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ERMGT119_2_scaffold_6_prodigal-single.1__X__X__00341

Bact-Vir

ERMGT119_2_scaffold_6_prodigal-single.1__X__X__00341

Identity

Kingdom:
phage

Quality

74.9 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 19-72
PDB
Domain cluster: representative
CATH (51)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3jtzA00 3.30.160.390 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Integrase, DNA-binding domain 0.80 55.0 4.89e-01 75.9% 50.6%
4fr9A00 3.10.450.360 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.75 66.0 4.84e-01 100.0% 37.6%
4hbrA00 3.10.450.360 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.74 64.0 4.75e-01 100.0% 37.9%
2gu3A01 3.10.450.40 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.73 63.0 6.03e-01 100.0% 90.8%
8siuA01 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.73 64.0 3.85e-01 100.0% 22.6%
6zxfz01 1.10.510.10 Mainly Alpha › Orthogonal Bundle › Transferase(Phosphotransferase); domain 1 › Transferase(Phosphotransferase) domain 1 0.72 61.0 4.74e-01 98.1% 93.5%
8hpoK01 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.72 63.0 3.73e-01 100.0% 26.1%
1ml8A01 2.20.25.10 Mainly Beta › Single Sheet › N-terminal domain of TfIIb › 0.71 43.0 5.17e-01 70.4% 97.1%
3k7cA00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.71 60.0 4.82e-01 96.3% 100.0%
6u5uG07 3.30.1120.100 Alpha Beta › 2-Layer Sandwich › Arylsulfatase, C-terminal domain › 0.71 49.0 3.69e-01 74.1% 37.1%
1zuoB00 3.10.110.10 Alpha Beta › Roll › Ubiquitin Conjugating Enzyme › Ubiquitin Conjugating Enzyme 0.70 62.0 4.58e-01 100.0% 58.6%
5ih0A01 3.30.200.20 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 0.70 60.0 5.01e-01 96.3% 97.8%
4q66D01 6.20.120.50 Special › Other non-globular › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.68 40.0 3.61e-01 72.2% 42.5%
3jamg01 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.68 57.0 3.52e-01 96.3% 16.5%
3dueA00 3.40.1420.30 Alpha Beta › 3-Layer(aba) Sandwich › Inhibitor of vertebrate lysozyme, Ivy › 0.68 55.0 4.24e-01 100.0% 39.4%
4i79A00 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.67 59.0 3.64e-01 100.0% 26.6%
5xyig01 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.67 54.0 3.43e-01 96.3% 16.7%
6u5vB07 3.30.1120.100 Alpha Beta › 2-Layer Sandwich › Arylsulfatase, C-terminal domain › 0.67 55.0 4.31e-01 98.1% 81.4%
2pt7C01 3.30.450.90 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › 0.67 50.0 4.06e-01 81.5% 41.5%
1ygyB03 3.30.1330.90 Alpha Beta › 2-Layer Sandwich › 60s Ribosomal Protein L30; Chain: A; › D-3-phosphoglycerate dehydrogenase; domain 3 0.66 55.0 4.22e-01 100.0% 87.1%
2i0rA01 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.66 56.0 3.46e-01 100.0% 20.6%
5ighA01 3.30.200.20 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 0.65 54.0 4.71e-01 96.3% 97.7%
5ic7A00 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.64 54.0 3.37e-01 98.1% 15.9%
3zqsA01 3.10.110.10 Alpha Beta › Roll › Ubiquitin Conjugating Enzyme › Ubiquitin Conjugating Enzyme 0.63 53.0 4.66e-01 100.0% 64.8%
3c6kA01 3.30.160.110 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Sirohaem synthase, central domain 0.63 53.0 4.56e-01 100.0% 57.4%
