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EU197055.1__ABY63036.1__201phi2-1p207__00204
Bact-VirEU197055.1__ABY63036.1__201phi2-1p207__00204
Identity
- Accession:
- EU197055 ↗
- Kingdom:
- phage
Quality
46.3
mean pLDDT
Taxonomy
Heunggongvirae›
Uroviricota›
Caudoviricetes›
Chimalliviridae›
Serwervirus›
Pseudomonas_phage_201phi2-1
TaxID: 198110
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 117-223
D2
medium
residues 35-73
Domain cluster:
representative
CATH (29)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3n3fA01 | 3.40.1620.70 | Alpha Beta › 3-Layer(aba) Sandwich › YefM-like fold › | 0.82 | 68.0 | 6.65e-01 | 97.4% | 95.3% |
| 3hshE00 | 3.40.1620.70 | Alpha Beta › 3-Layer(aba) Sandwich › YefM-like fold › | 0.80 | 66.0 | 6.06e-01 | 100.0% | 76.4% |
| 4bndA01 | 3.40.50.1000 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › HAD superfamily/HAD-like | 0.73 | 60.0 | 4.07e-01 | 100.0% | 31.4% |
| 1yu0A01 | 2.10.10.30 | Mainly Beta › Ribbon › Seminal Fluid Protein PDC-109 (Domain B) › | 0.72 | 60.0 | 5.60e-01 | 100.0% | 80.4% |
| 4q6bA02 | 3.40.50.2300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator | 0.72 | 53.0 | 3.67e-01 | 100.0% | 23.9% |
| 4khbC00 | 2.30.29.210 | Mainly Beta › Roll › PH-domain like › FACT complex subunit Spt16p/Cdc68p | 0.70 | 50.0 | 3.75e-01 | 87.2% | 29.2% |
| 3hutA02 | 3.40.50.2300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator | 0.68 | 56.0 | 3.84e-01 | 100.0% | 32.0% |
| 2fb5A02 | 3.40.1700.10 | Alpha Beta › 3-Layer(aba) Sandwich › YojJ-like (1 › DNA integrity scanning protein, DisA, N-terminal domain | 0.66 | 54.0 | 3.87e-01 | 100.0% | 90.9% |
| 2gfoA00 | 3.90.70.10 | Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › Cysteine proteinases | 0.66 | 48.0 | 2.87e-01 | 84.6% | 91.4% |
| 1ym5A01 | 3.10.310.10 | Alpha Beta › Roll › Diaminopimelate Epimerase; Chain A, domain 1 › Diaminopimelate Epimerase; Chain A, domain 1 | 0.63 | 51.0 | 3.69e-01 | 100.0% | 45.6% |
| 3mqgA02 | 2.20.70.110 | Mainly Beta › Single Sheet › Ubiquitin Ligase Nedd4; Chain: W; › | 0.62 | 46.0 | 4.68e-01 | 87.2% | 94.9% |
| 4mnkA02 | 3.10.50.10 | Alpha Beta › Roll › Chitinase A; domain 3 › | 0.62 | 43.0 | 3.70e-01 | 74.4% | 83.1% |
| 3oa5A01 | 3.10.50.10 | Alpha Beta › Roll › Chitinase A; domain 3 › | 0.60 | 50.0 | 3.51e-01 | 97.4% | 53.0% |
| 3cxgA00 | 3.40.30.10 | Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Glutaredoxin | 0.60 | 50.0 | 3.63e-01 | 100.0% | 73.0% |
| 3oymA01 | 1.10.340.70 | Mainly Alpha › Orthogonal Bundle › Endonuclease III; domain 1 › | 0.60 | 38.0 | 2.90e-01 | 97.4% | 25.8% |
| 4dunA01 | 3.10.310.10 | Alpha Beta › Roll › Diaminopimelate Epimerase; Chain A, domain 1 › Diaminopimelate Epimerase; Chain A, domain 1 | 0.60 | 46.0 | 3.48e-01 | 100.0% | 47.2% |
| 3alfA02 | 3.10.50.10 | Alpha Beta › Roll › Chitinase A; domain 3 › | 0.58 | 41.0 | 3.46e-01 | 74.4% | 84.3% |
| 4paaA02 | 3.30.9.10 | Alpha Beta › 2-Layer Sandwich › D-Amino Acid Oxidase; Chain A, domain 2 › D-Amino Acid Oxidase, subunit A, domain 2 | 0.58 | 47.0 | 3.24e-01 | 100.0% | 60.0% |
| 3lmmA01 | 3.30.950.30 | Alpha Beta › 2-Layer Sandwich › Methyltransferase, Cobalt-precorrin-4 Transmethylase; Domain 2 › Schlafen, AAA domain | 0.58 | 43.0 | 3.01e-01 | 87.2% | 62.3% |
