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EU409559.1__ACB72567.1__X__00025
Bact-VirEU409559.1__ACB72567.1__X__00025
Identity
- Accession:
- EU409559 ↗
- Kingdom:
- phage
Quality
76.4
mean pLDDT
Cluster
View cluster (3 members)3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 4-41
Domain cluster:
representative
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF09693.16 best | Phage_XkdX | 38.6 | 1.20e-09 | 92.1% | 82.5% |
CATH (13)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2xf5B00 | 1.10.10.1530 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › | 0.93 | 83.0 | 7.53e-01 | 100.0% | 76.0% |
| 6dv2G02 | 3.40.50.720 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain | 0.71 | 58.0 | 3.67e-01 | 89.5% | 25.0% |
| 3msxB00 | 1.10.555.10 | Mainly Alpha › Orthogonal Bundle › Phosphatidylinositol 3-kinase; Chain A › Rho GTPase activation protein | 0.67 | 54.0 | 3.56e-01 | 100.0% | 30.7% |
| 2ld7B00 | 1.20.1160.11 | Mainly Alpha › Up-down Bundle › Paired amphipathic helix 2 (pah2 repeat) › Paired amphipathic helix | 0.67 | 57.0 | 4.59e-01 | 100.0% | 56.0% |
| 3d5lA02 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.66 | 53.0 | 5.19e-01 | 100.0% | 93.3% |
| 3gfaA00 | 3.40.109.10 | Alpha Beta › 3-Layer(aba) Sandwich › NADH Oxidase › NADH Oxidase | 0.65 | 46.0 | 2.90e-01 | 76.3% | 23.0% |
| 2raaA00 | 3.40.920.10 | Alpha Beta › 3-Layer(aba) Sandwich › Pyruvate-ferredoxin Oxidoreductase; domain 3 › Pyruvate-ferredoxin oxidoreductase, PFOR, domain III | 0.64 | 48.0 | 3.31e-01 | 100.0% | 86.5% |
| 1v07A00 | 1.10.490.10 | Mainly Alpha › Orthogonal Bundle › Globin-like › Globins | 0.60 | 48.0 | 3.63e-01 | 100.0% | 51.8% |
| 2feaA02 | 3.90.1470.20 | Alpha Beta › Alpha-Beta Complex › thrh gene product, domain 2 › | 0.59 | 46.0 | 3.54e-01 | 92.1% | 49.0% |
| 4hhxA00 | 1.20.81.30 | Mainly Alpha › Up-down Bundle › Receptor-associated Protein › Type II secretion system (T2SS), domain F | 0.55 | 37.0 | 2.92e-01 | 73.7% | 26.9% |
| 1vquA01 | 1.20.970.10 | Mainly Alpha › Up-down Bundle › Transferase, Pyrimidine Nucleoside Phosphorylase; Chain A, domain 3 › Transferase, Pyrimidine Nucleoside Phosphorylase; Chain C | 0.54 | 42.0 | 3.74e-01 | 100.0% | 62.7% |
| 4muoA01 | 1.20.970.10 | Mainly Alpha › Up-down Bundle › Transferase, Pyrimidine Nucleoside Phosphorylase; Chain A, domain 3 › Transferase, Pyrimidine Nucleoside Phosphorylase; Chain C | 0.53 | 43.0 | 3.64e-01 | 100.0% | 63.9% |
| 1zvwA01 | 1.20.970.10 | Mainly Alpha › Up-down Bundle › Transferase, Pyrimidine Nucleoside Phosphorylase; Chain A, domain 3 › Transferase, Pyrimidine Nucleoside Phosphorylase; Chain C | 0.53 | 43.0 | 3.77e-01 | 100.0% | 65.2% |
ECOD (16)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3588564 | 3151.1.1.2 ↗ | alpha arrays › SPP1 phage GP23.1 › SPP1 phage GP23.1 › SPP1 phage GP23.1 › Phage_XkdX | 0.98 | 88.0 | 8.67e-01 | 97.4% | 92.5% |
| 4032841 | 3151.1.1.2 ↗ | alpha arrays › SPP1 phage GP23.1 › SPP1 phage GP23.1 › SPP1 phage GP23.1 › Phage_XkdX | 0.94 | 86.0 | 8.06e-01 | 100.0% | 84.4% |
| 397561 | 3151.1.1.1 ↗ | alpha arrays › SPP1 phage GP23.1 › SPP1 phage GP23.1 › SPP1 phage GP23.1 › SPP1_GP23-1 | 0.93 | 83.0 | 7.53e-01 | 100.0% | 76.0% |
| 4381851 | 3151.1.1.2 ↗ | alpha arrays › SPP1 phage GP23.1 › SPP1 phage GP23.1 › SPP1 phage GP23.1 › Phage_XkdX | 0.84 | 73.0 | 6.94e-01 | 100.0% | 88.9% |
| 5080494 | 316.2.1.0 ↗ | a+b three layers › Nucleotidyltransferase-like › Rv2827c C-terminal domain-like › Rv2827c C-terminal domain-like | 0.69 | 58.0 | 3.96e-01 | 100.0% | 40.7% |
| 3974625 | 5086.1.1.84 ↗ | alpha bundles › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins › HH_MFP_RND | 0.67 | 46.0 | 3.78e-01 | 86.8% | 40.0% |
| 3730259 | 509.1.1.1 ↗ | alpha bundles › PAH2 domain › PAH2 domain › PAH2 domain › PAH | 0.67 | 56.0 | 4.77e-01 | 100.0% | 64.6% |
| 3280977 | 129.1.1.16 ↗ | alpha arrays › 6-phosphogluconate dehydrogenase C-terminal domain-like › 6-phosphogluconate dehydrogenase C-terminal domain-like › 6-phosphogluconate dehydrogenase C-terminal domain-like › NAD_binding_11 | 0.65 | 48.0 | 3.65e-01 | 100.0% | 33.6% |
| 4167193 | 101.35.1.1 ↗ | alpha arrays › HTH › DNA repair regulatory protein RecX › DNA repair regulatory protein RecX › RecX_HTH2 | 0.62 | 50.0 | 4.83e-01 | 100.0% | 93.3% |
| 3929783 | 109.4.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat | 0.62 | 51.0 | 2.98e-01 | 100.0% | 10.6% |
| 134094 | 304.103.1.1 ↗ | a+b two layers › Alpha-beta plaits › FMN-dependent nitroreductase-like › FMN-dependent nitroreductase-like › Nitroreductase | 0.61 | 43.0 | 2.79e-01 | 78.9% | 15.7% |
| 4077030 | 101.35.1.1 ↗ | alpha arrays › HTH › DNA repair regulatory protein RecX › DNA repair regulatory protein RecX › RecX_HTH2 | 0.60 | 46.0 | 4.56e-01 | 100.0% | 84.4% |
| 5074018 | 109.4.1.207 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › HEAT_2 | 0.57 | 46.0 | 2.84e-01 | 100.0% | 14.6% |
| 4230265 | 2006.1.1.14 ↗ | a/b three-layered sandwiches › HAD domain-like › HAD domain-related › HAD-like › HAD | 0.57 | 47.0 | 2.95e-01 | 100.0% | 58.7% |
| 3513576 | 101.1.1.76 ↗ | alpha arrays › HTH › HTH › Three-helical HTH › Integrase_H2C2 | 0.54 | 45.0 | 4.10e-01 | 100.0% | 87.3% |
| 3622015 | 101.1.1.76 ↗ | alpha arrays › HTH › HTH › Three-helical HTH › Integrase_H2C2 | 0.51 | 37.0 | 3.49e-01 | 100.0% | 65.0% |