4rs6A01 3.30.1120.30 Alpha Beta › 2-Layer Sandwich › Arylsulfatase, C-terminal domain › POLO box domain 0.61 47.0 3.66e-01 83.3% 53.4%
4c5wA01 3.30.2020.30 Alpha Beta › 2-Layer Sandwich › NE0471 N-terminal domain-like › 0.61 50.0 4.17e-01 92.6% 93.8%
2jmbA00 2.40.128.290 Mainly Beta › Beta Barrel › Lipocalin › Uncharacterised protein family Atu4866 0.61 49.0 4.40e-01 92.6% 86.1%
2ymsC00 2.40.10.480 Mainly Beta › Beta Barrel › Thrombin, subunit H › 0.61 53.0 4.80e-01 100.0% 82.7%
4hs5A00 3.30.920.10 Alpha Beta › 2-Layer Sandwich › Metal Transport, Frataxin; Chain A › Frataxin/CyaY 0.61 52.0 4.26e-01 100.0% 81.9%
3havA01 3.30.200.20 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 0.60 52.0 4.47e-01 100.0% 94.4%
1quqB00 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.60 45.0 3.59e-01 83.3% 47.4%
1j71A02 2.40.70.10 Mainly Beta › Beta Barrel › Cathepsin D, subunit A; domain 1 › Acid Proteases 0.60 43.0 3.17e-01 79.6% 78.3%
1r8nA00 2.80.10.50 Mainly Beta › Trefoil › Trefoil (Acidic Fibroblast Growth Factor, subunit A) › 0.60 49.0 3.53e-01 100.0% 77.8%
5v6fA00 2.100.10.30 Mainly Beta › Aligned Prism › Vitelline Membrane Outer Layer Protein I, subunit A › Jacalin-like lectin domain 0.58 44.0 3.35e-01 83.3% 89.8%
1wv4B00 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.58 45.0 3.35e-01 88.9% 89.6%
2ogqA01 3.30.1120.30 Alpha Beta › 2-Layer Sandwich › Arylsulfatase, C-terminal domain › POLO box domain 0.57 47.0 3.66e-01 94.4% 76.2%
3u97A00 3.10.450.530 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › Ribonuclease toxin, BrnT, of type II toxin-antitoxin system 0.56 47.0 4.24e-01 96.3% 94.8%
1xezA04 2.100.10.30 Mainly Beta › Aligned Prism › Vitelline Membrane Outer Layer Protein I, subunit A › Jacalin-like lectin domain 0.56 42.0 3.20e-01 83.3% 84.4%
2dgyA01 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.55 42.0 3.77e-01 83.3% 78.5%
4dapA01 2.40.50.580 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.55 40.0 3.57e-01 79.6% 75.0%
2zylA01 2.102.10.10 Mainly Beta › 3-layer Sandwich › Rieske Iron-sulfur Protein › Rieske [2Fe-2S] iron-sulphur domain 0.54 44.0 3.43e-01 96.3% 78.5%
2hsiB02 2.70.70.10 Mainly Beta › Distorted Sandwich › Glucose Permease (Domain IIA) › Glucose Permease (Domain IIA) 0.54 43.0 3.33e-01 96.3% 52.1%
3tufB00 2.70.70.10 Mainly Beta › Distorted Sandwich › Glucose Permease (Domain IIA) › Glucose Permease (Domain IIA) 0.54 43.0 3.26e-01 96.3% 52.5%
4jpdA00 3.30.920.10 Alpha Beta › 2-Layer Sandwich › Metal Transport, Frataxin; Chain A › Frataxin/CyaY 0.54 44.0 3.69e-01 100.0% 78.9%
2ct4A00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.54 42.0 3.91e-01 87.0% 77.1%
1kfiA04 3.30.310.50 Alpha Beta › 2-Layer Sandwich › TATA-Binding Protein › Alpha-D-phosphohexomutase, C-terminal domain 0.54 42.0 3.40e-01 96.3% 58.4%
4z32C02 3.30.505.10 Alpha Beta › 2-Layer Sandwich › SHC Adaptor Protein › SH2 domain 0.53 43.0 3.61e-01 92.6% 64.6%
5j3tA00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.53 40.0 3.20e-01 88.9% 61.1%
2wfwB02 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.52 41.0 3.85e-01 87.0% 86.6%
7q04F01 2.102.10.10 Mainly Beta › 3-layer Sandwich › Rieske Iron-sulfur Protein › Rieske [2Fe-2S] iron-sulphur domain 0.51 40.0 3.36e-01 100.0% 47.7%