| 3n7zB03 | 3.30.1050.10 | Alpha Beta › 2-Layer Sandwich › Nonspecific Lipid-transfer Protein; Chain A › SCP2 sterol-binding domain | 0.58 | 43.0 | 3.40e-01 | 87.2% | 48.4% |
| 2kxpA01 | 3.30.1140.60 | Alpha Beta › 2-Layer Sandwich › Ribosomal protein S3 C-terminal domain › F-actin capping protein, alpha subunit | 0.57 | 44.0 | 3.25e-01 | 87.2% | 33.6% |
| 4gc1A01 | 2.90.10.10 | Mainly Beta › Orthogonal Prism › Agglutinin, subunit A › Bulb-type lectin domain | 0.55 | 42.0 | 3.32e-01 | 100.0% | 36.5% |
| 4bi3A01 | 3.90.1720.80 | Alpha Beta › Alpha-Beta Complex › endopeptidase fold (from Nostoc punctiforme) › | 0.55 | 41.0 | 3.46e-01 | 100.0% | 61.5% |
| 2otnB01 | 3.10.310.10 | Alpha Beta › Roll › Diaminopimelate Epimerase; Chain A, domain 1 › Diaminopimelate Epimerase; Chain A, domain 1 | 0.54 | 40.0 | 2.99e-01 | 100.0% | 40.4% |
| 2dy1A01 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.54 | 41.0 | 2.50e-01 | 94.9% | 12.0% |
| 3qs2A00 | 2.60.40.3290 | Mainly Beta › Sandwich › Immunoglobulin-like › Fimbrial protein EcpA | 0.54 | 37.0 | 2.55e-01 | 76.9% | 19.7% |
| 1gpcA00 | 3.90.198.10 | Alpha Beta › Alpha-Beta Complex › Replication Fork Single-Stranded DNA Binding Protein › Replication Fork Single-Stranded Dna Binding Protein | 0.53 | 39.0 | 2.55e-01 | 87.2% | 71.6% |
| 3f0zA01 | 3.30.310.260 | Alpha Beta › 2-Layer Sandwich › TATA-Binding Protein › | 0.52 | 35.0 | 2.71e-01 | 71.8% | 40.2% |
| 4chjA00 | 2.30.29.30 | Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) | 0.52 | 42.0 | 3.08e-01 | 100.0% | 35.5% |
ECOD (61)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3900165 | 3761.1.1.2 ↗ | beta duplicates or obligate multimers › Major tropism determinant (Mtd) trimerization domain-related › Major tropism determinant (Mtd) trimerization domain-related › Major tropism determinant (Mtd) trimerization domain-related › Collagen_trimer | 0.89 | 77.0 | 7.51e-01 | 97.4% | 95.3% |
| 3405960 | 3761.1.1.2 ↗ | beta duplicates or obligate multimers › Major tropism determinant (Mtd) trimerization domain-related › Major tropism determinant (Mtd) trimerization domain-related › Major tropism determinant (Mtd) trimerization domain-related › Collagen_trimer | 0.88 | 78.0 | 7.56e-01 | 100.0% | 97.7% |
| 3623217 | 3761.1.1.2 ↗ | beta duplicates or obligate multimers › Major tropism determinant (Mtd) trimerization domain-related › Major tropism determinant (Mtd) trimerization domain-related › Major tropism determinant (Mtd) trimerization domain-related › Collagen_trimer | 0.88 | 76.0 | 7.06e-01 | 100.0% | 84.0% |
| 3917719 | 3761.1.1.2 ↗ | beta duplicates or obligate multimers › Major tropism determinant (Mtd) trimerization domain-related › Major tropism determinant (Mtd) trimerization domain-related › Major tropism determinant (Mtd) trimerization domain-related › Collagen_trimer | 0.87 | 75.0 | 7.20e-01 | 97.4% | 91.1% |
| 3498702 | 3761.1.1.2 ↗ | beta duplicates or obligate multimers › Major tropism determinant (Mtd) trimerization domain-related › Major tropism determinant (Mtd) trimerization domain-related › Major tropism determinant (Mtd) trimerization domain-related › Collagen_trimer | 0.84 | 69.0 | 6.67e-01 | 94.9% | 95.6% |
| 3528795 | 3761.1.1.0 ↗ | beta duplicates or obligate multimers › Major tropism determinant (Mtd) trimerization domain-related › Major tropism determinant (Mtd) trimerization domain-related › Major tropism determinant (Mtd) trimerization domain-related | 0.83 | 71.0 | 6.88e-01 | 100.0% | 86.7% |
