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EU197055.1__ABY63056.1__201phi2-1p227__00224

Bact-Vir

EU197055.1__ABY63056.1__201phi2-1p227__00224

Identity

Accession:
EU197055 ↗
Kingdom:
phage

Quality

73.6 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Chimalliviridae› Serwervirus› Pseudomonas_phage_201phi2-1

TaxID: 198110

Cluster

View cluster (2 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 3-67
PDB
Domain cluster: representative
CATH (24)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1j09A04 1.10.8.70 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Glutamate-tRNA synthetase, class I, anticodon-binding domain 1 0.61 36.0 4.06e-01 73.8% 79.2%
1ng6A01 1.10.1510.10 Mainly Alpha › Orthogonal Bundle › Hypothetical Protein Yqey; Chain: A; domain1 › Uncharacterised protein YqeY/AIM41, N-terminal domain 0.60 42.0 3.76e-01 72.3% 100.0%
8a57D01 3.40.50.11060 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › GTPase HflX, N-terminal domain 0.60 42.0 3.68e-01 73.8% 95.1%
1wtyA00 1.20.120.330 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Nucleotidyltransferases domain 2 0.59 41.0 3.44e-01 73.8% 73.3%
3q8gA01 1.10.8.20 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › N-terminal domain of phosphatidylinositol transfer protein sec14p 0.59 42.0 3.96e-01 75.4% 72.2%
3s4lA00 1.10.3210.30 Mainly Alpha › Orthogonal Bundle › Hypothetical protein af1432 › 0.59 49.0 3.56e-01 95.4% 90.9%
5ux1D00 1.20.1260.10 Mainly Alpha › Up-down Bundle › Ferritin › Ferritin, core subunit, four-helix bundle 0.59 47.0 3.31e-01 86.2% 55.8%
1v66A00 1.10.720.30 Mainly Alpha › Orthogonal Bundle › Transcription Termination Factor Rho, Rna-binding Domain; Chain A, Domain 1 › SAP domain 0.58 44.0 4.48e-01 100.0% 84.6%
2o5rA04 1.10.8.70 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Glutamate-tRNA synthetase, class I, anticodon-binding domain 1 0.58 37.0 4.10e-01 72.3% 87.5%
3safA02 1.10.150.80 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › HRDC domain 0.56 41.0 3.59e-01 78.5% 66.0%
3cymA02 1.10.150.80 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › HRDC domain 0.56 42.0 3.56e-01 84.6% 80.7%
3l49A01 3.40.50.2300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator 0.55 42.0 3.48e-01 86.2% 94.6%
3oa8A01 1.10.760.10 Mainly Alpha › Orthogonal Bundle › Cytochrome Bc1 Complex; Chain D, domain 2 › Cytochrome c-like domain 0.54 43.0 3.50e-01 87.7% 79.8%
6ofsA02 3.30.830.10 Alpha Beta › 2-Layer Sandwich › Cytochrome Bc1 Complex; Chain A, domain 1 › Metalloenzyme, LuxS/M16 peptidase-like 0.54 43.0 3.10e-01 92.3% 40.6%
2pgsA02 1.10.3550.10 Mainly Alpha › Orthogonal Bundle › eoxyguanosinetriphosphate triphosphohydrolase fold › eoxyguanosinetriphosphate triphosphohydrolase domain-like 0.54 44.0 3.80e-01 100.0% 53.8%
1ck7A01 3.40.390.10 Alpha Beta › 3-Layer(aba) Sandwich › Collagenase (Catalytic Domain) › Collagenase (Catalytic Domain) 0.54 44.0 3.15e-01 98.5% 66.0%
3qbmB00 1.10.357.10 Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2 0.54 40.0 2.99e-01 86.2% 59.4%
1yt3A02 1.10.150.80 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › HRDC domain 0.54 41.0 3.62e-01 83.1% 73.7%
4i16A00 1.10.533.10 Mainly Alpha › Orthogonal Bundle › Death Domain, Fas › Death Domain, Fas 0.53 44.0 4.08e-01 98.5% 72.2%
6xzqA01 3.40.91.90 Alpha Beta › 3-Layer(aba) Sandwich › Restriction Endonuclease › Influenza RNA-dependent RNA polymerase subunit PA, endonuclease domain 0.53 38.0 2.94e-01 78.5% 71.6%
3au3A00 1.25.10.10 Mainly Alpha › Alpha Horseshoe › Leucine-rich Repeat Variant › Leucine-rich Repeat Variant 0.52 36.0 2.40e-01 75.4% 23.9%
4edgA03 1.20.50.20 Mainly Alpha › Up-down Bundle › Pheromone ER-1 › DnaG, RNA polymerase domain, helical bundle 0.51 35.0 3.66e-01 70.8% 80.0%
