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EU408779.1__ACB54903.1__X__00004

Bact-Vir

EU408779.1__ACB54903.1__X__00004

Identity

Accession:
EU408779 ↗
Kingdom:
phage

Quality

90.3 mean pLDDT

Taxonomy

Bamfordvirae› Preplasmiviricota› Tectiliviricetes› Kalamavirales› Tectiviridae› Betatectivirus› Bacillus_phage_AP50

TaxID: 2880538

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 8-85
PDB
Domain cluster: representative
CATH (14)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3vayA02 1.20.120.1600 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › 0.73 41.0 4.01e-01 74.4% 50.6%
5haxA01 1.20.58.1780 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.65 50.0 3.54e-01 83.3% 41.2%
2wesA00 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.61 47.0 2.90e-01 83.3% 49.0%
7vtgA01 3.40.1190.20 Alpha Beta › 3-Layer(aba) Sandwich › UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase › Ribokinase 0.59 51.0 3.44e-01 96.2% 91.2%
3mbhA00 3.40.1190.20 Alpha Beta › 3-Layer(aba) Sandwich › UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase › Ribokinase 0.57 51.0 3.43e-01 97.4% 81.7%
4jndA01 1.10.1740.220 Mainly Alpha › Orthogonal Bundle › Rna Polymerase Sigma Factor; Chain: A › 0.57 47.0 3.90e-01 87.2% 64.6%
4jkzA00 1.10.357.10 Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2 0.56 50.0 3.83e-01 100.0% 93.3%
2abqA00 3.40.1190.20 Alpha Beta › 3-Layer(aba) Sandwich › UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase › Ribokinase 0.56 48.0 3.20e-01 93.6% 93.4%
3i1aA03 1.20.58.840 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.55 40.0 3.55e-01 78.2% 87.9%
1sgmA00 1.10.357.10 Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2 0.54 47.0 3.65e-01 100.0% 85.3%
7abaA01 1.10.630.10 Mainly Alpha › Orthogonal Bundle › Cytochrome p450 › Cytochrome P450 0.53 45.0 2.96e-01 97.4% 54.7%
3n98A01 3.20.110.10 Alpha Beta › Alpha-Beta Barrel › 7-stranded beta/alpha barrel › Glycoside hydrolase 38, N terminal domain 0.52 47.0 2.95e-01 98.7% 67.8%
4fzlA01 1.10.150.790 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › 0.52 39.0 3.79e-01 79.5% 71.3%
2ddmB00 3.40.1190.20 Alpha Beta › 3-Layer(aba) Sandwich › UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase › Ribokinase 0.52 38.0 2.62e-01 78.2% 36.5%
ECOD (12)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3691749 2487.1.1.8 ↗ a/b three-layered sandwiches › "The ""swivelling"" beta/beta/alpha domains" › "The ""swivelling"" beta/beta/alpha domain" › "The ""swivelling"" beta/beta/alpha domain" › RraA-like 0.70 55.0 3.92e-01 84.6% 100.0%
4663888 5069.1.3.126 ↗ alpha bundles › Transmembrane heme-binding four-helical bundle › Transmembrane heme-binding four-helical bundle › Fumarate reductase respiratory complex transmembrane subunits › PLDc_N 0.69 54.0 5.38e-01 83.3% 85.0%
4956867 7064.1.1.0 ↗ alpha bundles › Transmembrane domain of VIT1 › Transmembrane domain of VIT1 › Transmembrane domain of VIT1 0.67 55.0 4.52e-01 88.5% 70.0%
4932779 5054.1.1.0 ↗ alpha complex topology › Voltage-gated ion channels › Voltage-gated ion channels › Voltage-gated ion channels 0.63 52.0 4.86e-01 100.0% 71.6%
3810884 621.1.1.3 ↗ alpha bundles › Interferon-induced guanylate-binding protein 1 (GBP1), C-terminal domain › Interferon-induced guanylate-binding protein 1 (GBP1), C-terminal domain › Interferon-induced guanylate-binding protein 1 (GBP1), C-terminal domain › Sey1_3HB 0.62 39.0 3.13e-01 82.1% 33.1%
3274209 7064.1.1.1 ↗ alpha bundles › Transmembrane domain of VIT1 › Transmembrane domain of VIT1 › Transmembrane domain of VIT1 › VIT1 0.62 51.0 3.96e-01 88.5% 66.7%
5072014 101.1.11.0 ↗ alpha arrays › HTH › HTH › Ribbon-helix-helix 0.60 42.0 4.27e-01 84.6% 74.7%