| 1281772 | 3761.1.1.2 ↗ | beta duplicates or obligate multimers › Major tropism determinant (Mtd) trimerization domain-related › Major tropism determinant (Mtd) trimerization domain-related › Major tropism determinant (Mtd) trimerization domain-related › Collagen_trimer | 0.83 | 69.0 | 6.34e-01 | 100.0% | 77.8% |
| 1505155 | 3761.1.1.2 ↗ | beta duplicates or obligate multimers › Major tropism determinant (Mtd) trimerization domain-related › Major tropism determinant (Mtd) trimerization domain-related › Major tropism determinant (Mtd) trimerization domain-related › Collagen_trimer | 0.81 | 66.0 | 6.07e-01 | 100.0% | 75.0% |
| 3987740 | 3761.1.1.0 ↗ | beta duplicates or obligate multimers › Major tropism determinant (Mtd) trimerization domain-related › Major tropism determinant (Mtd) trimerization domain-related › Major tropism determinant (Mtd) trimerization domain-related | 0.81 | 67.0 | 6.73e-01 | 100.0% | 95.0% |
| 3989854 | 3761.1.1.4 ↗ | beta duplicates or obligate multimers › Major tropism determinant (Mtd) trimerization domain-related › Major tropism determinant (Mtd) trimerization domain-related › Major tropism determinant (Mtd) trimerization domain-related › CFSR | 0.80 | 66.0 | 5.22e-01 | 100.0% | 44.7% |
| 2495545 | 207.2.1.22 ↗ | beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Pectin lyase-like › Pectin lyase-like › Beta_helix | 0.80 | 67.0 | 3.77e-01 | 100.0% | 8.8% |
| 3989853 | 77.1.1.13 ↗ | beta meanders › open-sided beta-meander › Outer surface protein › Outer surface protein › CFSR | 0.79 | 64.0 | 3.76e-01 | 100.0% | 11.7% |
| 3523657 | 5.1.4.18 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › EPTP | 0.78 | 53.0 | 3.03e-01 | 71.8% | 7.6% |
| 4632068 | 4126.1.1.6 ↗ | a/b three-layered sandwiches › beta-carbonic anhydrase-like › beta-carbonic anhydrase › beta-carbonic anhydrase › DabA | 0.78 | 67.0 | 4.09e-01 | 100.0% | 21.3% |
| 4419934 | 4126.1.1.6 ↗ | a/b three-layered sandwiches › beta-carbonic anhydrase-like › beta-carbonic anhydrase › beta-carbonic anhydrase › DabA | 0.76 | 63.0 | 3.96e-01 | 100.0% | 22.4% |
| 3921177 | 3761.1.1.0 ↗ | beta duplicates or obligate multimers › Major tropism determinant (Mtd) trimerization domain-related › Major tropism determinant (Mtd) trimerization domain-related › Major tropism determinant (Mtd) trimerization domain-related | 0.76 | 62.0 | 5.63e-01 | 100.0% | 67.3% |
| 2075817 | 2006.1.1.0 ↗ | a/b three-layered sandwiches › HAD domain-like › HAD domain-related › HAD-like | 0.73 | 59.0 | 4.69e-01 | 97.4% | 55.8% |
| 4206587 | 2007.1.2.47 ↗ | a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › Periplasmic binding protein-like I › DabA | 0.72 | 59.0 | 3.94e-01 | 100.0% | 29.1% |
| 1107990 | 3761.1.1.1 ↗ | beta duplicates or obligate multimers › Major tropism determinant (Mtd) trimerization domain-related › Major tropism determinant (Mtd) trimerization domain-related › Major tropism determinant (Mtd) trimerization domain-related › Mtd_N | 0.72 | 60.0 | 5.64e-01 | 100.0% | 82.0% |
| 3620101 | 391.1.2.1 ↗ | few secondary structure elements › Fibronectin type I module-like › Fibronectin type I module-like › VWC domain-related › VWC | 0.71 | 54.0 | 4.51e-01 | 84.6% | 51.4% |
