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EU409559.1__ACB72565.1__X__00023

Bact-Vir

EU409559.1__ACB72565.1__X__00023

Identity

Accession:
EU409559 ↗
Kingdom:
phage

Quality

87.5 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Lactobacillus_phage_JCL1032

TaxID: 37105

Cluster

View cluster (2 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 2-109
PDB
Domain cluster: rep: IMGVR_UViG_3300018013_000490-3300018013-Ga0187873_100144020__D355-451
D2 medium residues 145-193
PDB
Domain cluster: rep: SRR1747021_scaffold_144_prodigal-single.1__X__X__00017__D146-206
CATH (31)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
4d10F01 3.40.140.10 Alpha Beta › 3-Layer(aba) Sandwich › Cytidine Deaminase; domain 2 › Cytidine Deaminase, domain 2 0.69 57.0 4.00e-01 100.0% 65.4%
1dl5A01 3.40.50.150 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 0.68 59.0 3.94e-01 100.0% 64.7%
4epsA01 2.60.40.2620 Mainly Beta › Sandwich › Immunoglobulin-like › Fimbrillin-like 0.68 51.0 3.81e-01 81.6% 45.3%
2gbsA00 3.10.590.10 Alpha Beta › Roll › ph1033 like fold › ph1033 like domains 0.68 59.0 4.23e-01 100.0% 62.1%
1vbfA00 3.40.50.150 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 0.66 55.0 3.67e-01 100.0% 54.9%
3s9xA00 3.10.400.10 Alpha Beta › Roll › Sulfate adenylyltransferase › Sulfate adenylyltransferase 0.65 57.0 4.00e-01 100.0% 80.5%
4ms4B02 3.40.50.2300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator 0.63 56.0 3.80e-01 100.0% 28.9%
3vthA04 3.30.420.40 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain 0.63 48.0 3.12e-01 87.8% 21.3%
2pbfA00 3.40.50.150 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 0.61 50.0 3.40e-01 100.0% 23.4%
3wknF00 6.20.50.120 Special › Other non-globular › N-terminal domain of TfIIb › 0.60 42.0 4.38e-01 75.5% 93.5%
3n7zB03 3.30.1050.10 Alpha Beta › 2-Layer Sandwich › Nonspecific Lipid-transfer Protein; Chain A › SCP2 sterol-binding domain 0.60 45.0 3.84e-01 89.8% 50.5%
3lkbA02 3.40.50.2300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator 0.60 52.0 3.63e-01 100.0% 87.4%
3u50C01 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.59 51.0 3.82e-01 100.0% 96.9%
3vtiA06 3.30.420.560 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › 0.58 43.0 3.52e-01 85.7% 48.6%
3q0xA01 2.170.210.20 Mainly Beta › Beta Complex › Dna Repair Protein Xrcc4; Chain: A, domain 1 › Spindle assembly abnormal protein 6, N-terminal domain 0.58 49.0 3.50e-01 100.0% 80.0%
3pieC09 2.30.30.750 Mainly Beta › Roll › SH3 type barrels. › 0.57 45.0 3.66e-01 89.8% 55.6%
3p54A02 3.30.67.10 Alpha Beta › 2-Layer Sandwich › Viral Envelope Glycoprotein; domain 2 › Viral Envelope Glycoprotein, domain 2 0.56 43.0 3.86e-01 95.9% 59.2%
1nrkA02 3.30.70.1400 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Aminomethyltransferase beta-barrel domains 0.56 41.0 3.56e-01 85.7% 54.0%
4hg1A00 3.40.1580.30 Alpha Beta › 3-Layer(aba) Sandwich › SMI1/KNR4-like › Domain of unknown function (DUF5066) 0.56 45.0 2.95e-01 91.8% 56.8%
3bijB00 3.40.50.1460 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 0.56 40.0 2.62e-01 79.6% 61.5%
3bfmA02 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.55 38.0 3.94e-01 100.0% 83.7%
3bgvD00 3.40.50.150 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 0.55 46.0 2.94e-01 100.0% 74.6%
3ghgB02 3.90.215.10 Alpha Beta › Alpha-Beta Complex › Gamma Fibrinogen; Chain A, domain 1 › Gamma Fibrinogen, chain A, domain 1 0.55 42.0 2.81e-01 100.0% 35.5%
2lezA00 3.30.2450.10 Alpha Beta › 2-Layer Sandwich › Secreted effector protein pipB2 fold › Secreted effector protein pipB2 0.54 39.0 3.06e-01 100.0% 33.3%