ECOD (48)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3931922 5.1.4.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.88 63.0 3.69e-01 75.9% 11.7%
3741807 64.1.1.1 beta meanders › WW domain-like › WW domain › WW domain › WW 0.81 53.0 5.68e-01 79.6% 80.0%
136649 252.2.1.5 a+b two layers › DNA-binding domain › GCC-box binding domain-like › GCC-box binding domain-like › Arm-DNA-bind_3 0.81 57.0 4.67e-01 75.9% 42.1%
3984933 252.2.1.5 a+b two layers › DNA-binding domain › GCC-box binding domain-like › GCC-box binding domain-like › Arm-DNA-bind_3 0.78 54.0 4.52e-01 75.9% 43.3%
4527351 5.1.4.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.74 65.0 3.84e-01 100.0% 20.5%
4203232 5.1.4.36 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › MMS1_N 0.73 65.0 3.80e-01 100.0% 21.1%
3988706 243.3.1.13 a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin › DUF5590 0.73 63.0 5.85e-01 100.0% 82.9%
3992359 331.4.1.0 a+b two layers › TBP-like › Kinase associated domain 1, KA1 › Kinase associated domain 1, KA1 0.71 61.0 5.05e-01 100.0% 58.0%
3508327 5.1.4.265 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40, Beta-prop_WDR3_1st 0.70 61.0 3.68e-01 100.0% 30.8%
4031999 243.3.1.0 a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin 0.69 59.0 5.16e-01 100.0% 65.9%
4335815 292.2.1.14 a+b two layers › RIP/Polo-box domain › Polo-box domain › Polo-box domain › SWIM 0.69 52.0 4.69e-01 83.3% 69.3%
3744900 5.1.4.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.68 59.0 3.71e-01 100.0% 24.0%
3658278 5.1.3.142 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › Beta-prop_AT5G49610-like 0.68 59.0 3.64e-01 100.0% 24.8%
5644 809.2.1.1 a+b two layers › BLIP-like › BT0923-like › BT0923-like › PepSY_like 0.68 55.0 5.50e-01 100.0% 89.3%
3386275 809.2.1.1 a+b two layers › BLIP-like › BT0923-like › BT0923-like › PepSY_like 0.67 54.0 5.25e-01 100.0% 81.7%
68497 809.2.1.1 a+b two layers › BLIP-like › BT0923-like › BT0923-like › PepSY_like 0.67 53.0 5.31e-01 98.1% 87.5%
3742766 5.1.4.1 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40 0.66 58.0 3.56e-01 100.0% 25.5%
5073123 2008.5.1.1 a/b three-layered sandwiches › Restriction endonuclease-like › Uncharacterized protein AF_2093 C-terminal domain › Uncharacterized protein AF_2093 C-terminal domain › DUF6834_C 0.65 55.0 4.16e-01 98.1% 78.6%
4621655 5.1.4.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.65 56.0 3.41e-01 100.0% 21.7%
5040938 300.1.1.6 a+b three layers › Phospholipase D/nuclease › Phospholipase D/nuclease › Phospholipase D/nuclease › Regulator_TrmB 0.63 50.0 3.57e-01 88.9% 66.5%
4943316 2004.1.1.0 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases 0.63 55.0 3.71e-01 100.0% 90.0%
4079885 274.1.1.25 a+b two layers › Pili subunits › Pili subunits › Pili subunits › ComGF 0.63 48.0 4.05e-01 88.9% 48.4%
3386276 809.2.1.1 a+b two layers › BLIP-like › BT0923-like › BT0923-like › PepSY_like 0.62 49.0 4.91e-01 100.0% 89.1%
4987228 331.3.1.0 a+b two layers › TBP-like › Bet v1-like › Bet v1-like 0.62 50.0 3.71e-01 98.1% 38.5%
5049624 216.1.1.0 a+b two layers › UBC-like › UBC-like › UBC-like 0.62 49.0 4.21e-01 100.0% 52.6%
