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EU409559.1__ACB72562.1__X__00020

Bact-Vir

EU409559.1__ACB72562.1__X__00020

Identity

Accession:
EU409559 ↗
Kingdom:
phage

Quality

73.6 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Lactobacillus_phage_JCL1032

TaxID: 37105

Cluster

Singleton — not in a non-trivial cluster

3D Structure

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Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 53-144
PDB
Domain cluster: rep: OQ632216.1__WGL32639.1__Arash_gp188__00188__D185-268
CATH (48)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1y8cA02 2.20.25.110 Mainly Beta › Single Sheet › N-terminal domain of TfIIb › S-adenosyl-L-methionine-dependent methyltransferases 0.66 37.0 4.51e-01 73.9% 85.0%
3d4eA01 3.30.1450.10 Alpha Beta › 2-Layer Sandwich › Beta-lactamase Inhibitory Protein; Chain:B, domain 1 › 0.64 36.0 3.83e-01 87.0% 61.9%
1u7bA00 3.70.10.10 Alpha Beta › Box › Proliferating Cell Nuclear Antigen › 0.64 44.0 3.20e-01 71.7% 48.6%
3bxoA02 2.20.130.10 Mainly Beta › Single Sheet › S-adenosyl-L-methionine-dependent methyltransferases › CAC2371-like domains 0.63 39.0 4.79e-01 72.8% 98.3%
3t0pA02 3.10.150.10 Alpha Beta › Roll › DNA Polymerase III; Chain A, domain 2 › DNA Polymerase III, subunit A, domain 2 0.63 43.0 3.34e-01 70.7% 58.0%
5t5lA00 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.62 52.0 3.90e-01 91.3% 81.7%
2o62A01 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.62 42.0 3.72e-01 79.3% 48.9%
1ealA00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.62 47.0 4.23e-01 80.4% 58.3%
1wz9A02 2.30.39.10 Mainly Beta › Roll › Alpha-1-antitrypsin; domain 1 › Alpha-1-antitrypsin, domain 1 0.61 46.0 3.94e-01 79.3% 73.9%
3zhaQ02 2.30.39.10 Mainly Beta › Roll › Alpha-1-antitrypsin; domain 1 › Alpha-1-antitrypsin, domain 1 0.61 47.0 4.09e-01 80.4% 72.5%
1ux6A02 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.60 50.0 3.89e-01 91.3% 86.1%
3stoA02 2.30.39.10 Mainly Beta › Roll › Alpha-1-antitrypsin; domain 1 › Alpha-1-antitrypsin, domain 1 0.60 45.0 3.83e-01 79.3% 74.0%
1ohfA03 2.60.270.70 Mainly Beta › Sandwich › Mutm (Fpg) Protein; Chain: A, domain 2 › 0.60 52.0 4.52e-01 96.7% 70.2%
2af5A02 3.90.930.1 Alpha Beta › Alpha-Beta Complex › Outer Surface Protein A; domain 3 › 0.59 42.0 3.66e-01 100.0% 49.3%
3k1lA02 3.30.457.30 Alpha Beta › 2-Layer Sandwich › Copper Amine Oxidase; Chain A, domain 1 › 0.59 35.0 3.53e-01 85.9% 57.8%
4exrA02 3.10.450.40 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.59 37.0 4.14e-01 85.9% 81.7%
3uaqB02 2.40.160.90 Mainly Beta › Beta Barrel › Porin › 0.58 44.0 3.67e-01 81.5% 67.5%
4exrA01 3.10.450.40 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.58 37.0 3.95e-01 87.0% 74.1%
3sc7X01 2.115.10.20 Mainly Beta › 5 Propeller › Tachylectin-2; Chain A › Glycosyl hydrolase domain; family 43 0.57 50.0 3.48e-01 100.0% 51.5%
4jocA00 3.40.50.1240 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Phosphoglycerate mutase-like 0.57 48.0 3.30e-01 96.7% 65.7%
2lfuA02 2.40.160.90 Mainly Beta › Beta Barrel › Porin › 0.56 42.0 3.78e-01 79.3% 66.7%
2bs6A01 2.40.128.190 Mainly Beta › Beta Barrel › Lipocalin › 0.56 46.0 4.83e-01 97.8% 97.6%
3tc9A02 2.120.10.30 Mainly Beta › 6 Propeller › Neuraminidase › TolB, C-terminal domain 0.56 49.0 3.45e-01 100.0% 72.4%
