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EU197055.1__ABY63163.1__201phi2-1p338__00333

Bact-Vir

EU197055.1__ABY63163.1__201phi2-1p338__00333

Identity

Accession:
EU197055 ↗
Kingdom:
phage

Quality

72.9 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Chimalliviridae› Serwervirus› Pseudomonas_phage_201phi2-1

TaxID: 198110

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 4-128
PDB
Domain cluster: rep: LC765218.1__BEG72506.1__RVBP21_1340__00134__D5-121
CATH (23)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
4mbrA01 2.60.40.1280 Mainly Beta › Sandwich › Immunoglobulin-like › 0.62 42.0 3.99e-01 92.0% 58.0%
4mboA01 2.60.40.1280 Mainly Beta › Sandwich › Immunoglobulin-like › 0.60 41.0 3.87e-01 92.0% 57.6%
2nq3A00 2.60.40.150 Mainly Beta › Sandwich › Immunoglobulin-like › C2 domain 0.59 42.0 4.22e-01 74.4% 92.4%
4h61A00 3.10.450.580 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › Mediator complex, subunit Med6 0.58 41.0 4.05e-01 73.6% 82.5%
3uh0A01 3.30.930.10 Alpha Beta › 2-Layer Sandwich › BirA Bifunctional Protein; domain 2 › Bira Bifunctional Protein; Domain 2 0.57 43.0 3.30e-01 79.2% 80.4%
4dkkA02 3.30.160.20 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › 0.56 32.0 4.00e-01 79.2% 94.6%
1t4lB00 3.30.160.20 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › 0.56 33.0 3.80e-01 80.8% 81.1%
3sc7X01 2.115.10.20 Mainly Beta › 5 Propeller › Tachylectin-2; Chain A › Glycosyl hydrolase domain; family 43 0.55 38.0 2.86e-01 71.2% 76.8%
7zvmA01 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.55 34.0 3.75e-01 91.2% 75.5%
7a1rA01 2.60.40.150 Mainly Beta › Sandwich › Immunoglobulin-like › C2 domain 0.54 39.0 4.01e-01 74.4% 99.2%
1sefA01 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.53 35.0 3.51e-01 92.8% 62.6%
5wl1A02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.53 35.0 3.85e-01 90.4% 83.2%
5u55A02 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.53 36.0 3.63e-01 91.2% 68.9%
2c4iA01 2.40.128.30 Mainly Beta › Beta Barrel › Lipocalin › Avidin-like 0.53 36.0 3.76e-01 70.4% 99.2%
4grhA00 3.60.120.10 Alpha Beta › 4-Layer Sandwich › Anthranilate synthase › Anthranilate synthase 0.53 43.0 2.95e-01 87.2% 60.0%
3cu3A00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.53 40.0 3.67e-01 79.2% 74.1%
3d3lA02 3.10.450.60 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.52 33.0 3.92e-01 74.4% 97.5%
2cm5A00 2.60.40.150 Mainly Beta › Sandwich › Immunoglobulin-like › C2 domain 0.52 36.0 3.48e-01 71.2% 94.4%
1iwmA00 2.50.20.10 Mainly Beta › Clam › outer membrane lipoprotein receptor (LolB), chain A › Lipoprotein localisation LolA/LolB/LppX 0.51 38.0 3.40e-01 76.8% 93.2%
3nkgA00 2.60.120.790 Mainly Beta › Sandwich › Jelly Rolls › 0.51 44.0 4.01e-01 95.2% 99.4%
1w15A00 2.60.40.150 Mainly Beta › Sandwich › Immunoglobulin-like › C2 domain 0.51 36.0 3.59e-01 72.8% 99.2%
3ebyA00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.51 41.0 3.83e-01 86.4% 82.4%
1dglA00 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.50 44.0 3.63e-01 98.4% 96.6%
ECOD (25)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4126991 243.3.1.0 ↗ a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin 0.64 37.0 4.30e-01 77.6% 80.0%
4976136 331.10.2.0 ↗ a+b two layers › TBP-like › S-adenosylmethionine decarboxylase-related › Bacterial S-adenosylmethionine decarboxylase 0.63 45.0 5.05e-01 80.0% 95.8%
