←Back to structures

EU021726.1__ABW90581.1__X__00001

Bact-Vir

EU021726.1__ABW90581.1__X__00001

Identity

Accession:
EU021726 ↗
Kingdom:
phage

Quality

82.2 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Sendosyvirus› Bacteriophage_APSE-2

TaxID: 340054

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 3-171
PDB
Domain cluster: rep: MK448641.1__QBX13135.1__JavanS753_0014__00014__D40-226
CATH (16)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3rrkA03 3.30.70.2750 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.72 33.0 4.94e-01 79.3% 100.0%
2faoA01 3.90.920.10 Alpha Beta › Alpha-Beta Complex › DNA primase, PRIM domain › DNA primase, PRIM domain 0.65 60.0 5.02e-01 99.4% 91.5%
2ywwA01 3.30.70.140 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Aspartate carbamoyltransferase regulatory subunit, N-terminal domain 0.64 34.0 4.38e-01 70.4% 91.2%
3nwgA02 3.30.70.1710 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › BMC (bacterial microcompartment) domain 0.64 36.0 4.46e-01 87.6% 91.1%
1z1dB00 3.40.1310.20 Alpha Beta › 3-Layer(aba) Sandwich › Replication Protein E1; Chain: A, › 0.62 40.0 4.48e-01 81.1% 82.4%
1r9wA00 3.40.1310.10 Alpha Beta › 3-Layer(aba) Sandwich › Replication Protein E1; Chain: A, › 0.59 41.0 4.53e-01 85.2% 87.0%
1f5aA01 3.30.70.590 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Poly(A) polymerase predicted RNA binding domain 0.58 37.0 4.49e-01 84.6% 100.0%
1f08B00 3.40.1310.10 Alpha Beta › 3-Layer(aba) Sandwich › Replication Protein E1; Chain: A, › 0.58 42.0 4.49e-01 84.6% 86.9%
1kbaA00 2.10.60.10 Mainly Beta › Ribbon › CD59 › CD59 0.55 22.0 3.27e-01 73.4% 87.9%
7as8L01 3.30.70.1730 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Ribosomal protein L10, N-terminal RNA-binding domain 0.54 34.0 4.09e-01 98.2% 95.5%
3aawA02 3.30.2130.10 Alpha Beta › 2-Layer Sandwich › VC0802-like › VC0802-like 0.53 37.0 3.83e-01 71.6% 74.5%
5eufA02 3.30.830.10 Alpha Beta › 2-Layer Sandwich › Cytochrome Bc1 Complex; Chain A, domain 1 › Metalloenzyme, LuxS/M16 peptidase-like 0.53 39.0 3.83e-01 76.9% 98.4%
4v19J00 3.30.70.1730 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Ribosomal protein L10, N-terminal RNA-binding domain 0.51 36.0 3.64e-01 97.0% 71.4%
5o60I00 3.30.70.1730 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Ribosomal protein L10, N-terminal RNA-binding domain 0.50 36.0 4.03e-01 97.0% 96.8%
2xliA01 3.30.70.2540 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › CRISPR-associated endoribonuclease Cas6/Csy4 0.50 37.0 3.86e-01 75.7% 92.9%
1zavA01 3.30.70.1730 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Ribosomal protein L10, N-terminal RNA-binding domain 0.50 37.0 4.06e-01 99.4% 94.8%
ECOD (19)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4031372 862.1.1.12 ↗ a+b complex topology › Prim-pol domain › Prim-pol domain › Prim-pol domain › PF29905 0.83 77.0 7.23e-01 100.0% 82.0%
3587269 862.1.1.0 ↗ a+b complex topology › Prim-pol domain › Prim-pol domain › Prim-pol domain 0.71 67.0 6.36e-01 100.0% 97.9%
5011497 862.1.1.0 ↗ a+b complex topology › Prim-pol domain › Prim-pol domain › Prim-pol domain 0.69 63.0 5.95e-01 96.4% 93.0%
3959043 862.1.1.0 ↗ a+b complex topology › Prim-pol domain › Prim-pol domain › Prim-pol domain 0.65 61.0 4.85e-01 100.0% 78.8%
3108806 304.54.1.1 ↗ a+b two layers › Alpha-beta plaits › CcmK-like › CcmK-like › BMC 0.65 37.0 4.74e-01 88.2% 100.0%
4984346 304.38.1.1 ↗ a+b two layers › Alpha-beta plaits › Aspartate carbamoyltransferase, Regulatory-chain, N-terminal domain › Aspartate carbamoyltransferase, Regulatory-chain, N-terminal domain › PyrI 0.64 33.0 4.31e-01 73.4% 90.0%
3989046 862.1.1.8 ↗ a+b complex topology › Prim-pol domain › Prim-pol domain › Prim-pol domain › AEP-TOTE 0.63 59.0 5.33e-01 100.0% 97.8%
2721360 862.1.1.0 ↗ a+b complex topology › Prim-pol domain › Prim-pol domain › Prim-pol domain 0.63 59.0 5.74e-01 100.0% 95.7%
5112 304.55.1.10 ↗ a+b two layers › Alpha-beta plaits › Origin of replication-binding domains › Origin of replication-binding domains › PPV_E1_DBD 0.59 41.0 4.53e-01 85.2% 87.0%
4475127 304.55.1.3 ↗ a+b two layers › Alpha-beta plaits › Origin of replication-binding domains › Origin of replication-binding domains › Rep_OBD 0.59 40.0 4.60e-01 71.6% 93.6%
3733555 304.6.1.0 ↗ a+b two layers › Alpha-beta plaits › FAD-linked oxidases, C-terminal domain › FAD-linked oxidases, C-terminal domain 0.57 40.0 3.42e-01 71.0% 61.5%
3227524 304.9.1.0 ↗ a+b two layers › Alpha-beta plaits › RNA-binding domain, RBD › RNA-binding domain, RBD 0.57 34.0 3.90e-01 75.7% 81.7%
3939479 390.1.1.0 ↗ few secondary structure elements › Hairpin loop containing domain-like › Hairpin loop containing domain-like › Hairpin loop containing domain-like 0.55 26.0 3.66e-01 92.9% 97.3%
3573192 390.1.1.4 ↗ few secondary structure elements › Hairpin loop containing domain-like › Hairpin loop containing domain-like › Hairpin loop containing domain-like › MANEC 0.55 31.0 3.77e-01 94.7% 86.7%
3242164 304.9.1.0 ↗ a+b two layers › Alpha-beta plaits › RNA-binding domain, RBD › RNA-binding domain, RBD 0.54 32.0 3.98e-01 100.0% 99.0%
3982961 304.6.1.1 ↗ a+b two layers › Alpha-beta plaits › FAD-linked oxidases, C-terminal domain › FAD-linked oxidases, C-terminal domain › FAD-oxidase_C 0.53 42.0 3.52e-01 85.2% 86.6%
3407050 390.1.1.1 ↗ few secondary structure elements › Hairpin loop containing domain-like › Hairpin loop containing domain-like › Hairpin loop containing domain-like › PAN_1 0.53 27.0 3.61e-01 94.1% 95.3%
4027899 390.1.1.0 ↗ few secondary structure elements › Hairpin loop containing domain-like › Hairpin loop containing domain-like › Hairpin loop containing domain-like 0.53 26.0 3.49e-01 94.7% 89.8%
4949654 2003.1.2.17 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain › Amino_oxidase 0.51 42.0 3.22e-01 88.2% 83.5%