3958441 191.1.1.0 ↗ alpha bundles › Tetracyclin repressor-like, C-terminal domain › Tetracyclin repressor-like, C-terminal domain › Tetracyclin repressor-like, C-terminal domain 0.58 48.0 4.07e-01 88.5% 98.4%
3291550 191.1.1.49 ↗ alpha bundles › Tetracyclin repressor-like, C-terminal domain › Tetracyclin repressor-like, C-terminal domain › Tetracyclin repressor-like, C-terminal domain › TetR_C_13_2 0.58 52.0 4.25e-01 100.0% 95.2%
1208317 142.1.1.3 ↗ alpha complex topology › Sigma2 domain-like › Sigma2 domain of RNA polymerase sigma factors › Sigma2 domain of RNA polymerase sigma factors › Sigma70_r2 0.55 47.0 4.13e-01 92.3% 79.6%
3278996 101.1.1.0 ↗ alpha arrays › HTH › HTH › Three-helical HTH 0.52 44.0 4.04e-01 91.0% 79.0%
3115 4199.1.1.1 ↗ alpha arrays › PG0816-like › PG0816-like › PG0816-like › DUF1896 0.51 39.0 3.34e-01 89.7% 82.6%
D2 high residues 87-224
PDB
Domain cluster: rep: OQ921348.1__WIT28227.1__X__00119__D5-137
CATH (23)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
4lowA00 3.30.1360.20 Alpha Beta › 2-Layer Sandwich › Gyrase A; domain 2 › Transcriptional coactivator/pterin dehydratase 0.60 33.0 4.03e-01 78.3% 85.7%
4qbuA03 3.30.70.250 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Malonyl-CoA ACP transacylase, ACP-binding 0.59 30.0 4.09e-01 84.8% 98.5%
1qysA00 3.30.1710.10 Alpha Beta › 2-Layer Sandwich › top7, de novo designed protein › top7, de novo designed protein 0.59 32.0 3.76e-01 100.0% 76.1%
2fgcA03 3.30.70.1150 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › ACT-like. Chain A, domain 2 0.58 29.0 3.76e-01 92.8% 85.5%
1rzmA01 3.30.70.1140 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Phospho-2-dehydro-3-deoxyheptonate aldolase; domain 1 0.57 30.0 3.76e-01 87.7% 86.3%
6k2eA01 3.30.70.240 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.57 29.0 3.80e-01 89.1% 95.6%
6u9hF02 3.30.70.1150 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › ACT-like. Chain A, domain 2 0.56 29.0 3.92e-01 89.9% 93.5%
2dt9A02 3.30.70.260 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › ACT domain 0.55 32.0 3.99e-01 88.4% 100.0%
4f67A01 3.30.70.100 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.55 32.0 3.52e-01 90.6% 71.7%
2ca9A02 3.30.70.1150 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › ACT-like. Chain A, domain 2 0.55 33.0 3.89e-01 91.3% 91.0%
3tzyA02 3.30.70.250 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Malonyl-CoA ACP transacylase, ACP-binding 0.54 26.0 3.63e-01 89.9% 91.4%
1q5yC00 3.30.70.1150 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › ACT-like. Chain A, domain 2 0.54 32.0 3.94e-01 89.9% 98.8%
2kviA00 3.30.70.330 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › RRM (RNA recognition motif) domain 0.53 30.0 3.78e-01 89.9% 97.4%
3mgjA00 3.30.70.2690 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › LOR/SDH bifunctional enzyme, conserved domain 0.52 34.0 3.94e-01 90.6% 93.8%
1lfpA03 3.30.70.980 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › YebC, transcriptional regulation domain 0.52 28.0 3.60e-01 88.4% 95.9%
1y71A00 2.30.30.430 Mainly Beta › Roll › SH3 type barrels. › Kinase associated protein B domain 0.52 36.0 3.95e-01 97.8% 88.1%
3luyA03 3.30.70.260 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › ACT domain 0.52 32.0 3.73e-01 89.1% 93.3%
2i8eA01 3.30.70.240 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.51 29.0 3.66e-01 87.7% 98.6%
1yrxC01 3.30.70.100 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.51 31.0 3.48e-01 90.6% 77.9%
2rrnA01 3.30.70.2040 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.51 31.0 3.77e-01 88.4% 98.8%
4yhxA01 3.10.28.10 Alpha Beta › Roll › Endonuclease I-creI › Homing endonucleases 0.51 35.0 3.48e-01 94.9% 68.1%