2d4uB00 1.20.120.30 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Aspartate receptor, ligand-binding domain 0.51 39.0 3.07e-01 87.7% 71.6%
3exnA00 3.40.630.30 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) 0.51 40.0 3.18e-01 92.3% 81.7%
ECOD (23)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4994061 601.7.1.1 ↗ alpha bundles › Four-helical up-and-down bundle › HEPN › Nucleotidyltransferase substrate binding subunit/domain › HepT-like 0.65 50.0 3.98e-01 87.7% 78.3%
5029691 601.7.1.1 ↗ alpha bundles › Four-helical up-and-down bundle › HEPN › Nucleotidyltransferase substrate binding subunit/domain › HepT-like 0.63 49.0 3.98e-01 87.7% 82.2%
3215219 371.1.1.0 ↗ few secondary structure elements › Phospholipase A2, PLA2 › Phospholipase A2, PLA2 › Phospholipase A2, PLA2 0.63 44.0 3.71e-01 72.3% 65.7%
4972496 102.2.1.0 ↗ alpha arrays › HhH/H2TH › H2TH › H2TH 0.62 54.0 4.87e-01 100.0% 86.7%
54487 601.7.1.0 ↗ alpha bundles › Four-helical up-and-down bundle › HEPN › Nucleotidyltransferase substrate binding subunit/domain 0.60 42.0 3.50e-01 73.8% 73.9%
5013151 131.1.1.0 ↗ alpha complex topology › PDEase-like › HD-domain/PDEase-like › HD-domain/PDEase-like 0.60 51.0 3.14e-01 96.9% 61.1%
3185972 102.1.1.2 ↗ alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › SAM domain-like › HRDC 0.57 44.0 3.67e-01 83.1% 62.6%
3970275 2498.1.1.10 ↗ mixed a+b and a/b › Zincin-like › "Metalloproteases (""zincins"") catalytic domain" › "Metalloproteases (""zincins"") catalytic domain" › Peptidase_M48 0.57 45.0 3.08e-01 87.7% 64.1%
3420324 601.7.1.0 ↗ alpha bundles › Four-helical up-and-down bundle › HEPN › Nucleotidyltransferase substrate binding subunit/domain 0.56 43.0 3.93e-01 87.7% 66.0%
3594797 109.4.1.0 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.56 40.0 2.86e-01 76.9% 37.6%
3231388 103.4.1.3 ↗ alpha arrays › RuvA-C › Elongation factor TFIIS domain 2/ Kix domain of creb binding protein › Elongation factor TFIIS domain 2/ Kix domain of creb binding protein › Med15_N 0.56 39.0 3.88e-01 100.0% 68.6%
4014535 109.4.1.0 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.56 39.0 2.81e-01 73.8% 29.7%
3478660 110.1.1.0 ↗ alpha arrays › DEATH domain › DEATH domain › DEATH domain 0.55 47.0 4.15e-01 95.4% 92.6%
4309138 604.6.1.37 ↗ alpha bundles › Spectrin repeat-like › GAT-like domain › GAT-like domain › PF30537 0.55 39.0 3.94e-01 76.9% 76.9%
3432349 601.7.1.0 ↗ alpha bundles › Four-helical up-and-down bundle › HEPN › Nucleotidyltransferase substrate binding subunit/domain 0.55 46.0 3.86e-01 98.5% 71.7%
4014379 149.1.1.0 ↗ alpha arrays › Cytochrome P450 › Cytochrome P450 › Cytochrome P450 0.54 40.0 2.45e-01 80.0% 29.6%
4995587 3352.1.1.50 ↗ alpha bundles › STT3/PglB/AglB transmembrane domain › STT3/PglB/AglB transmembrane domain › STT3/PglB/AglB transmembrane domain › DUF2298 0.53 44.0 2.69e-01 96.9% 26.6%
3618000 108.1.1.0 ↗ alpha arrays › EF-hand › EF-hand-related › EF-hand 0.53 43.0 4.01e-01 93.8% 90.6%
4310158 149.1.1.1 ↗ alpha arrays › Cytochrome P450 › Cytochrome P450 › Cytochrome P450 › p450 0.53 39.0 2.35e-01 80.0% 29.4%
2043023 102.1.1.2 ↗ alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › SAM domain-like › HRDC 0.52 35.0 3.26e-01 100.0% 54.9%
4248030 149.1.1.1 ↗ alpha arrays › Cytochrome P450 › Cytochrome P450 › Cytochrome P450 › p450 0.51 40.0 2.42e-01 86.2% 72.6%
169918 213.1.1.1 ↗ a+b three layers › Nat/Ivy › Acyl-CoA N-acyltransferases (Nat) › Acyl-CoA N-acyltransferases (Nat) › Acetyltransf_1 0.51 40.0 3.17e-01 92.3% 81.2%
3627090 190.1.1.1 ↗ alpha arrays › HMG-box-like › HMG-box › HMG-box › HMG_box 0.50 34.0 3.41e-01 100.0% 67.1%
D2 high residues 75-132
PDB