2durB01 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.56 46.0 3.53e-01 92.4% 92.6%
3dgtA00 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.56 46.0 3.38e-01 93.5% 78.4%
5gm0A01 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.55 45.0 3.89e-01 89.1% 80.4%
4g59C02 3.30.500.30 Alpha Beta › 2-Layer Sandwich › Murine Class I Major Histocompatibility Complex, H2-DB; Chain A, domain 1 › 0.55 42.0 3.52e-01 80.4% 69.0%
1e2rA02 2.140.10.20 Mainly Beta › 8 Propeller › Methanol Dehydrogenase; Chain A › C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase 0.55 48.0 3.17e-01 100.0% 36.3%
3qkgA00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.55 43.0 3.54e-01 82.6% 53.0%
2yfoA01 2.70.98.60 Mainly Beta › Distorted Sandwich › Beta-galactosidase; Chain A, domain 5 › alpha-galactosidase from lactobacil brevis 0.55 50.0 3.45e-01 100.0% 94.5%
4r03A00 2.40.128.720 Mainly Beta › Beta Barrel › Lipocalin › 0.55 48.0 4.49e-01 98.9% 78.9%
2a0aA00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.55 45.0 3.98e-01 88.0% 61.8%
5ay6A01 2.60.98.20 Mainly Beta › Sandwich › Tick-borne Encephalitis virus Glycoprotein; domain 1 › Flagellar hook protein FlgE 0.55 46.0 3.76e-01 92.4% 77.2%
4o9dA00 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.54 47.0 3.16e-01 100.0% 36.3%
4qqsB00 2.115.10.20 Mainly Beta › 5 Propeller › Tachylectin-2; Chain A › Glycosyl hydrolase domain; family 43 0.54 48.0 3.33e-01 100.0% 38.3%
1s1dA00 2.120.10.100 Mainly Beta › 6 Propeller › Neuraminidase › Apyrase 0.54 46.0 3.28e-01 100.0% 53.0%
1yr2A02 2.130.10.120 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › Prolyl oligopeptidase, N-terminal domain 0.53 46.0 3.23e-01 100.0% 42.9%
3vv1A00 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.53 44.0 3.86e-01 92.4% 78.7%
3ni8A00 3.30.530.20 Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain 0.52 42.0 3.67e-01 100.0% 57.9%
1xfdA01 2.140.10.30 Mainly Beta › 8 Propeller › Methanol Dehydrogenase; Chain A › Dipeptidylpeptidase IV, N-terminal domain 0.52 46.0 2.95e-01 100.0% 29.1%
4bbwA02 2.120.10.10 Mainly Beta › 6 Propeller › Neuraminidase › 0.52 45.0 3.11e-01 100.0% 46.8%
1z94B00 3.30.530.20 Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain 0.52 45.0 3.95e-01 97.8% 65.0%
5c2vB00 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.52 45.0 3.09e-01 100.0% 36.4%
2ecfA01 2.140.10.30 Mainly Beta › 8 Propeller › Methanol Dehydrogenase; Chain A › Dipeptidylpeptidase IV, N-terminal domain 0.52 45.0 2.94e-01 100.0% 39.5%
1qmoE01 2.60.40.4220 Mainly Beta › Sandwich › Immunoglobulin-like › 0.51 38.0 3.98e-01 77.2% 90.5%
2jozA01 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.50 35.0 3.53e-01 89.1% 70.8%
1gpqB00 3.40.1420.10 Alpha Beta › 3-Layer(aba) Sandwich › Inhibitor of vertebrate lysozyme, Ivy › Inhibitor of vertebrate lysozyme 0.50 46.0 4.09e-01 100.0% 76.6%
1e5tA02 2.130.10.120 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › Prolyl oligopeptidase, N-terminal domain 0.50 43.0 2.93e-01 96.7% 32.6%
ECOD (53)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3967853 243.19.1.0 ↗ a+b two layers › Cystatin-like › Phi ETA orf 56-like protein C-terminal domains › Phi ETA orf 56-like protein C-terminal domains 0.85 70.0 6.44e-01 100.0% 69.6%