1yqhA00 3.30.70.930 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.51 30.0 3.40e-01 90.6% 76.9%
1q8bA00 3.30.70.100 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.50 33.0 3.84e-01 89.9% 96.8%
ECOD (25)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4642338 807.1.1.1 ↗ a+b two layers › Allophycocyanin linker chain (domain) › Allophycocyanin linker chain (domain) › Allophycocyanin linker chain (domain) › CpcD 0.76 29.0 4.96e-01 88.4% 98.1%
4388157 304.117.1.1 ↗ a+b two layers › Alpha-beta plaits › Ferredoxin-like domain in YebC › Ferredoxin-like domain in YebC › Transcrip_reg 0.64 32.0 4.38e-01 87.7% 100.0%
4958786 304.3.1.0 ↗ a+b two layers › Alpha-beta plaits › HMA-related › HMA, heavy metal-associated domain 0.60 26.0 3.58e-01 100.0% 81.5%
4357399 304.117.1.1 ↗ a+b two layers › Alpha-beta plaits › Ferredoxin-like domain in YebC › Ferredoxin-like domain in YebC › Transcrip_reg 0.59 32.0 4.10e-01 88.4% 98.6%
3596120 109.4.1.0 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.59 43.0 3.70e-01 87.7% 48.4%
4949784 304.3.1.0 ↗ a+b two layers › Alpha-beta plaits › HMA-related › HMA, heavy metal-associated domain 0.58 25.0 3.41e-01 100.0% 80.0%
3406372 109.4.1.1255 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › Adaptin_N, Cnd1 0.57 39.0 3.42e-01 87.7% 46.8%
4299576 304.8.1.7 ↗ a+b two layers › Alpha-beta plaits › ACT-like › ACT-like › ALS_ss_C 0.55 29.0 3.75e-01 89.9% 86.7%
302769 304.8.1.4 ↗ a+b two layers › Alpha-beta plaits › ACT-like › ACT-like › NikR_C 0.54 33.0 3.77e-01 89.9% 85.3%
4981661 304.57.1.0 ↗ a+b two layers › Alpha-beta plaits › Rpp14/Pop5-like › Rpp14/Pop5-like 0.53 33.0 4.10e-01 79.7% 100.0%
3337459 109.4.1.1310 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › TPR_TRIP12_N 0.52 37.0 2.92e-01 89.1% 32.9%
3274316 109.4.1.509 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › RRP12_HEAT 0.52 41.0 3.34e-01 87.0% 46.0%
4248681 109.4.1.0 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.52 36.0 3.21e-01 87.7% 48.0%
3175271 109.4.1.901 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › HEAT_GCN1 0.51 38.0 3.74e-01 90.6% 69.7%
3037399 304.51.1.5 ↗ a+b two layers › Alpha-beta plaits › CRISPR transcript (pre-crRNA) processing endoribonuclease-related › CRISPR transcript (pre-crRNA) processing endoribonuclease-related › Cas_Csy4 0.51 32.0 3.81e-01 89.1% 97.7%
3599569 327.11.2.0 ↗ a+b two layers › Alpha-lytic protease prodomain-like › KH-domains › Eukaryotic type KH-domain (KH-domain type I) 0.51 28.0 3.25e-01 74.6% 73.0%
3795513 109.4.1.901 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › HEAT_GCN1 0.51 37.0 3.97e-01 89.9% 86.7%
3929468 109.4.1.0 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.51 42.0 3.74e-01 87.7% 62.1%
5050437 304.4.1.0 ↗ a+b two layers › Alpha-beta plaits › Dimeric alpha+beta barrel › Dimeric alpha+beta barrel 0.51 27.0 3.47e-01 85.5% 100.0%
3579508 109.4.1.0 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.51 43.0 3.51e-01 92.0% 52.5%
5051481 304.4.1.0 ↗ a+b two layers › Alpha-beta plaits › Dimeric alpha+beta barrel › Dimeric alpha+beta barrel 0.50 32.0 3.68e-01 89.9% 90.5%
4970834 327.11.2.13 ↗ a+b two layers › Alpha-lytic protease prodomain-like › KH-domains › Eukaryotic type KH-domain (KH-domain type I) › KH_PNO1_2nd 0.50 29.0 3.30e-01 74.6% 76.0%
3642331 109.4.1.1370 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › HEAT, XMAP215_CLASP_TOG 0.50 38.0 3.88e-01 89.9% 81.5%
3217071 109.4.1.901 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › HEAT_GCN1 0.50 37.0 4.13e-01 87.0% 97.3%
3727207 109.4.1.1242 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › HEAT_RRP12_N 0.50 41.0 3.31e-01 87.7% 48.1%