| 4279233 | 4126.1.1.6 ↗ | a/b three-layered sandwiches › beta-carbonic anhydrase-like › beta-carbonic anhydrase › beta-carbonic anhydrase › DabA | 0.71 | 57.0 | 3.51e-01 | 100.0% | 18.9% |
| 3262323 | 220.1.1.21 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like › SPT16 | 0.70 | 49.0 | 3.45e-01 | 87.2% | 22.2% |
| 4999472 | 101.1.8.1 ↗ | alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase | 0.70 | 58.0 | 3.77e-01 | 100.0% | 21.6% |
| 4512216 | 375.1.1.0 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related | 0.70 | 52.0 | 4.96e-01 | 87.2% | 78.0% |
| 3310464 | 375.1.1.69 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › zinc_ribbon_12 | 0.69 | 51.0 | 4.80e-01 | 84.6% | 78.0% |
| 3575826 | 391.1.1.0 ↗ | few secondary structure elements › Fibronectin type I module-like › Fibronectin type I module-like › Fibronectin type I module | 0.69 | 50.0 | 4.73e-01 | 84.6% | 64.0% |
| 3301125 | 220.1.1.21 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like › SPT16 | 0.68 | 48.0 | 3.44e-01 | 87.2% | 24.0% |
| 3407018 | 391.1.2.11 ↗ | few secondary structure elements › Fibronectin type I module-like › Fibronectin type I module-like › VWC domain-related › VWC2L_2nd | 0.68 | 50.0 | 4.43e-01 | 84.6% | 53.3% |
| 4399997 | 286.1.1.1 ↗ | a+b complex topology › Diaminopimelate epimerase-like › Diaminopimelate epimerase-like › Diaminopimelate epimerase-like › DAP_epimerase | 0.68 | 57.0 | 3.90e-01 | 100.0% | 40.7% |
| 3520959 | 391.1.1.0 ↗ | few secondary structure elements › Fibronectin type I module-like › Fibronectin type I module-like › Fibronectin type I module | 0.68 | 49.0 | 5.15e-01 | 79.5% | 91.4% |
| 3582142 | 2007.1.2.0 ↗ | a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › Periplasmic binding protein-like I | 0.68 | 56.0 | 3.67e-01 | 100.0% | 28.6% |
| 4578847 | 702.1.1.3 ↗ | beta duplicates or obligate multimers › beta-hairpin stack › beta-hairpin stack › beta-hairpin stack › Choline_bind_1,Choline_bind_2 | 0.67 | 49.0 | 2.87e-01 | 82.1% | 16.9% |
| 4201251 | 2006.1.1.7 ↗ | a/b three-layered sandwiches › HAD domain-like › HAD domain-related › HAD-like › S6PP | 0.65 | 53.0 | 3.28e-01 | 100.0% | 16.4% |
| 4198047 | 391.1.1.5 ↗ | few secondary structure elements › Fibronectin type I module-like › Fibronectin type I module-like › Fibronectin type I module › TILa | 0.65 | 47.0 | 4.76e-01 | 84.6% | 80.0% |
| 3545467 | 391.1.2.10 ↗ | few secondary structure elements › Fibronectin type I module-like › Fibronectin type I module-like › VWC domain-related › VWC2L_1st | 0.64 | 46.0 | 4.65e-01 | 82.1% | 80.0% |
| 3970156 | 286.1.1.0 ↗ | a+b complex topology › Diaminopimelate epimerase-like › Diaminopimelate epimerase-like › Diaminopimelate epimerase-like | 0.63 | 50.0 | 3.79e-01 | 100.0% | 53.0% |
| 3893051 | 391.1.1.5 ↗ | few secondary structure elements › Fibronectin type I module-like › Fibronectin type I module-like › Fibronectin type I module › TILa | 0.63 | 45.0 | 4.62e-01 | 84.6% | 88.6% |
| 3967702 | 286.1.1.2 ↗ | a+b complex topology › Diaminopimelate epimerase-like › Diaminopimelate epimerase-like › Diaminopimelate epimerase-like › PhzC-PhzF | 0.63 | 51.0 | 3.75e-01 | 100.0% | 49.6% |
| 3501515 | 391.1.2.9 ↗ | few secondary structure elements › Fibronectin type I module-like › Fibronectin type I module-like › VWC domain-related › Fn1_2 | 0.62 | 45.0 | 3.77e-01 | 79.5% | 45.7% |