4100839 12.1.1.0 ↗ beta sandwiches › Glycosyl hydrolase domain-like › Glycosyl hydrolase domain › Glycosyl hydrolase domain 0.82 43.0 5.82e-01 80.4% 96.0%
3988645 12.1.1.0 ↗ beta sandwiches › Glycosyl hydrolase domain-like › Glycosyl hydrolase domain › Glycosyl hydrolase domain 0.82 41.0 5.73e-01 78.3% 100.0%
4033339 520.1.1.2 ↗ beta sandwiches › gp9 N-terminal domain-like › gp9 N-terminal domain-related › gp9 N-terminal domain-related › PF27308 0.80 63.0 6.59e-01 97.8% 89.4%
4033743 243.19.1.0 ↗ a+b two layers › Cystatin-like › Phi ETA orf 56-like protein C-terminal domains › Phi ETA orf 56-like protein C-terminal domains 0.78 62.0 6.47e-01 98.9% 90.6%
4221174 243.19.1.0 ↗ a+b two layers › Cystatin-like › Phi ETA orf 56-like protein C-terminal domains › Phi ETA orf 56-like protein C-terminal domains 0.78 69.0 6.83e-01 100.0% 90.5%
4031359 243.19.1.0 ↗ a+b two layers › Cystatin-like › Phi ETA orf 56-like protein C-terminal domains › Phi ETA orf 56-like protein C-terminal domains 0.78 62.0 6.47e-01 100.0% 91.8%
3974671 243.19.1.0 ↗ a+b two layers › Cystatin-like › Phi ETA orf 56-like protein C-terminal domains › Phi ETA orf 56-like protein C-terminal domains 0.77 63.0 6.59e-01 100.0% 94.1%
4954308 210.1.1.5 ↗ a+b four layers › Ntn/PP2C › Ntn › Proteasome subunits › DUF2121 0.73 41.0 3.06e-01 80.4% 23.7%
3596085 12.1.1.0 ↗ beta sandwiches › Glycosyl hydrolase domain-like › Glycosyl hydrolase domain › Glycosyl hydrolase domain 0.71 39.0 4.14e-01 79.3% 61.3%
3259296 71.1.1.0 ↗ beta meanders › Lipoprotein localization factors LolAB › Lipoprotein localization factors LolAB › Lipoprotein localization factors LolAB 0.70 46.0 3.88e-01 81.5% 41.3%
3225336 9.1.1.0 ↗ beta barrels › Lipocalins/Streptavidin › Lipocalins › Lipocalins 0.69 44.0 3.78e-01 90.2% 41.4%
4946504 243.3.1.0 ↗ a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin 0.67 46.0 5.24e-01 85.9% 94.3%
4963006 4.1.1.490 ↗ beta barrels › SH3 › SH3 › SH3 › PF26269 0.66 46.0 4.75e-01 87.0% 78.8%
4934001 227.1.1.1 ↗ a+b two layers › DNA clamp › DNA clamp › DNA clamp › PCNA_N 0.65 46.0 4.10e-01 72.8% 98.4%
5036065 243.3.1.0 ↗ a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin 0.64 47.0 5.13e-01 85.9% 94.7%
3935387 5.1.2.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 5-bladed 0.63 46.0 3.42e-01 97.8% 30.0%
3265841 216.1.1.20 ↗ a+b two layers › UBC-like › UBC-like › UBC-like › UBC_like 0.62 38.0 3.69e-01 100.0% 56.0%
853 9.1.1.23 ↗ beta barrels › Lipocalins/Streptavidin › Lipocalins › Lipocalins › DUF3598_N 0.62 42.0 3.71e-01 79.3% 48.5%
3231010 10.1.1.0 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases 0.61 48.0 4.06e-01 85.9% 82.6%
3690594 207.1.1.0 ↗ beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats 0.60 55.0 3.37e-01 100.0% 18.3%
4927376 5.1.4.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.59 53.0 3.62e-01 100.0% 60.3%
3291499 9.1.1.0 ↗ beta barrels › Lipocalins/Streptavidin › Lipocalins › Lipocalins 0.58 46.0 3.89e-01 83.7% 52.0%
4996016 4237.1.1.1 ↗ beta barrels › FomD-like › FomD-like › FomD-like › DUF402 0.58 52.0 4.35e-01 100.0% 73.1%
4356530 4237.1.1.1 ↗ beta barrels › FomD-like › FomD-like › FomD-like › DUF402 0.58 52.0 4.14e-01 100.0% 58.9%
4978599 5.1.3.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed 0.58 52.0 3.41e-01 100.0% 24.7%
4962518 4237.1.1.1 ↗ beta barrels › FomD-like › FomD-like › FomD-like › DUF402 0.57 52.0 4.25e-01 100.0% 65.5%