1sjiA01 3.40.30.10 Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Glutaredoxin 0.53 44.0 3.43e-01 100.0% 75.8%
6ijfC01 3.90.1720.80 Alpha Beta › Alpha-Beta Complex › endopeptidase fold (from Nostoc punctiforme) › 0.53 42.0 3.63e-01 100.0% 55.9%
3zq4A01 3.60.15.10 Alpha Beta › 4-Layer Sandwich › Metallo-beta-lactamase; Chain A › Ribonuclease Z/Hydroxyacylglutathione hydrolase-like 0.53 43.0 2.75e-01 100.0% 25.7%
8db3B02 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.52 37.0 2.55e-01 79.6% 96.2%
1m1cA00 3.90.1840.10 Alpha Beta › Alpha-Beta Complex › Major capsid protein › Major capsid protein 0.51 40.0 2.32e-01 100.0% 100.0%
4udqA02 3.30.410.40 Alpha Beta › 2-Layer Sandwich › Cholesterol Oxidase; domain 2 › 0.51 36.0 2.58e-01 77.6% 56.7%
3payB02 2.60.40.2090 Mainly Beta › Sandwich › Immunoglobulin-like › 0.51 44.0 3.28e-01 100.0% 93.9%
ECOD (43)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
5038529 284.4.1.0 ↗ a+b two layers › FKBP-like › Archaeal FKBP insertion domain › Archaeal FKBP insertion domain 0.69 52.0 4.78e-01 81.6% 72.3%
4961858 1.1.9.3 ↗ beta barrels › cradle loop barrel › RIFT-related › PUA domain › EVE 0.69 60.0 4.28e-01 100.0% 62.0%
3991271 1.1.9.33 ↗ beta barrels › cradle loop barrel › RIFT-related › PUA domain › PUA_NSUN2 0.68 56.0 4.89e-01 98.0% 88.7%
5079388 7502.1.1.0 ↗ a/b three-layered sandwiches › Anticodon-binding domain of Class II aaRS › Anticodon-binding domain of Class II aaRS › Anticodon-binding domain of Class II aaRS 0.67 57.0 3.89e-01 100.0% 43.2%
5040467 2003.1.5.4 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › PCMT 0.67 55.0 3.63e-01 100.0% 49.8%
4558844 1.1.9.0 ↗ beta barrels › cradle loop barrel › RIFT-related › PUA domain 0.66 57.0 5.29e-01 100.0% 95.4%
9357 2003.1.5.4 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › PCMT 0.66 55.0 3.67e-01 100.0% 54.9%
3385678 2003.1.5.4 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › PCMT 0.66 55.0 3.73e-01 100.0% 61.3%
3964956 2003.1.5.153 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › PCMT, Methyltransf_25 0.66 55.0 3.69e-01 100.0% 58.2%
None — 0.65 54.0 3.61e-01 100.0% 57.7%
4995643 1.1.9.9 ↗ beta barrels › cradle loop barrel › RIFT-related › PUA domain › ASCH 0.65 55.0 4.01e-01 100.0% 69.0%
5074348 2492.1.1.18 ↗ a+b three layers › Cytidine deaminase-like › Cytidine deaminase-like › Cytidine deaminase-like › Prok-JAB 0.65 54.0 4.03e-01 100.0% 38.6%
3938083 214.1.1.1 ↗ a+b two layers › SH2 › SH2 › SH2 › SH2 0.65 54.0 4.46e-01 100.0% 51.6%
4977613 2492.1.1.18 ↗ a+b three layers › Cytidine deaminase-like › Cytidine deaminase-like › Cytidine deaminase-like › Prok-JAB 0.64 54.0 4.00e-01 100.0% 38.6%
None — 0.64 53.0 3.54e-01 100.0% 59.6%
5070318 2003.1.5.4 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › PCMT 0.64 52.0 3.55e-01 100.0% 60.0%
None — 0.64 53.0 3.50e-01 100.0% 55.7%
3937854 214.1.1.1 ↗ a+b two layers › SH2 › SH2 › SH2 › SH2 0.64 53.0 4.33e-01 100.0% 49.0%
4646311 2003.1.5.4 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › PCMT 0.63 53.0 3.52e-01 100.0% 56.8%
4030408 2003.1.5.4 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › PCMT 0.63 52.0 3.47e-01 100.0% 63.8%
3993882 4.1.1.103 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_12 0.63 48.0 4.80e-01 81.6% 92.0%
None — 0.63 51.0 3.48e-01 100.0% 58.2%
3560459 391.1.2.0 ↗ few secondary structure elements › Fibronectin type I module-like › Fibronectin type I module-like › VWC domain-related 0.63 46.0 4.73e-01 79.6% 93.3%
4395723 2003.1.5.153 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › PCMT, Methyltransf_25 0.62 51.0 3.46e-01 100.0% 57.7%
3521647 391.1.2.1 ↗ few secondary structure elements › Fibronectin type I module-like › Fibronectin type I module-like › VWC domain-related › VWC 0.61 46.0 4.20e-01 81.6% 61.5%