3584522 331.19.1.3 ↗ a+b two layers › TBP-like › Toxin RnlA N-terminal domains › Toxin RnlA N-terminal domains › CPSF73-100_C 0.62 45.0 5.07e-01 83.2% 98.9%
3393161 314.1.1.0 ↗ a+b three layers › Class II aaRS and biotin synthetases › Class II aaRS and biotin synthetases › Class II aaRS and biotin synthetases 0.61 46.0 3.67e-01 78.4% 76.3%
3398308 11.2.1.1 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › C2 domain › C2 domain › C2 0.61 44.0 4.50e-01 74.4% 96.7%
3264380 11.2.1.1 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › C2 domain › C2 domain › C2 0.59 43.0 4.24e-01 74.4% 91.5%
3427650 331.2.1.0 ↗ a+b two layers › TBP-like › Phosphoglucomutase, C-terminal domain › Phosphoglucomutase, C-terminal domain 0.59 46.0 4.50e-01 84.0% 90.7%
3264903 3195.1.1.1 ↗ extended segments › Mediator of RNA polymerase II transcription subunit 6 › Mediator of RNA polymerase II transcription subunit 6 › Mediator of RNA polymerase II transcription subunit 6 › Med6 0.58 41.0 3.98e-01 72.0% 72.9%
3410856 11.2.1.38 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › C2 domain › C2 domain › Bfc 0.58 40.0 3.80e-01 70.4% 99.3%
3246852 3195.1.1.1 ↗ extended segments › Mediator of RNA polymerase II transcription subunit 6 › Mediator of RNA polymerase II transcription subunit 6 › Mediator of RNA polymerase II transcription subunit 6 › Med6 0.58 41.0 3.89e-01 72.0% 73.1%
3600143 11.2.1.1 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › C2 domain › C2 domain › C2 0.58 42.0 3.93e-01 74.4% 96.0%
3738660 11.2.1.1 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › C2 domain › C2 domain › C2 0.58 42.0 4.15e-01 74.4% 97.7%
3927917 11.2.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › C2 domain › C2 domain 0.57 41.0 3.65e-01 74.4% 87.4%
4928958 4200.1.1.2 ↗ beta barrels › YmcC-like › YmcC-like › YmcC-like › DUF3108_like 0.56 41.0 3.61e-01 75.2% 87.0%
3592741 330.1.1.0 ↗ a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like 0.56 33.0 3.89e-01 81.6% 84.7%
3615641 330.1.1.0 ↗ a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like 0.56 33.0 3.86e-01 80.8% 84.7%
3397999 11.2.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › C2 domain › C2 domain 0.55 40.0 4.34e-01 75.2% 100.0%
3635821 206.1.1.0 ↗ a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase 0.55 29.0 2.33e-01 72.8% 23.1%
4028719 11.2.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › C2 domain › C2 domain 0.55 43.0 4.07e-01 100.0% 70.3%
3572755 330.1.1.6 ↗ a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like › Staufen_C 0.55 32.0 3.35e-01 80.0% 60.9%
1323413 330.10.1.1 ↗ a+b two layers › dsRBD-like › Heterocyclase TruD C-terminal domain › Heterocyclase TruD C-terminal domain › YcaO 0.53 34.0 3.75e-01 84.0% 79.4%
3709520 11.2.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › C2 domain › C2 domain 0.53 38.0 3.67e-01 73.6% 78.6%
3946522 9.1.1.36 ↗ beta barrels › Lipocalins/Streptavidin › Lipocalins › Lipocalins › DUF3833 0.53 41.0 3.90e-01 84.8% 99.4%
3507914 2004.1.1.294 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › ELP6 0.52 36.0 2.98e-01 72.8% 98.7%
3328359 844.1.1.2 ↗ beta barrels › Transcriptional factor tubby, C-terminal domain › Transcriptional factor tubby, C-terminal domain › Transcriptional factor tubby, C-terminal domain › LOR 0.50 42.0 3.60e-01 89.6% 90.3%