3813307 5.1.3.67 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › FBA_1 0.57 48.0 3.24e-01 92.4% 34.6%
3608279 9.1.1.0 ↗ beta barrels › Lipocalins/Streptavidin › Lipocalins › Lipocalins 0.57 40.0 3.86e-01 82.6% 63.8%
3930756 5.1.4.48 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › BBS1 0.57 52.0 3.39e-01 100.0% 63.0%
3928508 5.1.3.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed 0.57 51.0 3.45e-01 100.0% 43.4%
3922884 5.1.4.271 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40, PF30361 0.57 51.0 3.41e-01 100.0% 51.4%
3947082 243.3.1.0 ↗ a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin 0.57 40.0 4.08e-01 100.0% 75.6%
3576373 5.1.4.1 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40 0.55 49.0 3.24e-01 100.0% 35.7%
3988729 4097.1.1.0 ↗ a+b two layers › Lp2179-like › Lp2179-like › Lp2179-like 0.54 39.0 3.88e-01 78.3% 71.6%
3479716 3459.1.1.0 ↗ beta sandwiches › Fas apoptotic inhibitory molecule › Fas apoptotic inhibitory molecule › Fas apoptotic inhibitory molecule 0.54 41.0 4.28e-01 85.9% 87.1%
3418470 5.1.3.54 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › DUF1668 0.54 47.0 3.26e-01 97.8% 52.0%
4613622 5.1.4.14 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Peptidase_S9_N 0.53 47.0 3.19e-01 100.0% 27.0%
3283094 331.3.1.9 ↗ a+b two layers › TBP-like › Bet v1-like › Bet v1-like › AHSA1 0.53 39.0 3.11e-01 97.8% 36.9%
3602888 10.1.1.21 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases › 3keto-disac_hyd 0.53 44.0 3.58e-01 92.4% 82.6%
3616631 5.1.4.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.53 47.0 3.02e-01 100.0% 52.5%
136506 4075.1.1.2 ↗ a+b complex topology › RGC domain › RGC domain › RGC domain › PF29130 0.52 39.0 3.83e-01 79.3% 80.8%
3915503 5.1.4.1 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40 0.52 46.0 3.18e-01 100.0% 37.9%
3630050 331.3.1.9 ↗ a+b two layers › TBP-like › Bet v1-like › Bet v1-like › AHSA1 0.52 39.0 3.39e-01 97.8% 49.7%
3932316 331.3.1.9 ↗ a+b two layers › TBP-like › Bet v1-like › Bet v1-like › AHSA1 0.51 40.0 3.61e-01 97.8% 60.0%
5047218 331.3.1.9 ↗ a+b two layers › TBP-like › Bet v1-like › Bet v1-like › AHSA1 0.51 41.0 3.68e-01 97.8% 60.7%
5009130 2004.1.1.198 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › AAA_23 0.51 39.0 2.63e-01 81.5% 30.4%
4400687 2004.1.1.782 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › SMC_N, AAA_23, AAA_29, SbcC_Walker_B 0.51 39.0 2.50e-01 81.5% 23.9%
4995431 5.1.4.14 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Peptidase_S9_N 0.51 46.0 3.05e-01 100.0% 26.5%
5052550 227.1.1.1 ↗ a+b two layers › DNA clamp › DNA clamp › DNA clamp › PCNA_N 0.51 42.0 3.84e-01 91.3% 91.2%
3724553 331.3.1.9 ↗ a+b two layers › TBP-like › Bet v1-like › Bet v1-like › AHSA1 0.50 40.0 3.44e-01 97.8% 52.3%
2080638 5.1.4.14 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Peptidase_S9_N 0.50 43.0 2.90e-01 100.0% 34.2%
4012990 241.15.1.2 ↗ a+b two layers › Type III secretory system chaperone-like › FP (Fbxo7/PI31) dimerization domain › FP (Fbxo7/PI31) dimerization domain › PI31_Prot_N 0.50 44.0 3.57e-01 98.9% 70.4%
D2 high residues 389-473
PDB
Domain cluster: rep: LC785692.1__BEU14643.1__X__00064__D439-516
D3 medium residues 178-282
PDB
Domain cluster: rep: EF455602.1__AAC00551.1__X__00026__D354-455