3579037 214.1.1.1 ↗ a+b two layers › SH2 › SH2 › SH2 › SH2 0.61 50.0 4.11e-01 100.0% 46.7%
3941356 214.1.1.1 ↗ a+b two layers › SH2 › SH2 › SH2 › SH2 0.61 51.0 3.93e-01 100.0% 41.7%
3512824 214.1.1.1 ↗ a+b two layers › SH2 › SH2 › SH2 › SH2 0.59 48.0 3.96e-01 100.0% 49.5%
3619626 214.1.1.1 ↗ a+b two layers › SH2 › SH2 › SH2 › SH2 0.59 49.0 4.08e-01 100.0% 52.6%
3218472 214.1.1.1 ↗ a+b two layers › SH2 › SH2 › SH2 › SH2 0.59 48.0 3.76e-01 100.0% 41.6%
3625308 214.1.1.1 ↗ a+b two layers › SH2 › SH2 › SH2 › SH2 0.57 46.0 3.64e-01 100.0% 40.8%
3217461 2485.1.1.0 ↗ a+b three layers › Thioredoxin-like › Thioredoxin-like › Thioredoxin-like 0.57 46.0 3.95e-01 98.0% 85.6%
3999963 214.1.1.1 ↗ a+b two layers › SH2 › SH2 › SH2 › SH2 0.57 46.0 3.56e-01 100.0% 39.2%
1772519 269.1.1.1 ↗ a+b complex topology › Fibrinogen C-terminal domain-like › Fibrinogen C-terminal domain-like › Fibrinogen C-terminal domain-like › Fibrinogen_C 0.56 45.0 2.98e-01 100.0% 33.5%
2083983 269.1.1.2 ↗ a+b complex topology › Fibrinogen C-terminal domain-like › Fibrinogen C-terminal domain-like › Fibrinogen C-terminal domain-like › Fibrinogen_C,Fib_alpha 0.55 43.0 2.80e-01 100.0% 27.7%
4878386 247.1.1.28 ↗ a+b four layers › Metallo-hydrolase/oxidoreductase › Metallo-hydrolase/oxidoreductase › Metallo-hydrolase/oxidoreductase › RMMBL 0.55 40.0 2.77e-01 100.0% 22.9%
4877030 389.1.2.1 ↗ few secondary structure elements › EGF-like › EGF-related › Complement control module/SCR domain › Sushi 0.55 42.0 4.22e-01 91.8% 84.6%
2084081 269.1.1.1 ↗ a+b complex topology › Fibrinogen C-terminal domain-like › Fibrinogen C-terminal domain-like › Fibrinogen C-terminal domain-like › Fibrinogen_C 0.54 43.0 2.74e-01 100.0% 25.8%
4950866 2.1.1.7 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › S1 0.54 45.0 3.75e-01 98.0% 84.4%
3238323 3535.1.1.0 ↗ a+b two layers › Sex pheromone staph-cAM373 › Sex pheromone staph-cAM373 › Sex pheromone staph-cAM373 0.53 42.0 3.33e-01 98.0% 53.3%
3929586 4184.1.1.0 ↗ beta barrels › MFPT repeat › MFPT repeat › MFPT repeat 0.52 38.0 3.87e-01 81.6% 80.0%
3502916 7512.1.1.0 ↗ a/b three-layered sandwiches › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase 0.51 41.0 3.03e-01 100.0% 96.8%
5007518 2004.1.1.146 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › ATPase 0.50 40.0 2.67e-01 100.0% 67.2%
D3 medium residues 240-313_336-358_379-397
PDB
Domain cluster: representative
ECOD (2)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
5079843 4.8.1.0 ↗ beta barrels › SH3 › Chromo domain-like › Chromo domain-like 0.61 31.0 4.03e-01 78.4% 86.2%
3576647 327.5.1.0 ↗ a+b two layers › Alpha-lytic protease prodomain-like › a+b domain in acetyl-CoA synthetase-like proteins › a+b domain in acetyl-CoA synthetase-like proteins 0.52 32.0 3.74e-01 78.4% 98.6%
D4 medium residues 314-335_359-378_398-474
PDB
Domain cluster: representative
CATH (2)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2eqjA00 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.53 26.0 3.45e-01 85.7% 86.4%
3bdwA00 3.10.100.10 Alpha Beta › Roll › Mannose-Binding Protein A; Chain A › Mannose-Binding Protein A, subunit A 0.51 41.0 4.07e-01 100.0% 82.1%
ECOD (3)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4944414 2003.1.2.300 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain › GGR_cat 0.52 38.0 2.65e-01 76.5% 82.0%
3226269 209.1.1.1 ↗ a+b complex topology › C-type lectin-like › C-type lectin-like › C-type lectin-like › Lectin_C 0.51 44.0 4.25e-01 100.0% 80.7%
3839083 4.1.1.13 ↗ beta barrels › SH3 › SH3 › SH3 › MS_channel_2nd 0.51 29.0 3.57e-01 93.3% 94.3%