003 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.61 54.0 5.19e-01 100.0% 86.7%
3592075 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.61 52.0 4.86e-01 100.0% 75.3%
3576940 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.61 52.0 3.56e-01 100.0% 28.0%
3342814 4.1.1.42 beta barrels › SH3 › SH3 › SH3 › Agenet 0.61 54.0 4.79e-01 100.0% 75.8%
3357709 4.1.1.42 beta barrels › SH3 › SH3 › SH3 › Agenet 0.60 52.0 4.78e-01 100.0% 74.1%
3286461 9.4.1.0 beta barrels › Lipocalins/Streptavidin › D-aminopeptidase, middle and C-terminal domains › D-aminopeptidase, middle and C-terminal domains 0.60 50.0 4.50e-01 95.5% 68.4%
4466506 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.60 47.0 4.55e-01 100.0% 77.3%
3834112 4.1.1.42 beta barrels › SH3 › SH3 › SH3 › Agenet 0.59 52.0 4.92e-01 100.0% 90.0%
490 4.1.1.97 beta barrels › SH3 › SH3 › SH3 › DUF150_C 0.59 43.0 4.21e-01 100.0% 71.6%
3342793 4.1.1.42 beta barrels › SH3 › SH3 › SH3 › Agenet 0.59 50.0 3.61e-01 100.0% 33.2%
3709279 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.59 47.0 4.32e-01 100.0% 66.7%
3363448 4.1.1.140 beta barrels › SH3 › SH3 › SH3 › Pif1_2B_dom 0.59 47.0 4.38e-01 100.0% 69.4%
4283343 4.1.1.97 beta barrels › SH3 › SH3 › SH3 › DUF150_C 0.59 47.0 4.51e-01 100.0% 76.2%
3356605 4.1.1.42 beta barrels › SH3 › SH3 › SH3 › Agenet 0.58 51.0 4.64e-01 100.0% 78.9%
4069560 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.58 47.0 4.58e-01 100.0% 80.0%
3595169 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.58 47.0 4.64e-01 100.0% 85.7%
3494683 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.58 43.0 4.30e-01 100.0% 77.1%
3930014 4.1.1.140 beta barrels › SH3 › SH3 › SH3 › Pif1_2B_dom 0.57 42.0 3.21e-01 80.3% 32.5%
3645395 4.1.1.42 beta barrels › SH3 › SH3 › SH3 › Agenet 0.57 50.0 4.75e-01 100.0% 88.7%
3599019 9.1.1.0 beta barrels › Lipocalins/Streptavidin › Lipocalins › Lipocalins 0.57 48.0 4.16e-01 100.0% 92.2%
3719783 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.57 49.0 4.46e-01 100.0% 75.5%
5063188 1.1.5.33 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Trypsin_2 0.57 52.0 3.56e-01 100.0% 53.0%
5039793 219.1.1.77 a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › DUF3335 0.56 48.0 3.43e-01 100.0% 31.2%
140315 1.1.5.40 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › PilZN1 0.56 50.0 4.23e-01 100.0% 80.7%
3462999 708.1.1.7 beta complex topology › ETN0001 domain-like › ETN0001 domain-like › NAC/WRKY/GCM/WOPR domain › DBD_Tnp_Mut 0.56 42.0 4.20e-01 90.9% 78.6%
4251101 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.55 44.0 4.12e-01 100.0% 70.6%
3268160 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.55 47.0 4.31e-01 100.0% 75.6%
3827179 708.1.1.7 beta complex topology › ETN0001 domain-like › ETN0001 domain-like › NAC/WRKY/GCM/WOPR domain › DBD_Tnp_Mut 0.54 41.0 4.06e-01 90.9% 77.1%
3668420 4.1.1.140 beta barrels › SH3 › SH3 › SH3 › Pif1_2B_dom 0.54 47.0 3.43e-01 100.0% 38.4%
3357239 4.1.1.140 beta barrels › SH3 › SH3 › SH3 › Pif1_2B_dom 0.54 47.0 3.60e-01 100.0% 45.6%
3669214 4.1.1.140 beta barrels › SH3 › SH3 › SH3 › Pif1_2B_dom 0.53 47.0 3.80e-01 100.0% 56.2%
None 0.53 47.0 2.91e-01 100.0% 18.0%
3816455 4.1.1.140 beta barrels › SH3 › SH3 › SH3 › Pif1_2B_dom 0.53 46.0 3.81e-01 100.0% 57.6%
3300226 4.1.1.140 beta barrels › SH3 › SH3 › SH3 › Pif1_2B_dom 0.53 46.0 4.36e-01 100.0% 90.0%
3425872 4.1.1.140 beta barrels › SH3 › SH3 › SH3 › Pif1_2B_dom 0.52 45.0 4.12e-01 100.0% 80.0%
3257607 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.52 41.0 3.98e-01 100.0% 80.0%
3302391 4.1.1.140 beta barrels › SH3 › SH3 › SH3 › Pif1_2B_dom 0.51 44.0 3.56e-01 100.0% 51.4%
3332609 4.1.1.140 beta barrels › SH3 › SH3 › SH3 › Pif1_2B_dom 0.51 44.0 3.58e-01 97.0% 55.2%
D2 medium residues 77-117
PDB
Domain cluster: representative