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ERMGT119_2_scaffold_6_prodigal-single.1__X__X__00339

Bact-Vir

ERMGT119_2_scaffold_6_prodigal-single.1__X__X__00339

Identity

Kingdom:
phage

Quality

86.2 mean pLDDT

Cluster

View cluster (2 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 15-75
PDB
Domain cluster: rep: NC_018087.3__YP_006488905.1__ZZ1p0071__00071__D17-72
CATH (18)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2gc9B00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.66 56.0 4.23e-01 100.0% 78.9%
1ysqA00 3.30.450.40 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › GAF domain 0.64 55.0 3.99e-01 98.4% 70.7%
3fqmA01 2.20.25.210 Mainly Beta › Single Sheet › N-terminal domain of TfIIb › Hepatitis C NS5A, domain 1B 0.62 44.0 4.43e-01 100.0% 75.4%
1a1rA02 2.40.10.10 Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases 0.62 47.0 4.25e-01 83.6% 88.2%
2dluA00 2.30.42.10 Mainly Beta › Roll › Pdz3 Domain › PDZ domain 0.61 47.0 3.97e-01 86.9% 63.1%
4f7uF00 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.57 47.0 4.50e-01 100.0% 79.5%
3fb9B00 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.56 45.0 4.19e-01 100.0% 70.2%
3oblA00 2.40.128.450 Mainly Beta › Beta Barrel › Lipocalin › 0.56 46.0 3.67e-01 95.1% 51.5%
3h6qA00 2.80.10.50 Mainly Beta › Trefoil › Trefoil (Acidic Fibroblast Growth Factor, subunit A) › 0.56 46.0 3.52e-01 100.0% 97.0%
4bh5A00 2.70.70.10 Mainly Beta › Distorted Sandwich › Glucose Permease (Domain IIA) › Glucose Permease (Domain IIA) 0.55 37.0 3.00e-01 70.5% 53.8%
4b6eB01 2.40.10.120 Mainly Beta › Beta Barrel › Thrombin, subunit H › 0.55 46.0 3.25e-01 95.1% 50.0%
6j5cA02 3.30.67.10 Alpha Beta › 2-Layer Sandwich › Viral Envelope Glycoprotein; domain 2 › Viral Envelope Glycoprotein, domain 2 0.54 45.0 4.17e-01 100.0% 72.3%
6oqrA01 2.40.30.20 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › 0.53 36.0 3.25e-01 100.0% 48.9%
2wssA01 2.40.30.20 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › 0.52 35.0 3.14e-01 100.0% 47.3%
2o5nA02 3.30.500.30 Alpha Beta › 2-Layer Sandwich › Murine Class I Major Histocompatibility Complex, H2-DB; Chain A, domain 1 › 0.51 46.0 3.40e-01 100.0% 48.4%
1mbmA01 2.40.10.10 Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases 0.51 36.0 3.45e-01 77.0% 88.2%
1wdiA02 2.40.10.240 Mainly Beta › Beta Barrel › Thrombin, subunit H › QueA-like 0.51 45.0 4.27e-01 100.0% 98.6%
3h7tA02 2.40.10.10 Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases 0.50 43.0 3.60e-01 100.0% 80.2%
ECOD (8)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4643894 9.1.1.8 ↗ beta barrels › Lipocalins/Streptavidin › Lipocalins › Lipocalins › PA_decarbox 0.65 55.0 4.19e-01 100.0% 79.4%
3220742 633.23.1.0 ↗ alpha bundles › Bromodomain-like › Claudin › Claudin 0.57 50.0 3.67e-01 100.0% 70.9%
5013892 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.55 40.0 4.14e-01 100.0% 90.9%
4995678 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.54 41.0 4.25e-01 100.0% 98.2%
4120506 243.11.1.4 ↗ a+b two layers › Cystatin-like › NP_346341.1 protein › NP_346341.1 protein › PF29632 0.54 41.0 3.82e-01 100.0% 66.3%
5078228 325.1.6.2 ↗ a+b complex topology › alpha/beta-Hammerhead/Barrel-sandwich hybrid › alpha/beta-Hammerhead/Barrel-sandwich hybrid › Duplicated hybrid motif › Peptidase_M23 0.53 42.0 3.24e-01 93.4% 94.4%
4880414 1.1.7.17 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › ATP-synt_ab_N 0.52 36.0 3.50e-01 100.0% 65.2%
4127839 325.1.7.0 ↗ a+b complex topology › alpha/beta-Hammerhead/Barrel-sandwich hybrid › alpha/beta-Hammerhead/Barrel-sandwich hybrid › Single hybrid motif 0.51 31.0 2.96e-01 96.7% 49.3%