3968197 243.4.1.1 a+b two layers › Cystatin-like › DsbC/DsbG N-terminal domain-like › DsbC/DsbG N-terminal domain-like › DsbC_N 0.62 50.0 5.03e-01 98.1% 92.7%
3505083 5.1.5.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed 0.61 53.0 3.23e-01 100.0% 26.5%
3700578 708.1.1.0 beta complex topology › ETN0001 domain-like › ETN0001 domain-like › NAC/WRKY/GCM/WOPR domain 0.60 50.0 4.89e-01 100.0% 88.3%
4218376 241.2.1.1 a+b two layers › Type III secretory system chaperone-like › Frataxin-like › Frataxin-like › Frataxin_Cyay 0.60 49.0 4.19e-01 100.0% 86.0%
3273263 5.1.4.169 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Beta-prop_RSE1_2nd 0.60 48.0 2.97e-01 100.0% 17.1%
3965099 241.2.1.1 a+b two layers › Type III secretory system chaperone-like › Frataxin-like › Frataxin-like › Frataxin_Cyay 0.59 50.0 4.15e-01 100.0% 81.9%
3587052 331.2.1.0 a+b two layers › TBP-like › Phosphoglucomutase, C-terminal domain › Phosphoglucomutase, C-terminal domain 0.58 47.0 4.05e-01 96.3% 55.8%
4992901 3740.1.1.4 alpha arrays › F420-reducing hydrogenase subunit beta › F420-reducing hydrogenase subunit beta › F420-reducing hydrogenase subunit beta › FrhB_FdhB_C 0.57 44.0 2.95e-01 92.6% 19.2%
4269264 2.1.1.60 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › RsgI_N 0.56 41.0 4.39e-01 77.8% 97.8%
5009324 218.4.1.1 a+b two layers › Enolase-N/ribosomal protein › Dhaf4260 N-terminal domain › Dhaf4260 N-terminal domain › DUF4213 0.56 39.0 3.55e-01 77.8% 81.2%
3664331 77.3.1.3 beta meanders › open-sided beta-meander › CPAP G-box domain › CPAP G-box domain › MORN 0.55 47.0 3.72e-01 98.1% 47.5%
3413033 4099.1.1.0 a+b two layers › Kinetochore globular domain-like › Kinetochore globular domain-like › Kinetochore globular domain-like 0.55 45.0 3.66e-01 100.0% 91.7%
4313114 378.1.1.30 few secondary structure elements › His-Me finger endonucleases › His-Me finger endonucleases › His-Me finger endonucleases › PF30178 0.55 46.0 3.55e-01 92.6% 71.7%
4649150 63.1.1.0 beta barrels › Mannose 6-phosphate receptor domain › Mannose 6-phosphate receptor domain › Mannose 6-phosphate receptor domain 0.55 43.0 3.33e-01 98.1% 71.6%
4947198 300.1.1.0 a+b three layers › Phospholipase D/nuclease › Phospholipase D/nuclease › Phospholipase D/nuclease 0.54 40.0 3.06e-01 88.9% 69.7%
5073939 300.1.1.0 a+b three layers › Phospholipase D/nuclease › Phospholipase D/nuclease › Phospholipase D/nuclease 0.53 39.0 3.06e-01 88.9% 74.5%
3384946 5.1.10.7 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 12-bladed › RCC1, RCC1_2 0.53 44.0 3.44e-01 100.0% 44.4%
2482315 2.1.1.60 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › RsgI_N 0.53 40.0 4.10e-01 83.3% 92.5%
4532808 2.1.1.60 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › RsgI_N 0.53 39.0 4.03e-01 79.6% 92.0%
4614224 2.1.1.60 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › RsgI_N 0.52 38.0 3.98e-01 81.5% 94.0%
4384294 2.1.1.60 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › RsgI_N 0.52 36.0 4.03e-01 75.9% 100.0%
4512566 2.1.1.60 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › RsgI_N 0.51 36.0 3.88e-01 74.1% 88.9%
3967108 2.4.1.0 beta barrels › OB-fold › MOP-like › MOP-like 0.51 36.0 3.98e-01 75.9% 100.0%