| 3613385 | 220.1.1.21 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like › SPT16 | 0.61 | 43.0 | 3.17e-01 | 87.2% | 24.8% |
| 3405538 | 219.1.1.111 ↗ | a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › Transglut_core, Rad4 | 0.61 | 45.0 | 2.80e-01 | 89.7% | 43.7% |
| 3398945 | 391.1.2.0 ↗ | few secondary structure elements › Fibronectin type I module-like › Fibronectin type I module-like › VWC domain-related | 0.61 | 44.0 | 3.23e-01 | 82.1% | 25.8% |
| 3970174 | 2003.1.3.0 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › Nucleotide-binding domain | 0.59 | 49.0 | 2.85e-01 | 100.0% | 41.4% |
| None | — | 0.58 | 47.0 | 2.74e-01 | 100.0% | 41.4% | |
| 3777158 | 11.1.1.1 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Cadherin | 0.58 | 39.0 | 2.31e-01 | 71.8% | 77.7% |
| 4055607 | 244.1.1.4 ↗ | a+b two layers › FAD-linked reductases, C-terminal domain-like › FAD-linked reductases-C › FAD-linked reductases-C › DAO | 0.58 | 48.0 | 3.31e-01 | 100.0% | 64.5% |
| None | — | 0.58 | 49.0 | 2.82e-01 | 100.0% | 43.2% | |
| 3919603 | 244.1.1.0 ↗ | a+b two layers › FAD-linked reductases, C-terminal domain-like › FAD-linked reductases-C › FAD-linked reductases-C | 0.57 | 45.0 | 3.28e-01 | 97.4% | 68.1% |
| 4477489 | 244.1.1.0 ↗ | a+b two layers › FAD-linked reductases, C-terminal domain-like › FAD-linked reductases-C › FAD-linked reductases-C | 0.57 | 48.0 | 3.37e-01 | 100.0% | 65.5% |
| 3823026 | 304.8.1.89 ↗ | a+b two layers › Alpha-beta plaits › ACT-like › ACT-like › GUB_WAK_bind | 0.57 | 45.0 | 2.97e-01 | 100.0% | 20.0% |
| 4047645 | 2003.1.3.1 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › Nucleotide-binding domain › DAO | 0.57 | 48.0 | 2.78e-01 | 100.0% | 40.3% |
| 3506791 | 2.1.1.69 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › RMI2 | 0.57 | 43.0 | 3.17e-01 | 100.0% | 74.5% |
| 3590612 | 4294.1.1.0 ↗ | few secondary structure elements › Trm112p-like › Trm112p-like › Trm112p-like | 0.57 | 44.0 | 4.44e-01 | 89.7% | 92.5% |
| 3790194 | 284.2.1.0 ↗ | a+b two layers › FKBP-like › Chitinase insertion domain › Chitinase insertion domain | 0.57 | 43.0 | 4.12e-01 | 82.1% | 100.0% |
| 1107970 | 286.1.1.2 ↗ | a+b complex topology › Diaminopimelate epimerase-like › Diaminopimelate epimerase-like › Diaminopimelate epimerase-like › PhzC-PhzF | 0.56 | 42.0 | 3.24e-01 | 100.0% | 48.0% |
| 4255854 | 4294.1.1.8 ↗ | few secondary structure elements › Trm112p-like › Trm112p-like › Trm112p-like › PF27112 | 0.56 | 43.0 | 4.11e-01 | 92.3% | 76.0% |
| 5066058 | 7571.1.1.1 ↗ | a/b three-layered sandwiches › Formyltransferase › Formyltransferase › Formyltransferase › Formyl_trans_N | 0.55 | 40.0 | 2.56e-01 | 84.6% | 99.6% |
| 3699229 | 6110.1.1.1 ↗ | alpha superhelices › Linker domain of cytoplasmic dynein heavy chain › Linker domain of cytoplasmic dynein heavy chain › Linker domain of cytoplasmic dynein heavy chain › DHC_N2 | 0.54 | 46.0 | 2.63e-01 | 100.0% | 21.5% |
| 3365003 | 11.1.4.55 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Prealbumin-like › Self-incomp_S1 | 0.53 | 44.0 | 3.33e-01 | 100.0% | 94.3% |
| 3402422 | 221.1.1.112 ↗ | a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like › ULD_3 | 0.50 | 42.0 | 3.11e-01 | 100.0% | 71.8% |
| 4980041 | 375.1.1.0 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related | 0.50 | 42.0 | 4.12e-01 | 100.0% | 93.3% |